From 57dab2eca7002305f33e6ce004bdc8e0235f3db2 Mon Sep 17 00:00:00 2001 From: Marina Gourtovaia Date: Fri, 12 Jan 2024 16:22:17 +0000 Subject: [PATCH] Updated POD for the make_primary_metadata method. Brought POD for the make_primary_metadata method in WTSI::NPG::HTS::Illumina::Annotator in line with the current code. --- lib/WTSI/NPG/HTS/Illumina/Annotator.pm | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/lib/WTSI/NPG/HTS/Illumina/Annotator.pm b/lib/WTSI/NPG/HTS/Illumina/Annotator.pm index 3267e3be..53aaa69b 100644 --- a/lib/WTSI/NPG/HTS/Illumina/Annotator.pm +++ b/lib/WTSI/NPG/HTS/Illumina/Annotator.pm @@ -19,20 +19,20 @@ with qw[ =head2 make_primary_metadata Arg [1] : Biomaterial composition, npg_tracking::glossary::composition. - Arg [2] : Total number of reads (non-secondary/supplementary), Int. - Named args : tag_index Tag index, Int. Optional. - is_paired_read Run is paired, Bool. Optional. + Named args : is_paired_read Run is paired, Bool. Optional. is_aligned Run is aligned, Bool. Optional. reference Reference file path, Str. Optional. alt_process Alternative process name, Str. Optional. - alignment_filter Alignment filter name, Str. Optional. + num_reads Total number of reads + (non-secondary/supplementary), Int. Optional. seqchksum Seqchksum digestgg112, Str. Optional. lims_factory Factory for st:api::lims objects, WTSI::NPG::HTS::LIMSFactory. Optional. Example : my @avus = $ann->make_primary_metadata - ($id_run, $position, $num_reads, + ($composition, + num_reads => 100, tag_index => $tag_index, is_paired_read => 1, is_aligned => 1,