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Update Changes for release 2.8
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dozy committed Apr 18, 2018
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Release 2.8
- switched to disposable-irods 1.3 (iRODS packages from Sanger S3,
replaced RENCI FTP site)
- added single-server option
- added support for data files to change during the tar process
and to detect and archive those changes
- individually check the checksum of files local to the gridionxi
where they are loaded and compare with the iRODS checksum
- updated the samtools and htslib versions to 1.7
- added tar file auditor
- use manifest checksums to confirm file contents
- support loading PacBio RSII files created using out of date reagents
- allow a user-supplied checksum to be used in TarPublisher and TarStream
(so GridIONRunPublisher can allow the checksum of uncompressed data to be used)
- publish fastq files during the catchup phase
- allow auditing of older GridION tar files which used a relative path for tarred files
- archiving changes for illumina sequencing genotype files
- fix for the regex used when choosing to ignore files
- minor fix to DataObjectFactory.pm

Release 2.7
- Moved quant file tests to illumina run publisher tests
- Added compression extentions to illumina ancillary file regular expression
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