From c48e848d31ef4f277dc319721ca4643868cdff78 Mon Sep 17 00:00:00 2001 From: Alex Leonard Date: Fri, 6 Sep 2024 14:35:03 +0200 Subject: [PATCH] log the max mapping length to stderr --- src/map/include/parseCmdArgs.hpp | 1 + 1 file changed, 1 insertion(+) diff --git a/src/map/include/parseCmdArgs.hpp b/src/map/include/parseCmdArgs.hpp index 4b3c5db3..10016326 100644 --- a/src/map/include/parseCmdArgs.hpp +++ b/src/map/include/parseCmdArgs.hpp @@ -223,6 +223,7 @@ sequences shorter than segment length will be ignored", ArgvParser::OptionRequir } std::cerr << "[mashmap] Chaining gap max = " << parameters.chain_gap << std::endl; + std::cerr << "[mashmap] Max mapping length = " << parameters.max_mapping_length << std::endl; std::cerr << "[mashmap] Mappings per segment = " << parameters.numMappingsForSegment << std::endl; std::cerr << "[mashmap] Percentage identity threshold = " << 100 * parameters.percentageIdentity << "\%" << std::endl;