Merge pull request #899 from jmtcsngr/fix_perl_brew

install libdevel-patchperl-perl in github runner
wtsi-npg · Dec 17, 2024 · 2f6ff9e · 2f6ff9e
2 parents 5f39e5b + a53f90f
commit 2f6ff9e
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diff --git a/.github/workflows/run-tests.yml b/.github/workflows/run-tests.yml
@@ -34,7 +34,8 @@ jobs:
           sudo apt-get update
           # https://github.com/actions/runner-images/issues/2139
           sudo apt-get remove -y nginx libgd3
-          sudo apt-get install -y libgd-dev uuid-dev libgd-text-perl
+          # libdevel-patchperl-perl is needed for perlbrew
+          sudo apt-get install -y libgd-dev uuid-dev libgd-text-perl libdevel-patchperl-perl
 
       - name: "Install Miniforge"
         run: |

diff --git a/Changes b/Changes
@@ -1,5 +1,6 @@
 LIST OF CHANGES FOR NPG-QC PACKAGE
 
+ - Fix perlbrew installation by installing libdevel-patchperl-perl in runner
  - Fixes/updates for lane-level RoboQC lane-level assessment:
     - Excluded study-specific lane-lane assessment in npg_qc::autoqc::check::review
       This helps to avoid uncertainty in evaluating lanes where samples belong to