From f552ad9da810a8006244a045539fd12b2c7760ec Mon Sep 17 00:00:00 2001 From: Carol Scott Date: Mon, 18 Nov 2024 16:00:40 +0000 Subject: [PATCH] Fix tests --- lib/WTSI/NPG/HTS/PacBio/AnalysisMonitor.pm | 4 ++-- .../cromwell-job/call-lima/execution/mlwh_locations.json | 2 +- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/lib/WTSI/NPG/HTS/PacBio/AnalysisMonitor.pm b/lib/WTSI/NPG/HTS/PacBio/AnalysisMonitor.pm index 4a30ad12..1270186e 100644 --- a/lib/WTSI/NPG/HTS/PacBio/AnalysisMonitor.pm +++ b/lib/WTSI/NPG/HTS/PacBio/AnalysisMonitor.pm @@ -18,8 +18,8 @@ with qw[ our $VERSION = ''; -Readonly::Scalar my $ISO_BULK_ANALYSIS = q{pb_segment_reads_and_isoseq}; -Readonly::Scalar my $ISO_SC_ANALYSIS = q{pb_segment_reads_and_sc_isoseq}; +Readonly::Scalar my $ISO_BULK_ANALYSIS => q{pb_segment_reads_and_isoseq}; +Readonly::Scalar my $ISO_SC_ANALYSIS => q{pb_segment_reads_and_sc_isoseq}; has '+local_staging_area' => (required => 0); diff --git a/t/data/pacbio/analysis/0000019480/cromwell-job/call-lima/execution/mlwh_locations.json b/t/data/pacbio/analysis/0000019480/cromwell-job/call-lima/execution/mlwh_locations.json index 299326bc..cc373362 100644 --- a/t/data/pacbio/analysis/0000019480/cromwell-job/call-lima/execution/mlwh_locations.json +++ b/t/data/pacbio/analysis/0000019480/cromwell-job/call-lima/execution/mlwh_locations.json @@ -1 +1 @@ -{"version":"1.0","products":[{"irods_data_relative_path":"m84098_240322_112047_s1.bc2048--bc2048.bam","irods_root_collection":"/Sanger1-dev/home/ces/AnalysisPublisherTest.20618.0/1_A01/","pipeline_name":"npg-prod","id_product":"04bd5036fff6b0037535221ba755725b14ef0f4f44a3ac0030f899edaae2e391","seq_platform_name":"pacbio"},{"irods_data_relative_path":"m84098_240322_112047_s1.bc2048--bc2048.bam","irods_root_collection":"/Sanger1-dev/home/ces/AnalysisPublisherTest.829372.0/1_A01/","pipeline_name":"npg-prod","id_product":"04bd5036fff6b0037535221ba755725b14ef0f4f44a3ac0030f899edaae2e391","seq_platform_name":"pacbio"},{"pipeline_name":"npg-prod","irods_data_relative_path":"m84098_240322_112047_s1.bc2048--bc2048.bam","irods_root_collection":"/Sanger1-dev/home/ces/AnalysisPublisherTest.52482.0/1_A01/","id_product":"04bd5036fff6b0037535221ba755725b14ef0f4f44a3ac0030f899edaae2e391","seq_platform_name":"pacbio"},{"irods_data_relative_path":"m84098_240322_112047_s1.bc2048--bc2048.bam","irods_root_collection":"/Sanger1-dev/home/ces/AnalysisPublisherTest.39705.0/1_A01/","pipeline_name":"npg-prod","seq_platform_name":"pacbio","id_product":"04bd5036fff6b0037535221ba755725b14ef0f4f44a3ac0030f899edaae2e391"},{"pipeline_name":"npg-prod","irods_data_relative_path":"m84098_240322_112047_s1.bc2048--bc2048.bam","irods_root_collection":"/Sanger1-dev/home/ces/AnalysisPublisherTest.660768.0/1_A01/","seq_platform_name":"pacbio","id_product":"04bd5036fff6b0037535221ba755725b14ef0f4f44a3ac0030f899edaae2e391"},{"id_product":"04bd5036fff6b0037535221ba755725b14ef0f4f44a3ac0030f899edaae2e391","seq_platform_name":"pacbio","irods_root_collection":"/Sanger1-dev/home/ces/AnalysisPublisherTest.54890.0/1_A01/","irods_data_relative_path":"m84098_240322_112047_s1.bc2048--bc2048.bam","pipeline_name":"npg-prod"},{"seq_platform_name":"pacbio","id_product":"04bd5036fff6b0037535221ba755725b14ef0f4f44a3ac0030f899edaae2e391","pipeline_name":"npg-prod","irods_root_collection":"/Sanger1-dev/home/ces/AnalysisPublisherTest.8865.0/1_A01/","irods_data_relative_path":"m84098_240322_112047_s1.bc2048--bc2048.bam"},{"irods_root_collection":"/Sanger1-dev/home/ces/AnalysisPublisherTest.13951.0/1_A01/","irods_data_relative_path":"m84098_240322_112047_s1.bc2048--bc2048.bam","pipeline_name":"npg-prod","id_product":"04bd5036fff6b0037535221ba755725b14ef0f4f44a3ac0030f899edaae2e391","seq_platform_name":"pacbio"},{"irods_data_relative_path":"m84098_240322_112047_s1.bc2048--bc2048.bam","irods_root_collection":"/Sanger1-dev/home/ces/AnalysisPublisherTest.52268.0/1_A01/","pipeline_name":"npg-prod","seq_platform_name":"pacbio","id_product":"04bd5036fff6b0037535221ba755725b14ef0f4f44a3ac0030f899edaae2e391"},{"irods_root_collection":"/Sanger1-dev/home/ces/AnalysisPublisherTest.10204.0/1_A01/","irods_data_relative_path":"m84098_240322_112047_s1.bc2048--bc2048.bam","pipeline_name":"npg-prod","seq_platform_name":"pacbio","id_product":"04bd5036fff6b0037535221ba755725b14ef0f4f44a3ac0030f899edaae2e391"}]} \ No newline at end of file +{"products":[{"id_product":"04bd5036fff6b0037535221ba755725b14ef0f4f44a3ac0030f899edaae2e391","irods_data_relative_path":"m84098_240322_112047_s1.bc2048--bc2048.bam","seq_platform_name":"pacbio","pipeline_name":"npg-prod","irods_root_collection":"/Sanger1-dev/home/ces/AnalysisPublisherTest.54890.0/1_A01/"},{"id_product":"04bd5036fff6b0037535221ba755725b14ef0f4f44a3ac0030f899edaae2e391","irods_data_relative_path":"m84098_240322_112047_s1.bc2048--bc2048.bam","seq_platform_name":"pacbio","pipeline_name":"npg-prod","irods_root_collection":"/Sanger1-dev/home/ces/AnalysisPublisherTest.4005526.0/1_A01/"},{"irods_data_relative_path":"m84098_240322_112047_s1.bc2048--bc2048.bam","id_product":"04bd5036fff6b0037535221ba755725b14ef0f4f44a3ac0030f899edaae2e391","irods_root_collection":"/Sanger1-dev/home/ces/AnalysisPublisherTest.52482.0/1_A01/","pipeline_name":"npg-prod","seq_platform_name":"pacbio"},{"irods_data_relative_path":"m84098_240322_112047_s1.bc2048--bc2048.bam","id_product":"04bd5036fff6b0037535221ba755725b14ef0f4f44a3ac0030f899edaae2e391","irods_root_collection":"/Sanger1-dev/home/ces/AnalysisPublisherTest.20618.0/1_A01/","pipeline_name":"npg-prod","seq_platform_name":"pacbio"},{"seq_platform_name":"pacbio","pipeline_name":"npg-prod","irods_root_collection":"/Sanger1-dev/home/ces/AnalysisPublisherTest.52268.0/1_A01/","id_product":"04bd5036fff6b0037535221ba755725b14ef0f4f44a3ac0030f899edaae2e391","irods_data_relative_path":"m84098_240322_112047_s1.bc2048--bc2048.bam"},{"id_product":"04bd5036fff6b0037535221ba755725b14ef0f4f44a3ac0030f899edaae2e391","irods_data_relative_path":"m84098_240322_112047_s1.bc2048--bc2048.bam","seq_platform_name":"pacbio","pipeline_name":"npg-prod","irods_root_collection":"/Sanger1-dev/home/ces/AnalysisPublisherTest.13951.0/1_A01/"},{"id_product":"04bd5036fff6b0037535221ba755725b14ef0f4f44a3ac0030f899edaae2e391","irods_data_relative_path":"m84098_240322_112047_s1.bc2048--bc2048.bam","seq_platform_name":"pacbio","pipeline_name":"npg-prod","irods_root_collection":"/Sanger1-dev/home/ces/AnalysisPublisherTest.8865.0/1_A01/"},{"irods_data_relative_path":"m84098_240322_112047_s1.bc2048--bc2048.bam","id_product":"04bd5036fff6b0037535221ba755725b14ef0f4f44a3ac0030f899edaae2e391","irods_root_collection":"/Sanger1-dev/home/ces/AnalysisPublisherTest.39705.0/1_A01/","pipeline_name":"npg-prod","seq_platform_name":"pacbio"},{"seq_platform_name":"pacbio","pipeline_name":"npg-prod","irods_root_collection":"/Sanger1-dev/home/ces/AnalysisPublisherTest.829372.0/1_A01/","id_product":"04bd5036fff6b0037535221ba755725b14ef0f4f44a3ac0030f899edaae2e391","irods_data_relative_path":"m84098_240322_112047_s1.bc2048--bc2048.bam"},{"seq_platform_name":"pacbio","pipeline_name":"npg-prod","irods_root_collection":"/Sanger1-dev/home/ces/AnalysisPublisherTest.10204.0/1_A01/","id_product":"04bd5036fff6b0037535221ba755725b14ef0f4f44a3ac0030f899edaae2e391","irods_data_relative_path":"m84098_240322_112047_s1.bc2048--bc2048.bam"},{"irods_root_collection":"/Sanger1-dev/home/ces/AnalysisPublisherTest.660768.0/1_A01/","seq_platform_name":"pacbio","pipeline_name":"npg-prod","irods_data_relative_path":"m84098_240322_112047_s1.bc2048--bc2048.bam","id_product":"04bd5036fff6b0037535221ba755725b14ef0f4f44a3ac0030f899edaae2e391"}],"version":"1.0"} \ No newline at end of file