Makefile

## Makefile 

CC	       = gcc
CC_OPTIONS = -Wall -g -v -O3 -std=gnu11 -DNDEBUG
INCLUDES   =  
CFLAGS     =  $(CC_OPTIONS) $(INCLUDES)
LIBS       = -lm

OUT = bin
PRIMER_LG_EXE = ${OUT}/mpd
PRIMER_LG_SRC = src/mem.c src/mpd.c src/mpd_lessGreedy.c
PRIMER_LG_OBJ = $(PRIMER_LG_SRC:.c=.o)

PRIMER_MG_EXE  = ${OUT}/mpd_greedy
PRIMER_MG_SRC  = src/mem.c src/mpd.c src/mpd_moreGreedy.c
PRIMER_MG_OBJ  = $(PRIMER_MG_SRC:.c=.o)

POOL_EXE = ${OUT}/pool_check
POOL_SRC = src/mem.c src/mpd.c src/pool_check.c
POOL_OBJ = $(POOL_SRC:.c=.o)

INDEX_EXE = ${OUT}/index_genome
INDEX_SRC = src/mem.c src/mpd.c src/index_genome.c
INDEX_OBJ = $(INDEX_SRC:.c=.o)

PCOMP_EXE = ${OUT}/primer_compat
PCOMP_SRC = src/mem.c src/mpd.c src/primer_compat.c
PCOMP_OBJ = $(PCOMP_SRC:.c=.o)


PROGS = $(PRIMER_LG_EXE) $(PRIMER_MG_EXE) $(POOL_EXE) $(INDEX_EXE) $(PCOMP_EXE)

all: introduce $(PROGS)
	@echo done.

$(PRIMER_LG_EXE): $(PRIMER_LG_OBJ)
	$(CC) -o $@ $(CFLAGS) $(PRIMER_LG_OBJ) $(LIBS)

$(PRIMER_MG_EXE): $(PRIMER_MG_OBJ)
	$(CC) -o $@ $(CFLAGS) $(PRIMER_MG_OBJ) $(LIBS)

$(POOL_EXE): $(POOL_OBJ)
	$(CC) -o $@ $(CFLAGS) $(POOL_OBJ) $(LIBS)

$(INDEX_EXE): $(INDEX_OBJ)
	$(CC) -o $@ $(CFLAGS) $(INDEX_OBJ) $(LIBS)

$(PCOMP_EXE): $(PCOMP_OBJ)
	$(CC) -o $@ $(CFLAGS) $(PCOMP_OBJ) $(LIBS)

introduce:
	@echo "Building..."
	mkdir -p ${OUT}

clean:
	rm -f src/*.o

distclean: clean
	rm -f $(INDEX_EXE) $(PRIMER_LG_EXE) $(PRIMER_MG_EXE) $(POOL_EXE)

## end of Makefile
# DO NOT DELETE THIS LINE -- make depend depends on it.