diff --git a/Changes b/Changes index 7ad9e0d3..8544a3a9 100644 --- a/Changes +++ b/Changes @@ -14,6 +14,7 @@ LIST OF CHANGES - Extended the code for the samplesheet daemon to generate samplesheets for NovaSeqX instruments. - Removed remaining unused test data from the era of xml st::api::lims driver. + - update signature and iRODS documentation link in template for emails release 98.1.0 - Added a new method, latest_revision_for_modification, to diff --git a/data/npg_tracking_email/templates/run_status2followers.tt2 b/data/npg_tracking_email/templates/run_status2followers.tt2 index 8289a6f1..38c6fd5a 100644 --- a/data/npg_tracking_email/templates/run_status2followers.tt2 +++ b/data/npg_tracking_email/templates/run_status2followers.tt2 @@ -11,7 +11,7 @@ Study '[% lanes.0.study_name %]' has samples in the following lanes of this run: Sequencing and default analysis for this run completed. Run is now pending manual QC review. Meanwhile, we will be loading analysis results into iRODS. [%- END %] [%- IF status_description == 'qc complete' -%] -The manual QC review is complete and your data should now be available from iRODS (see http://scratchy.internal.sanger.ac.uk/wiki/index.php/IRODS_for_Sequencing_Users ). +The manual QC review is complete and your data should now be available from iRODS (see https://ssg-confluence.internal.sanger.ac.uk/display/FARM/iRODS ). [%- END %] NPG page for the run: diff --git a/data/npg_tracking_email/templates/wrapper.tt2 b/data/npg_tracking_email/templates/wrapper.tt2 index ddc9998b..16f88c74 100644 --- a/data/npg_tracking_email/templates/wrapper.tt2 +++ b/data/npg_tracking_email/templates/wrapper.tt2 @@ -1,2 +1,2 @@ [% content %] -NPG, DNA Pipelines Informatics +NPG on behalf of DNA Pipelines diff --git a/t/80-npg_tracking-report-event2subscribers.t b/t/80-npg_tracking-report-event2subscribers.t index 0aeb8372..4bd65e1a 100644 --- a/t/80-npg_tracking-report-event2subscribers.t +++ b/t/80-npg_tracking-report-event2subscribers.t @@ -156,7 +156,7 @@ Run 21915 was assigned status "run pending" on 2017-02-08 11:49:39 by joe_events NPG page for this run: http://sfweb.internal.sanger.ac.uk:9000/perl/npg/run/21915 -NPG, DNA Pipelines Informatics +NPG on behalf of DNA Pipelines REPORT is ($e->report_full(), $report, 'full report text'); @@ -173,7 +173,7 @@ $lims_summary NPG page for this run: http://sfweb.internal.sanger.ac.uk:9000/perl/npg/run/21915 -NPG, DNA Pipelines Informatics +NPG on behalf of DNA Pipelines REPORT1 is ($e->report_full($e->lims()), $report, 'full report text with LIMs data'); @@ -217,7 +217,7 @@ Instrument HS8 status changed to "wash performed" on $date_as_string by joe_appr NPG page for this instrument: http://sfweb.internal.sanger.ac.uk:9000/perl/npg/instrument/HS8 -NPG, DNA Pipelines Informatics +NPG on behalf of DNA Pipelines REPORT2 is ($e->report_full($e->lims()), $report, 'full report text'); @@ -231,7 +231,7 @@ Instrument HS8 status changed to "wash performed" on $date_as_string by joe_appr NPG page for this instrument: http://sfweb.internal.sanger.ac.uk:9000/perl/npg/instrument/HS8 -NPG, DNA Pipelines Informatics +NPG on behalf of DNA Pipelines REPORT3 is ($e->report_full($e->lims()), $report, 'full report text with a comment'); is (scalar @{$e->reports}, 1, 'One report generated'); @@ -272,7 +272,7 @@ $lims_summary NPG page for this run: http://sfweb.internal.sanger.ac.uk:9000/perl/npg/run/21915 -NPG, DNA Pipelines Informatics +NPG on behalf of DNA Pipelines REPORT4 is ($e->report_full($e->lims()), $report, 'full report text with LIMs data'); }; @@ -325,7 +325,7 @@ Lane 2: Samples NPG page for this run: http://sfweb.internal.sanger.ac.uk:9000/perl/npg/run/21915 -NPG, DNA Pipelines Informatics +NPG on behalf of DNA Pipelines REPORT5 is ($e->report_full($e->lims()), $report, 'full report text with LIMs data'); }; @@ -362,7 +362,7 @@ Instrument HS8 annotated by joe_loader on $date_as_string - New instrument annot NPG page for this instrument: http://sfweb.internal.sanger.ac.uk:9000/perl/npg/instrument/HS8 -NPG, DNA Pipelines Informatics +NPG on behalf of DNA Pipelines REPORT6 is ($e->report_full($e->lims()), $report, 'full report text'); }; diff --git a/t/data/report/report_text_1 b/t/data/report/report_text_1 index cc591d00..77dd450c 100644 --- a/t/data/report/report_text_1 +++ b/t/data/report/report_text_1 @@ -37,5 +37,5 @@ Analysis and QC information for this run will be/is available: http://sfweb.internal.sanger.ac.uk:1959/illumina/runs/21915 http://sfweb.internal.sanger.ac.uk:1959/checks/runs/21915 -NPG, DNA Pipelines Informatics +NPG on behalf of DNA Pipelines diff --git a/t/data/report/report_text_5 b/t/data/report/report_text_5 index 46ad211f..dddf67ae 100644 --- a/t/data/report/report_text_5 +++ b/t/data/report/report_text_5 @@ -36,7 +36,7 @@ Lane 7: Samples ... 6 samples in total -The manual QC review is complete and your data should now be available from iRODS (see http://scratchy.internal.sanger.ac.uk/wiki/index.php/IRODS_for_Sequencing_Users ). +The manual QC review is complete and your data should now be available from iRODS (see https://ssg-confluence.internal.sanger.ac.uk/display/FARM/iRODS ). NPG page for the run: http://sfweb.internal.sanger.ac.uk:9000/perl/npg/run/21915 @@ -45,5 +45,5 @@ Analysis and QC information for this run will be/is available: http://sfweb.internal.sanger.ac.uk:1959/illumina/runs/21915 http://sfweb.internal.sanger.ac.uk:1959/checks/runs/21915 -NPG, DNA Pipelines Informatics +NPG on behalf of DNA Pipelines