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Merge pull request #358 from wtsi-npg/devel
Pull from devel to master to create release 4.7.0
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| Original file line number | Diff line number | Diff line change |
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| #!/bin/sh | ||
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| set -ex | ||
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| n="$CPU_COUNT" | ||
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| ./configure \ | ||
| --prefix="$PREFIX" \ | ||
| CPPFLAGS="-I$PREFIX/include" \ | ||
| LDFLAGS="-Wl,-rpath-link,$PREFIX/lib -Wl,--disable-new-dtags -L$PREFIX/lib" | ||
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| make -j "$n" | ||
| make install |
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| Original file line number | Diff line number | Diff line change |
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| @@ -0,0 +1,153 @@ | ||
| {% set version = "1.14.14" %} | ||
| {% set sha256 = "a471c79b9aede1776a895cb46fcb81b5d163d6ca9c3e1e33096346fef46d3598" %} | ||
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| package: | ||
| name: io_lib-pkg | ||
| version: "{{ version }}" | ||
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| about: | ||
| home: https://sourceforge.net/projects/staden | ||
| license: BSD | ||
| summary: DNA sequence assembly, editing and analysis tools. | ||
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| build: | ||
| number: 0 | ||
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| source: | ||
| url: https://github.com/jkbonfield/io_lib/releases/download/io_lib-1-14-14/io_lib-{{ version }}.tar.gz | ||
| fn: io_lib-{{ version }}.tar.gz | ||
| sha256: {{ sha256 }} | ||
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| requirements: | ||
| build: | ||
| - {{ compiler("c") }} | ||
| - autoconf | ||
| - make | ||
| host: | ||
| - libbz2-dev | ||
| - libcurl-dev | ||
| - liblzma-dev | ||
| - libz-dev | ||
| run: | ||
| - libbz2 | ||
| - libcurl | ||
| - liblzma | ||
| - libz | ||
|
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| outputs: | ||
| - name: io_lib | ||
| version: {{ version }} | ||
| requirements: | ||
| build: | ||
| - {{ compiler("c") }} | ||
| - autoconf | ||
| host: | ||
| - libbz2-dev | ||
| - libcurl-dev | ||
| - liblzma-dev | ||
| - libz-dev | ||
| run: | ||
| - {{ pin_subpackage("libstaden-read", exact=True) }} | ||
| - libbz2 | ||
| - libcurl | ||
| - liblzma | ||
| - libz | ||
| files: | ||
| - bin/append_sff | ||
| - bin/convert_trace | ||
| - bin/cram_dump | ||
| - bin/cram_filter | ||
| - bin/cram_index | ||
| - bin/cram_size | ||
| - bin/extract_fastq | ||
| - bin/extract_qual | ||
| - bin/extract_seq | ||
| - bin/get_comment | ||
| - bin/hash_exp | ||
| - bin/hash_extract | ||
| - bin/hash_list | ||
| - bin/hash_sff | ||
| - bin/hash_tar | ||
| - bin/index_tar | ||
| - bin/makeSCF | ||
| - bin/scf_dump | ||
| - bin/scf_info | ||
| - bin/scf_update | ||
| - bin/scram_flagstat | ||
| - bin/scram_merge | ||
| - bin/scram_pileup | ||
| - bin/scram_test | ||
| - bin/scramble | ||
| - bin/srf2fasta | ||
| - bin/srf2fastq | ||
| - bin/srf_dump_all | ||
| - bin/srf_extract_hash | ||
| - bin/srf_extract_linear | ||
| - bin/srf_filter | ||
| - bin/srf_index_hash | ||
| - bin/srf_info | ||
| - bin/srf_list | ||
| - bin/trace_dump | ||
| - bin/ztr_dump | ||
| - share/man/man1/scramble.1 | ||
| - share/man/man1/srf2fasta.1 | ||
| - share/man/man1/srf2fastq.1 | ||
| - share/man/man1/srf_index_hash.1 | ||
| - share/man/man1/srf_info.1 | ||
| - share/man/man1/srf_list.1 | ||
| test: | ||
| commands: | ||
| - scramble -h | ||
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| - name: libstaden-read | ||
| version: {{ version }} | ||
| requirements: | ||
| build: | ||
| - {{ compiler("c") }} | ||
| - autoconf | ||
| host: | ||
| - libbz2-dev | ||
| - libcurl-dev | ||
| - liblzma-dev | ||
| - libz-dev | ||
| run: | ||
| - libbz2 | ||
| - libcurl | ||
| - liblzma | ||
| - libz | ||
| files: | ||
| - lib/libstaden-read* | ||
| test: | ||
| commands: | ||
| - test -f ${PREFIX}/lib/libstaden-read.a | ||
| - test -h ${PREFIX}/lib/libstaden-read.so | ||
|
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| - name: libstaden-read-dev | ||
| version: {{ version }} | ||
| requirements: | ||
| run: | ||
| - {{ pin_subpackage("libstaden-read", exact=True) }} | ||
| files: | ||
| - bin/io_lib-config | ||
| - include/io_lib | ||
| - share/man/man3/ExperimentFile.3 | ||
| - share/man/man3/exp2read.3 | ||
| - share/man/man3/fread_reading.3 | ||
| - share/man/man3/fread_scf.3 | ||
| - share/man/man3/fwrite_reading.3 | ||
| - share/man/man3/fwrite_scf.3 | ||
| - share/man/man3/read2exp.3 | ||
| - share/man/man3/read2scf.3 | ||
| - share/man/man3/read_allocate.3 | ||
| - share/man/man3/read_deallocate.3 | ||
| - share/man/man3/read_reading.3 | ||
| - share/man/man3/read_scf.3 | ||
| - share/man/man3/read_scf_header.3 | ||
| - share/man/man3/scf2read.3 | ||
| - share/man/man3/write_reading.3 | ||
| - share/man/man3/write_scf.3 | ||
| - share/man/man3/write_scf_header.3 | ||
| - share/man/man4/Read.4 | ||
| test: | ||
| commands: | ||
| - test -f ${PREFIX}/include/io_lib/cram_io.h |