log the max mapping length to stderr

waveygang · Sep 6, 2024 · c48e848 · c48e848
1 parent 081671c
commit c48e848
Showing 1 changed file with 1 addition and 0 deletions.
diff --git a/src/map/include/parseCmdArgs.hpp b/src/map/include/parseCmdArgs.hpp
@@ -223,6 +223,7 @@ sequences shorter than segment length will be ignored", ArgvParser::OptionRequir
 
     }
     std::cerr << "[mashmap] Chaining gap max = " << parameters.chain_gap << std::endl;
+    std::cerr << "[mashmap] Max mapping length = " << parameters.max_mapping_length << std::endl;
     std::cerr << "[mashmap] Mappings per segment = " << parameters.numMappingsForSegment << std::endl;
     std::cerr << "[mashmap] Percentage identity threshold = " << 100 * parameters.percentageIdentity << "\%" << std::endl;