Discussions

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  Verification of Mokapot Results - Getting the Proteins Column to work and other questions

  CCranney asked Dec 1, 2023 in Q&A · Unanswered

  

  

  

  

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  Rescoring CSMs (cross-linked peptides) by mokapot

  mostafakalhor asked Aug 10, 2023 in Q&A · Unanswered

  

  

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  Unspecific enzyme searches

  tharan-srikumar-bruker asked Jan 26, 2023 in Q&A · Unanswered

  

  

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  Design decision behind grid

  jspaezp started Jan 2, 2023 in General

  

  

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  picked protein issue

  sdgroeve asked Nov 28, 2022 in Q&A · Unanswered

  

  

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  Design choice behind the default model

  jspaezp started Oct 14, 2022 in General

  

  

  

  

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  Questions about Comet hits and features

  wfondrie asked Oct 10, 2022 in Q&A · Answered

  

  

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  No decoy PSMs were detected

  wfondrie asked Oct 10, 2022 in Q&A · Answered

  

  

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  Does the joint model suffer from issues related to overfitting?

  ec-ho-ra-mos started Sep 9, 2022 in General

  

  

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  Mokapot computed group confidence score

  issararab started Apr 28, 2022 in General

  

  

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  The path to "phospho_rep1.pin" renders an error

  issararab started Mar 29, 2022 in General

  

  

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  Adding support for downstream quantification tools

  wfondrie started Mar 13, 2021 in Ideas

  

  

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  Can MokaPot Run PSM files?

  daishavdw asked Mar 16, 2021 in Q&A · Unanswered

  

  

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  Welcome to mokapot Discussions!

  wfondrie started Jan 20, 2021 in General

  

  

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