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Merge pull request #21 from vladsaveliev/patch-1
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`stats` docs: "median AS" column and `-t` option.
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walaj authored Mar 10, 2018
2 parents bdf2982 + 2de7547 commit 9c1a539
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5 changes: 4 additions & 1 deletion README.md
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Expand Up @@ -61,9 +61,12 @@ Collect BX-level statistics from a 10X BAM

```
bxtools stats $bam > stats.tsv
## output is BX count median_isize median_mapq
## output columns: BX, read count, median insert size, median mapq, median AS.
```

To summarize based on another tag, use `-t`. E.g. : `bxtools stats -t MI $bam`


#### Tile

Collect BX-level read counts on a tiled genome
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