From d17e19bc01ce7d94a272a6e392df05ad2df53441 Mon Sep 17 00:00:00 2001
From: khanspers <kristina.hanspers@gladstone.ucsf.edu>
Date: Wed, 8 May 2024 17:26:17 -0700
Subject: [PATCH] added starter pathway

---
 data/draw-cofactor-reaction-start.gpml | 40 ++++++++++++++++++++++++++
 1 file changed, 40 insertions(+)
 create mode 100644 data/draw-cofactor-reaction-start.gpml

diff --git a/data/draw-cofactor-reaction-start.gpml b/data/draw-cofactor-reaction-start.gpml
new file mode 100644
index 0000000..94c36fd
--- /dev/null
+++ b/data/draw-cofactor-reaction-start.gpml
@@ -0,0 +1,40 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<Pathway xmlns="http://pathvisio.org/GPML/2013a" Name="draw-cofactor-reaction-start" Organism="Homo sapiens">
+  <Graphics BoardWidth="318.94752955639717" BoardHeight="327.4925970388157" />
+  <DataNode TextLabel="D-threo-Isocitrate" GraphId="b96da" Type="Metabolite">
+    <Comment>The ChEBI ID with the correct charge is: 15562</Comment>
+    <Attribute Key="org.pathvisio.model.BackpageHead" Value="Isocitrate" />
+    <Graphics CenterX="182.66528053227594" CenterY="105.1870748299321" Width="88.0" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" Color="4646dc" />
+    <Xref Database="HMDB" ID="HMDB0000193" />
+  </DataNode>
+  <DataNode TextLabel="2-oxoglutarate" GraphId="da75d" Type="Metabolite">
+    <Graphics CenterX="182.66528053227594" CenterY="287.4925970388157" Width="84.9238578680197" Height="20.0" ZOrder="32768" FontSize="10" Valign="Middle" Color="4646dc" />
+    <Xref Database="HMDB" ID="HMDB0000208" />
+  </DataNode>
+  <Interaction GraphId="id17b35470">
+    <Graphics ConnectorType="Segmented" ZOrder="12288" LineThickness="1.0">
+      <Point X="182.66528053227594" Y="115.1870748299321" GraphRef="b96da" RelX="0.0" RelY="1.0" />
+      <Point X="182.66528053227594" Y="277.4925970388157" GraphRef="da75d" RelX="0.0" RelY="-1.0" ArrowHead="mim-conversion" />
+    </Graphics>
+    <Xref Database="" ID="" />
+  </Interaction>
+  <InfoBox CenterX="4.5" CenterY="5.333333333333333" />
+  <Biopax>
+    <bp:openControlledVocabulary xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#">
+      <bp:TERM xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">citrate cycle pathway</bp:TERM>
+      <bp:ID xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PW:0000026</bp:ID>
+      <bp:Ontology xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Pathway Ontology</bp:Ontology>
+    </bp:openControlledVocabulary>
+    <bp:openControlledVocabulary xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#">
+      <bp:TERM xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">classic metabolic pathway</bp:TERM>
+      <bp:ID xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PW:0000002</bp:ID>
+      <bp:Ontology xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Pathway Ontology</bp:Ontology>
+    </bp:openControlledVocabulary>
+    <bp:openControlledVocabulary xmlns:bp="http://www.biopax.org/release/biopax-level3.owl#">
+      <bp:TERM xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">TCA cycle</bp:TERM>
+      <bp:ID xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">PW:0000026</bp:ID>
+      <bp:Ontology xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" rdf:datatype="http://www.w3.org/2001/XMLSchema#string">Pathway Ontology</bp:Ontology>
+    </bp:openControlledVocabulary>
+  </Biopax>
+</Pathway>
+