3DResUNet-DSN-CRF-Liver-segmentation

LITS17-challenge https://competitions.codalab.org/competitions/17094#results

How to use it?

step1 python preprocess.py(先在parameter.py中配置文件路径)

  data
     origin-data
          ct
           volume-0.nii
           ......
          seg
           segmentation-0.nii
           ......
     fixed-data
          ct
           volume-0.nii
           ......
          seg
           segmentation-0.nii
           ......

step2 python main.py

step3 python test.py

step4 python 2D-CRF.py or 3D-CRF.py

visual result: MITK、ITK-SNAP、Seg3D