diff --git a/src/common/wflign/src/wflign_patch.cpp b/src/common/wflign/src/wflign_patch.cpp index e6cb0b29..65859d18 100644 --- a/src/common/wflign/src/wflign_patch.cpp +++ b/src/common/wflign/src/wflign_patch.cpp @@ -2132,8 +2132,9 @@ query_start : query_end) mashmap_estimated_identity, false, // Don't add an endline after each alignment true); // This is a reverse complement alignment - // write tag indicating that this is a reverse complement alignment - out << "\t" << "rc:Z:true" << "\t" + // write tag indicating that this is a multipatch alignment + out << "\t" << "patch:Z:true" << "\t" + // and if the patch is inverted as well << "\t" << "inv:Z:" << (patch_aln.is_rev ? "true" : "false") << "\n"; } out << std::flush;