DESCRIPTION

Package: scMitoMut
Title: Single-cell Mitochondrial Mutation Analysis Tool
Version: 1.3.1
Authors@R: c(
  person("Wenjie", "Sun", email = "sunwjie@gmail.com", role = c("cre", "aut"), comment=c(ORCID="0000-0002-3100-2346")),
  person("Leila", "Perie", email = "leila.perie@curie.fr", role = "ctb")
  )
Description: 
    This package is designed for calling lineage-informative mitochondrial
    mutations using single-cell sequencing data, such as scRNASeq and scATACSeq
    (preferably the latter due to RNA editing issues). It includes functions for
    mutation calling and visualization. Mutation calling is done using
    beta-binomial distribution.
License: Artistic-2.0
Encoding: UTF-8
Depends: R (>= 4.3.0)
Imports: 
    data.table,
    Rcpp,
    magrittr,
    plyr,
    stringr,
    utils,
    stats,
    methods,
    ggplot2,
    pheatmap,
    RColorBrewer,
    rhdf5,
    readr,
    parallel,
    grDevices
LinkingTo:
    Rcpp,
    RcppArmadillo
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
Suggests: testthat (>= 3.0.0), BiocStyle, knitr, rmarkdown, VGAM, R.utils
Config/testthat/edition: 3
BugReports: https://github.com/wenjie1991/scMitoMut/issues
URL: http://github.com/wenjie1991/scMitoMut
VignetteBuilder: knitr
NeedsCompilation: yes
biocViews: Preprocessing, Sequencing, SingleCell