diff --git a/MANIFEST b/MANIFEST index b06146ca..cf8ab46b 100644 --- a/MANIFEST +++ b/MANIFEST @@ -670,6 +670,7 @@ t/data/run_params/RunParameters.novaseq.xp.lite.xml t/data/samplesheet/samplesheet_7753.csv t/data/samplesheet/samplesheet_27483.csv t/data/samplesheet/samplesheet_33990.csv +t/data/samplesheet/samplesheet_47995.csv t/data/samplesheet/4pool4libs_extended.csv t/data/samplesheet/6946_extended.csv t/data/samplesheet/7007_extended.csv diff --git a/lib/st/api/lims.pm b/lib/st/api/lims.pm index 1b3fa7bd..c3c1ff61 100644 --- a/lib/st/api/lims.pm +++ b/lib/st/api/lims.pm @@ -11,6 +11,7 @@ use Class::Load qw/load_class/; use npg_tracking::util::types; use npg_tracking::glossary::rpt; +use npg_tracking::glossary::composition::factory::rpt_list; our $VERSION = '0'; @@ -63,6 +64,8 @@ Readonly::Scalar my $DEFAULT_DRIVER_TYPE => $SAMPLESHEET_DRIVER_TYPE; Readonly::Scalar my $DUAL_INDEX_TAG_LENGTH => 16; +Readonly::Scalar my $TAG_INDEX_4_UNDEFINED => -1; + Readonly::Hash my %METHODS_PER_CATEGORY => { 'primary' => [qw/ tag_index position @@ -912,84 +915,154 @@ sub aggregate_xlanes { =head2 aggregate_libraries +Given a list of lane-level st::api::lims objects, finds their children, which +can be merged and analysed together across all or some of the lanes. + +All argument lane objects should belong to the same run. It is assumed that +they all use the same st::api::lims driver type. + +Returns two lists of objects, one for merged entities and one for singletons, +which are wrapped into a dictionary. Either of these lists can be empty. Both +of the lists are guaranteed not to be empty at the same time. + +Tag zero objects are neither added nor explicitly removed. Objects for +spiked-in controls (if present) are added to the list of singletons. + +The lists of singletons and merges are sorted. For a given set of input lane +st::api::lims objects the same lists are always returned. + +Criteria for entities to be eligible for a merge: +* they are not controls, +* they belong to the same library, +* they share the same tag index, therefore belong to different lanes, +* they belong to the same study. + +This method can be used both as instance and as a class method. + + my $all_lims = st::api::lims->aggregate_libraries($run_lims->children()); + for my $l (@{$all_lims->{'singles'}}) { + print 'No merge for ' . $l->to_string; + } + for my $l (@{$all_lims->{'merges'}}) { + print 'Merged entity ' . $l->to_string; + } + =cut + sub aggregate_libraries() { my ($self, $lane_lims_array) = @_; - my @id_runs = uniq map { $_->id_run } @{$lane_lims_array}; - if (@id_runs != 1) { - croak 'Multiple run IDs in a potential library merge'; - } + # This restriction might be lifted in future. + _check_value_is_unique('id_run', 'run IDs', $lane_lims_array); - my $all_lims_objects = {}; my $lims_objects_by_library = {}; - + my @singles = (); my @all_single_lims_objs = map { $_->is_pool ? $_->children() : $_ } @{$lane_lims_array}; - foreach my $obj (@all_single_lims_objs) { - if ($obj->is_control()) { # Do not merge spiked PhiX libraries. - push @{$all_lims_objects->{'single'}}, $obj; + if ($obj->is_control()) { + push @singles, $obj; } else { push @{$lims_objects_by_library->{$obj->library_id}}, $obj; } } - my $merge_set = {}; - - # Do not use $self for this to retain ability to use this method as a class - # method. + # Get the common st::api::lims driver arguments, which will be used + # to create objects for merged entities. + # Do not use $self for copying the driver arguments in order to retain + # ability to use this method as a class method. my %init = %{$lane_lims_array->[0]->_driver_arguments()}; + delete $init{position}; + delete $init{id_run}; + my $merges = {}; + my $lane_set_delim = q[,]; foreach my $library_id (keys %{$lims_objects_by_library}) { my @lib_lims = @{$lims_objects_by_library->{$library_id}}; if (@lib_lims == 1) { - push @{$all_lims_objects->{'single'}}, $lib_lims[0]; + push @singles, @lib_lims; } else { - my @study_ids = uniq map { $_->study_id } @lib_lims; - if (@study_ids != 1) { - croak 'Multiple studies in a potential merge'; - } - my @tag_indexes = - uniq - map { defined $_->tag_index ? $_->tag_index : 'undefined' } - @lib_lims; - if (@tag_indexes != 1) { - croak 'Inconsistent tag indexes in a potential merge'; - } - my @lanes = uniq map {$_->position} @lib_lims; - if (@lanes != @lib_lims) { - croak 'Intra-lane merge is detected in a potential merge'; + _check_merge_correctness(\@lib_lims); + my $lane_set = join $lane_set_delim, + sort { $a <=> $b } map { $_->position } @lib_lims; + my $tag_index = $lib_lims[0]->tag_index ; + if (!defined $tag_index) { + $tag_index = $TAG_INDEX_4_UNDEFINED; } - my $lane_set = join q[,], @lanes; - $all_lims_objects->{'merges'}->{$lane_set}->{$tag_indexes[0]} = - __PACKAGE__->new( - %init, - rpt_list => npg_tracking::glossary::rpt->deflate_rpts(\@lib_lims) - ); + ##### + # rpt_list which we use to instantiate the object below has to be + # ordered correctly. Wrong order might not change the properties of + # the resulting st::api::lims object. However, difficult to track + # bugs might result in a situation when the value of this + # attribute for the object itself and for the composition object + # for this object differs. + my $rpt_list = npg_tracking::glossary::rpt->deflate_rpts(\@lib_lims); + $rpt_list = npg_tracking::glossary::composition::factory::rpt_list + ->new(rpt_list => $rpt_list)->create_composition() + ->freeze2rpt(); + $merges->{$lane_set}->{$tag_index} = __PACKAGE__->new( + %init, rpt_list => $rpt_list + ); } } - # Lane sets should not intersect. - my @positions = - map { (split /,/smx, $_) } - keys %{$all_lims_objects->{'merges'}}; - if (@positions != uniq @positions) { + # Lane sets should not intersect. Error if a lane belongs to multiple sets. + my @all_lanes_in_merged_sets = map { (split /$lane_set_delim/smx, $_) } + keys %{$merges}; + if (@all_lanes_in_merged_sets != uniq @all_lanes_in_merged_sets) { croak 'No clean split between lanes in potential merges'; } - # Within each set sort LIMS objects by tag index and keep - # the sorted list. - foreach my $lane_set ( keys %{$all_lims_objects->{'merges'}} ) { - my @sorted_lims_onjects = - map {$all_lims_objects->{'merges'}->{$lane_set}->{$_}} - (sort { $a <=> $b } keys %{$all_lims_objects->{'merges'}->{$lane_set}}); - $all_lims_objects->{'merges'}->{$lane_set} = \@sorted_lims_onjects; + my $all_lims_objects = {'singles' => [], 'merges' => []}; + # Arrange in a predictable consistent orger. + foreach my $lane_set ( sort keys %{$merges} ) { + my @tag_indexes = sort { $a <=> $b } keys %{$merges->{$lane_set}}; + push @{$all_lims_objects->{'merges'}}, + (map { $merges->{$lane_set}->{$_} } @tag_indexes); + } + $all_lims_objects->{'singles'} = [ + sort {##no critic (BuiltinFunctions::ProhibitReverseSortBlock BuiltinFunctions::RequireSimpleSortBlock) + my $index_a = defined $a->tag_index ? + $a->tag_index : $TAG_INDEX_4_UNDEFINED; + my $index_b = defined $b->tag_index ? + $b->tag_index : $TAG_INDEX_4_UNDEFINED; + $a->position <=> $b->position || $index_a <=> $index_b + } + @singles + ]; + + # Sanity check. + my $num_objects = @{$all_lims_objects->{'merges'}} + + @{$all_lims_objects->{'singles'}}; + if ($num_objects == 0) { + croak 'Invalid aggregation by library, no objects returned'; } return $all_lims_objects; } +sub _check_merge_correctness{ + my $lib_lims = shift; + my @lanes = uniq map {$_->position} @{$lib_lims}; + if (@lanes != @{$lib_lims}) { + croak 'Intra-lane merge is detected'; + } + _check_value_is_unique('study_id', 'studies', $lib_lims); + _check_value_is_unique('tag_index', 'tag indexes', $lib_lims); + return; +} + +sub _check_value_is_unique { + my ($method_name, $property_name, $objects) = @_; + my @values = uniq + map { defined $_->$method_name ? $_->$method_name : 'undefined' } + @{$objects}; + if (@values != 1) { + croak "Multiple $property_name values in a potential merge by library"; + } + return; +} + =head2 create_tag_zero_object Using id_run and position values of this object, creates and returns diff --git a/t/40-st-lims-merge.t b/t/40-st-lims-merge.t index 01bc15e3..af3218bb 100644 --- a/t/40-st-lims-merge.t +++ b/t/40-st-lims-merge.t @@ -1,12 +1,16 @@ use strict; use warnings; -use Test::More tests => 4; +use Test::More tests => 8; use Test::Exception; +use List::MoreUtils qw/all none/; +use File::Slurp; +use File::Temp qw/tempdir/; +use_ok('npg_tracking::glossary::rpt'); use_ok('st::api::lims'); subtest 'Aggregation across lanes for pools' => sub { - plan tests => 85; + plan tests => 82; local $ENV{NPG_CACHED_SAMPLESHEET_FILE} = 't/data/test40_lims/samplesheet_novaseq4lanes.csv'; @@ -81,81 +85,11 @@ subtest 'Aggregation across lanes for pools' => sub { 'rpt list for tag 21 object'); is ($tag_first->rpt_list, '25846:1:1;25846:2:1;25846:3:1;25846:4:1', 'rpt list for tag 1 object'); + ok ((none {defined $_->id_run} ($tag_zero, $tag_spiked, $tag_first, $tag_last)), + "id_run not defined"); - my $expected = { - '25846:1:0;25846:2:0;25846:3:0;25846:4:0' => { - 'sample_id' => undef, - 'sample_name' => undef, - 'sample_common_name' => 'Homo sapiens', - 'study_id' => 5318, - 'study_name' => 'NovaSeq testing', - 'reference_genome' => 'Homo_sapiens (1000Genomes_hs37d5 + ensembl_75_transcriptome)', - 'library_id' => undef, - 'library_name' => undef, - 'library_type' => 'Standard', - 'default_tag_sequence' => undef, - 'study_alignments_in_bam' => 1, - 'study_contains_nonconsented_human' => 0 - }, - '25846:1:888;25846:2:888;25846:3:888;25846:4:888' => { - 'sample_id' => '1255141', - 'sample_name' => 'phiX_for_spiked_buffers', - 'sample_common_name' => undef, - 'study_id' => 198, - 'study_name' => 'Illumina Controls', - 'reference_genome' => undef, - 'library_id' => '17883061', - 'library_name' => '17883061', - 'library_type' => undef, - 'default_tag_sequence' => 'ACAACGCAATC', - 'study_alignments_in_bam' => 1, - 'study_contains_nonconsented_human' => 0 - }, - '25846:1:21;25846:2:21;25846:3:21;25846:4:21' => { - 'sample_id' => '3681772', - 'sample_name' => '5318STDY7462477', - 'sample_common_name' => 'Homo sapiens', - 'study_id' => 5318, - 'study_name' => 'NovaSeq testing', - 'reference_genome' => 'Homo_sapiens (1000Genomes_hs37d5 + ensembl_75_transcriptome)', - 'library_id' => '21059089', - 'library_name' => '21059089', - 'library_type' => 'Standard', - 'default_tag_sequence' => 'TCGAGCGT', - 'study_alignments_in_bam' => 1, - 'study_contains_nonconsented_human' => 0 - }, - '25846:1:1;25846:2:1;25846:3:1;25846:4:1' => { - 'sample_id' => '3681752', - 'sample_name' => '5318STDY7462457', - 'sample_common_name' => 'Homo sapiens', - 'study_id' => 5318, - 'study_name' => 'NovaSeq testing', - 'reference_genome' => 'Homo_sapiens (1000Genomes_hs37d5 + ensembl_75_transcriptome)', - 'library_id' => '21059039', - 'library_name' => '21059039', - 'library_type' => 'Standard', - 'default_tag_sequence' => 'ATCACGTT', - 'study_alignments_in_bam' => 1, - 'study_contains_nonconsented_human' => 0 - } - }; + _compare_properties([$tag_first, $tag_last, $tag_zero, $tag_spiked]); - for my $o (($tag_zero, $tag_spiked, $tag_first, $tag_last)) { - my $rpt_list = $o->rpt_list; - ok (!defined $o->id_run, "id_run not defined for $rpt_list"); - for my $method ( qw/ - sample_id sample_name sample_common_name - study_id study_name reference_genome - library_id library_name library_type - default_tag_sequence - /) { - is ($o->$method, $expected->{$rpt_list}->{$method}, "$method for $rpt_list"); - } - ok ($o->study_alignments_in_bam, "alignment true for $rpt_list"); - ok (!$o->study_contains_nonconsented_human, "nonconsented_human false for $rpt_list"); - } - ok ($tag_spiked->is_phix_spike, 'is phix spike'); ok (!$tag_first->is_phix_spike, 'is not phix spike'); ok (!$tag_zero->is_phix_spike, 'is not phix spike'); @@ -184,38 +118,16 @@ subtest 'Aggregation across lanes for pools' => sub { }; subtest 'Aggregation across lanes for non-pools' => sub { - plan tests => 13; + plan tests => 14; local $ENV{NPG_CACHED_SAMPLESHEET_FILE} = 't/data/test40_lims/samplesheet_rapidrun_nopool.csv'; my @merged = st::api::lims->new(id_run => 22672)->aggregate_xlanes(); - - my $l = $merged[0]; is (scalar @merged, 1, 'one object returned'); + my $l = $merged[0]; is ($l->rpt_list, '22672:1;22672:2', 'correct rpt_list'); ok (!defined $l->id_run, "id_run not defined"); ok (!$l->is_phix_spike, 'is not phix spike'); - - my $expected = { - 'sample_id' => '2917461', - 'sample_name' => '4600STDY6702635', - 'sample_common_name' => 'Homo sapiens', - 'study_id' => 4600, - 'study_name' => 'Osteosarcoma_WGBS', - 'reference_genome' => 'Not suitable for alignment', - 'library_id' => '18914827', - 'library_name' => '18914827', - 'library_type' => 'Bisulphite pre quality controlled', - 'study_alignments_in_bam' => 1, - 'study_contains_nonconsented_human' => 0 - }; - - for my $method ( qw/ - sample_id sample_name sample_common_name - study_id study_name reference_genome - library_id library_name library_type - /) { - is ($l->$method, $expected->{$method}, "$method"); - } + _compare_properties_2($l); }; subtest 'Aggregation across lanes for a tag' => sub { @@ -241,4 +153,286 @@ subtest 'Aggregation across lanes for a tag' => sub { } }; +subtest 'Aggregation by library for a NovaSeq standard flowcell' => sub { + plan tests => 101; + + local $ENV{NPG_CACHED_SAMPLESHEET_FILE} = + 't/data/test40_lims/samplesheet_novaseq4lanes.csv'; + # All lanes of this runs can be merged together. + # The pool contains a spiked-in control. + + my $id_run = 25846; + my @lane_lims = st::api::lims->new(id_run => $id_run)->children; + my $lims = st::api::lims->aggregate_libraries(\@lane_lims); + + for my $key_name (qw/singles merges/) { + ok (exists $lims->{$key_name}, "entry for $key_name exists"); + is (ref $lims->{$key_name}, 'ARRAY', 'the value is an array'); + } + is (keys %{$lims}, 2, 'no unexpected keys'); + is (@{$lims->{'singles'}}, 4, 'list of singles contains 4 objects'); + is (@{$lims->{'merges'}}, 21, 'list of merges contains 21 objects'); + + ok ( (all { $_->is_control } @{$lims->{'singles'}}), + 'all singles are spiked-in controls'); + ok ((none { defined $_->rpt_list } @{$lims->{'singles'}}), + 'rpt_list value is not defined for singles'); + ok ((all { $_->id_run == $id_run } @{$lims->{'singles'}}), + 'id_run is set correctly for singles'); + ok ((all { $_->tag_index == 888 } @{$lims->{'singles'}}), + 'tag_index is set correctly for singles'); + is ('1,2,3,4', join(q[,], map { $_->position } @{$lims->{'singles'}}), + 'objects are ordered in position acsending order'); + + my @rpt_lists = map { $_->rpt_list } @{$lims->{'merges'}}; + my @expected_rpt_lists = _generate_rpt_lists($id_run, [(1 .. 4)], [(1 .. 21)]); + is_deeply (\@rpt_lists, \@expected_rpt_lists, + 'merges list - correct object, correct sort order'); + + for my $method_name (qw/id_run position tag_index/) { + ok ((none { defined $_->$method_name } @{$lims->{'merges'}}), + "$method_name is not defined"); + } + ok ((all { $_->driver_type eq 'samplesheet' } @{$lims->{'merges'}}), + 'driver type is correct'); + + _compare_properties([$lims->{'merges'}->[0], $lims->{'merges'}->[20]]); + + # Select two lanes out of four. + $lims = st::api::lims->aggregate_libraries([$lane_lims[0], $lane_lims[2]]); + is (@{$lims->{'singles'}}, 2, 'list of singles contains 2 objects'); + is (@{$lims->{'merges'}}, 21, 'list of merges contains 21 objects'); + @rpt_lists = map { $_->rpt_list } @{$lims->{'merges'}}; + @expected_rpt_lists = _generate_rpt_lists($id_run, [1, 3], [(1 .. 21)]); + is_deeply (\@rpt_lists, \@expected_rpt_lists, + 'merges list - correct object, correct sort order'); + _compare_properties([$lims->{'merges'}->[0], $lims->{'merges'}->[20]]); + + # Select one lane only, No 2. Invoke the method on an instance. + my $lane = $lane_lims[1]; + $lims = $lane->aggregate_libraries([$lane]); + is (@{$lims->{'singles'}}, 22, 'list of singles contains 22 objects'); + is (@{$lims->{'merges'}}, 0, 'list of merges is empty'); + ok ((none { defined $_->rpt_list } @{$lims->{'singles'}}), + 'rpt_list value is not defined for singles'); + ok ((all { $_->id_run == $id_run && $_->position == 2} @{$lims->{'singles'}}), + 'id_run and position are set correctly for singles'); + my @tag_indexes = map { $_->tag_index } @{$lims->{'singles'}}; + is_deeply (\@tag_indexes, [(1 .. 21, 888)], + 'tag indexes are set correctly, correct sort order'); + ok ($lims->{'singles'}->[21]->is_control, 'tag 888 is flagged as control'); + ok ((none { $lims->{'singles'}->[$_]->is_control } (0 .. 20)), + 'all other objects are not marked as controls'); + _compare_properties([$lims->{'singles'}->[0], $lims->{'singles'}->[20]]); + + # Remove spiked-in controls from the samplesheet. + my @lines = grep { $_ !~ /phiX_for_spiked_buffers/ } + read_file($ENV{NPG_CACHED_SAMPLESHEET_FILE}); + my $file_path = join q[/], tempdir( CLEANUP => 1 ), 'samplesheet.csv'; + write_file($file_path, @lines); + local $ENV{NPG_CACHED_SAMPLESHEET_FILE} = $file_path; + @lane_lims = st::api::lims->new(id_run => $id_run)->children; + $lims = st::api::lims->aggregate_libraries(\@lane_lims); + is (@{$lims->{'singles'}}, 0, 'list of singles is empty'); + is (@{$lims->{'merges'}}, 21, 'list of merges contains 21 objects'); +}; + +subtest 'Aggregation by library for non-pools' => sub { + plan tests => 15; + + local $ENV{NPG_CACHED_SAMPLESHEET_FILE} = + 't/data/test40_lims/samplesheet_rapidrun_nopool.csv'; + my @lane_lims = st::api::lims->new(id_run => 22672)->children(); + my $lims = st::api::lims->aggregate_libraries(\@lane_lims); + is (@{$lims->{'singles'}}, 0, 'list of singles is empty'); + is (@{$lims->{'merges'}}, 1, 'list of merges contains one object'); + my $l = $lims->{'merges'}->[0]; + is ($l->rpt_list, '22672:1;22672:2', 'correct rpt_list'); + _compare_properties_2($l); + + $lims = st::api::lims->aggregate_libraries([$lane_lims[0]]); + is (@{$lims->{'singles'}}, 1, 'list of singles contains one object'); + is (@{$lims->{'merges'}}, 0, 'list of merges is empty'); +}; + +subtest 'Multiple lane sets in aggregation by library' => sub { + plan tests => 11; + + local $ENV{NPG_CACHED_SAMPLESHEET_FILE} = + 't/data/samplesheet/samplesheet_47995.csv'; + my $id_run = 47995; + my @lane_lims = st::api::lims->new(id_run => $id_run)->children(); + # Reverse the order of the argument list. + my $lims = st::api::lims->aggregate_libraries([reverse @lane_lims]); + + is (@{$lims->{'singles'}}, 8, 'list of singles contains 8 objects'); + ok ((all {$_->is_control} @{$lims->{'singles'}}), 'all singles are controls'); + ok ((all {$_->tag_index == 888} @{$lims->{'singles'}}), 'all singles have tag 888'); + is_deeply ([(1 .. 8)], [map {$_->position} @{$lims->{'singles'}}], + 'correct sort order'); + + is (@{$lims->{'merges'}}, 87, 'list of merges contains 87 objects'); + my %lanes_tags = ( + '1,2' => [(1 .. 17)], + '3,4' => [(1 .. 10)], + '5,6' => [(1 .. 22)], + '7,8' => [(1 .. 38)], + ); + my @expected_rpt_lists = (); + for my $lane_set (sort keys %lanes_tags) { + my @lanes = split q[,], $lane_set; + push @expected_rpt_lists, + _generate_rpt_lists($id_run, \@lanes, $lanes_tags{$lane_set}); + } + my @rpt_lists = map { $_->rpt_list } @{$lims->{'merges'}}; + is_deeply (\@rpt_lists, \@expected_rpt_lists, + 'merges list - correct object, correct sort order'); + + # Two lanes to be merged (1, 2), two lanes (4, 8) as is. + $lims = st::api::lims->aggregate_libraries( + [$lane_lims[3], $lane_lims[1], $lane_lims[0], $lane_lims[7]]); + + my $expected_num_singles = scalar @{$lanes_tags{'3,4'}} + + scalar @{$lanes_tags{'7,8'}} + + 4; # Two controls for lanes 1,2,4,8. + is (@{$lims->{'singles'}}, $expected_num_singles, + "list of singles contains $expected_num_singles objects"); + is (scalar (grep {$_->is_control} @{$lims->{'singles'}}), 4, + '4 singles are controls'); + + @expected_rpt_lists = map {join q[:], $id_run, $_, 888} (1,2); + push @expected_rpt_lists, + _generate_rpt_lists($id_run, [4], $lanes_tags{'3,4'}), "${id_run}:4:888"; + push @expected_rpt_lists, + _generate_rpt_lists($id_run, [8], $lanes_tags{'7,8'}), "${id_run}:8:888"; + @rpt_lists = (); + foreach my $l (@{$lims->{'singles'}}) { + push @rpt_lists, npg_tracking::glossary::rpt->deflate_rpts([$l]); + } + is_deeply (\@rpt_lists, \@expected_rpt_lists, + 'singles list - correct object, correct sort order'); + + is (@{$lims->{'merges'}}, 17, 'list of merges contains 17 objects'); + @expected_rpt_lists = _generate_rpt_lists($id_run, [1,2], $lanes_tags{'1,2'}); + @rpt_lists = map { $_->rpt_list } @{$lims->{'merges'}}; + is_deeply (\@rpt_lists, \@expected_rpt_lists, + 'merges list - correct object, correct sort order'); +}; + +sub _generate_rpt_lists { + my ($id_run, $positions, $tag_indexes) = @_; + my @expected_rpt_lists = (); + foreach my $tag_index (@{$tag_indexes}) { + my @rpt_list = (); + for my $position (@{$positions}) { + push @rpt_list, join q[:], $id_run, $position, $tag_index; + } + push @expected_rpt_lists, join q[;], @rpt_list; + } + return @expected_rpt_lists; +} + +sub _compare_properties { + my $lims_objects = shift; + + my $expected_props = [ + { + 'sample_id' => '3681752', + 'sample_name' => '5318STDY7462457', + 'sample_common_name' => 'Homo sapiens', + 'study_id' => 5318, + 'study_name' => 'NovaSeq testing', + 'reference_genome' => 'Homo_sapiens (1000Genomes_hs37d5 + ensembl_75_transcriptome)', + 'library_id' => '21059039', + 'library_name' => '21059039', + 'library_type' => 'Standard', + 'default_tag_sequence' => 'ATCACGTT', + 'study_alignments_in_bam' => 1, + 'study_contains_nonconsented_human' => 0 + }, + { + 'sample_id' => '3681772', + 'sample_name' => '5318STDY7462477', + 'sample_common_name' => 'Homo sapiens', + 'study_id' => 5318, + 'study_name' => 'NovaSeq testing', + 'reference_genome' => 'Homo_sapiens (1000Genomes_hs37d5 + ensembl_75_transcriptome)', + 'library_id' => '21059089', + 'library_name' => '21059089', + 'library_type' => 'Standard', + 'default_tag_sequence' => 'TCGAGCGT', + 'study_alignments_in_bam' => 1, + 'study_contains_nonconsented_human' => 0 + }, + { + 'sample_id' => undef, + 'sample_name' => undef, + 'sample_common_name' => 'Homo sapiens', + 'study_id' => 5318, + 'study_name' => 'NovaSeq testing', + 'reference_genome' => 'Homo_sapiens (1000Genomes_hs37d5 + ensembl_75_transcriptome)', + 'library_id' => undef, + 'library_name' => undef, + 'library_type' => 'Standard', + 'default_tag_sequence' => undef, + 'study_alignments_in_bam' => 1, + 'study_contains_nonconsented_human' => 0 + }, + { + 'sample_id' => '1255141', + 'sample_name' => 'phiX_for_spiked_buffers', + 'sample_common_name' => undef, + 'study_id' => 198, + 'study_name' => 'Illumina Controls', + 'reference_genome' => undef, + 'library_id' => '17883061', + 'library_name' => '17883061', + 'library_type' => undef, + 'default_tag_sequence' => 'ACAACGCAATC', + 'study_alignments_in_bam' => 1, + 'study_contains_nonconsented_human' => 0 + } + ]; + + my $num_objects = @{$lims_objects}; + for my $i ((0 .. $num_objects-1)) { + my $o = $lims_objects->[$i]; + my $description = $o->rpt_list ? $o->rpt_list : $o->to_string; + my $expected = $expected_props->[$i]; + for my $method ( qw/ + sample_id sample_name sample_common_name + study_id study_name reference_genome + library_id library_name library_type + default_tag_sequence study_alignments_in_bam + /) { + is ($o->$method, $expected->{$method}, "$method for $description"); + } + ok (!$o->study_contains_nonconsented_human, "nonconsented_human false for $description"); + } + + return; +} + +sub _compare_properties_2 { + my $obj = shift; + my $rpt_list = $obj->rpt_list; + my %expected = ( + 'sample_id' => '2917461', + 'sample_name' => '4600STDY6702635', + 'sample_common_name' => 'Homo sapiens', + 'study_id' => 4600, + 'study_name' => 'Osteosarcoma_WGBS', + 'reference_genome' => 'Not suitable for alignment', + 'library_id' => '18914827', + 'library_name' => '18914827', + 'library_type' => 'Bisulphite pre quality controlled', + 'study_alignments_in_bam' => 1, + ); + for my $method ( sort keys %expected) { + is ($obj->$method, $expected{$method}, "$method for $rpt_list"); + } + + return; +} + 1; diff --git a/t/40-st-lims.t b/t/40-st-lims.t index 37dba533..f659a86b 100644 --- a/t/40-st-lims.t +++ b/t/40-st-lims.t @@ -3,7 +3,6 @@ use warnings; use Test::More tests => 16; use Test::Exception; use Test::Warn; -use File::Temp qw/ tempdir /; use Moose::Meta::Class; my $num_delegated_methods = 45; diff --git a/t/data/samplesheet/samplesheet_47995.csv b/t/data/samplesheet/samplesheet_47995.csv new file mode 100644 index 00000000..e9b16751 --- /dev/null +++ b/t/data/samplesheet/samplesheet_47995.csv @@ -0,0 +1,184 @@ +[Data],,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, +Lane,Sample_ID,Sample_Name,GenomeFolder,Index,Index2,bait_name,default_library_type,default_tag_sequence,default_tagtwo_sequence,email_addresses,email_addresses_of_followers,email_addresses_of_managers,email_addresses_of_owners,gbs_plex_name,is_control,is_pool,lane_id,lane_priority,library_name,organism,organism_taxon_id,project_cost_code,project_id,project_name,purpose,qc_state,request_id,required_insert_size_range,sample_accession_number,sample_cohort,sample_common_name,sample_consent_withdrawn,sample_control_type,sample_description,sample_donor_id,sample_id,sample_is_control,sample_name,sample_public_name,sample_reference_genome,sample_supplier_name,spiked_phix_tag_index,study_accession_number,study_alignments_in_bam,study_contains_nonconsented_human,study_contains_nonconsented_xahuman,study_description,study_id,study_name,study_reference_genome,study_separate_y_chromosome_data,study_title,tag_index, +1,65934716,EGAN00004177411,,CCTTCTCT,ATTGAGAG,TE-95148282,Targeted NanoSeq Pulldown Twist,CCTTCTCT,ATTGAGAG,user1@my.com user2@my.com user3@my.com user4@my.com user5@my.com,user1@my.com user1@my.com user4@my.com user4@my.com user5@my.com user5@my.com,user2@my.com user2@my.com user3@my.com user3@my.com , ,,0,0,70004573,0,65934716,,9606,S4360,,,standard,,,from:100 to:400,EGAN00004177411,Normal,Homo sapiens,0,,,PD45703b_tds0003,8508809,0,6751STDY13219549,PD45703b_tds0003,,PD45703b_tds0003,888,EGAS00001005918,1,0,0,Targeted NanoSeq in synoviums from a number of donorsas.,6751,Targeted NanoSeq_Synovium,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,Targeted NanoSeq_Synovium,1, +1,65934633,EGAN00004177412,,TTTGAGGG,CCCAATCA,TE-95148282,Targeted NanoSeq Pulldown Twist,TTTGAGGG,CCCAATCA,user1@my.com user2@my.com user3@my.com user4@my.com user5@my.com,user1@my.com user1@my.com user4@my.com user4@my.com user5@my.com user5@my.com,user2@my.com user2@my.com user3@my.com user3@my.com , ,,0,0,70004573,0,65934633,,9606,S4360,,,standard,,,from:100 to:400,EGAN00004177412,Normal,Homo sapiens,0,,,PD45704b_tds0002,8508810,0,6751STDY13219550,PD45704b_tds0002,,PD45704b_tds0002,888,EGAS00001005918,1,0,0,Targeted NanoSeq in synoviums from a number of donorsas.,6751,Targeted NanoSeq_Synovium,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,Targeted NanoSeq_Synovium,2, +1,65934645,EGAN00004177418,,GGCCTGGC,TTGCAATC,TE-95148282,Targeted NanoSeq Pulldown Twist,GGCCTGGC,TTGCAATC,user1@my.com user2@my.com user3@my.com user4@my.com user5@my.com,user1@my.com user1@my.com user4@my.com user4@my.com user5@my.com user5@my.com,user2@my.com user2@my.com user3@my.com user3@my.com , ,,0,0,70004573,0,65934645,,9606,S4360,,,standard,,,from:100 to:400,EGAN00004177418,Normal,Homo sapiens,0,,,PD45704b_tds0003,8508815,0,6751STDY13219555,PD45704b_tds0003,,PD45704b_tds0003,888,EGAS00001005918,1,0,0,Targeted NanoSeq in synoviums from a number of donorsas.,6751,Targeted NanoSeq_Synovium,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,Targeted NanoSeq_Synovium,3, +1,65934657,EGAN00004177402,,AAAGTGAA,ATGGCAGC,TE-95148282,Targeted NanoSeq Pulldown Twist,AAAGTGAA,ATGGCAGC,user1@my.com user2@my.com user3@my.com user4@my.com user5@my.com,user1@my.com user1@my.com user4@my.com user4@my.com user5@my.com user5@my.com,user2@my.com user2@my.com user3@my.com user3@my.com , ,,0,0,70004573,0,65934657,,9606,S4360,,,standard,,,from:100 to:400,EGAN00004177402,Normal,Homo sapiens,0,,,PD43959b_tds0002,8508801,0,6751STDY13219541,PD43959b_tds0002,,PD43959b_tds0002,888,EGAS00001005918,1,0,0,Targeted NanoSeq in synoviums from a number of donorsas.,6751,Targeted NanoSeq_Synovium,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,Targeted NanoSeq_Synovium,4, +1,65934669,EGAN00004177414,,ACTCGAAA,CACGCGAC,TE-95148282,Targeted NanoSeq Pulldown Twist,ACTCGAAA,CACGCGAC,user1@my.com user2@my.com user3@my.com user4@my.com user5@my.com,user1@my.com user1@my.com user4@my.com user4@my.com user5@my.com user5@my.com,user2@my.com user2@my.com user3@my.com user3@my.com , ,,0,0,70004573,0,65934669,,9606,S4360,,,standard,,,from:100 to:400,EGAN00004177414,Normal,Homo sapiens,0,,,PD45707b_tds0002,8508812,0,6751STDY13219552,PD45707b_tds0002,,PD45707b_tds0002,888,EGAS00001005918,1,0,0,Targeted NanoSeq in synoviums from a number of donorsas.,6751,Targeted NanoSeq_Synovium,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,Targeted NanoSeq_Synovium,5, +1,65934681,EGAN00004177417,,CGATTGCA,ACCCAGAA,TE-95148282,Targeted NanoSeq Pulldown Twist,CGATTGCA,ACCCAGAA,user1@my.com user2@my.com user3@my.com user4@my.com user5@my.com,user1@my.com user1@my.com user4@my.com user4@my.com user5@my.com user5@my.com,user2@my.com user2@my.com user3@my.com user3@my.com , ,,0,0,70004573,0,65934681,,9606,S4360,,,standard,,,from:100 to:400,EGAN00004177417,Normal,Homo sapiens,0,,,PD49159b_tds0002,8508816,0,6751STDY13219556,PD49159b_tds0002,,PD49159b_tds0002,888,EGAS00001005918,1,0,0,Targeted NanoSeq in synoviums from a number of donorsas.,6751,Targeted NanoSeq_Synovium,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,Targeted NanoSeq_Synovium,6, +1,65934693,EGAN00004177419,,GTAAGCGA,GTTTGGAA,TE-95148282,Targeted NanoSeq Pulldown Twist,GTAAGCGA,GTTTGGAA,user1@my.com user2@my.com user3@my.com user4@my.com user5@my.com,user1@my.com user1@my.com user4@my.com user4@my.com user5@my.com user5@my.com,user2@my.com user2@my.com user3@my.com user3@my.com , ,,0,0,70004573,0,65934693,,9606,S4360,,,standard,,,from:100 to:400,EGAN00004177419,Normal,Homo sapiens,0,,,PD49134b_tds0002,8508817,0,6751STDY13219557,PD49134b_tds0002,,PD49134b_tds0002,888,EGAS00001005918,1,0,0,Targeted NanoSeq in synoviums from a number of donorsas.,6751,Targeted NanoSeq_Synovium,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,Targeted NanoSeq_Synovium,7, +1,65934705,EGAN00004177400,,TTCTTCAG,ACCACTGG,TE-95148282,Targeted NanoSeq Pulldown Twist,TTCTTCAG,ACCACTGG,user1@my.com user2@my.com user3@my.com user4@my.com user5@my.com,user1@my.com user1@my.com user4@my.com user4@my.com user5@my.com user5@my.com,user2@my.com user2@my.com user3@my.com user3@my.com , ,,0,0,70004573,0,65934705,,9606,S4360,,,standard,,,from:100 to:400,EGAN00004177400,Normal,Homo sapiens,0,,,PD43957b_tds0002,8508799,0,6751STDY13219539,PD43957b_tds0002,,PD43957b_tds0002,888,EGAS00001005918,1,0,0,Targeted NanoSeq in synoviums from a number of donorsas.,6751,Targeted NanoSeq_Synovium,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,Targeted NanoSeq_Synovium,8, +1,65934717,EGAN00004177407,,CGTGGATA,TTCCGGTG,TE-95148282,Targeted NanoSeq Pulldown Twist,CGTGGATA,TTCCGGTG,user1@my.com user2@my.com user3@my.com user4@my.com user5@my.com,user1@my.com user1@my.com user4@my.com user4@my.com user5@my.com user5@my.com,user2@my.com user2@my.com user3@my.com user3@my.com , ,,0,0,70004573,0,65934717,,9606,S4360,,,standard,,,from:100 to:400,EGAN00004177407,Normal,Homo sapiens,0,,,PD43958b_tds0002,8508800,0,6751STDY13219540,PD43958b_tds0002,,PD43958b_tds0002,888,EGAS00001005918,1,0,0,Targeted NanoSeq in synoviums from a number of donorsas.,6751,Targeted NanoSeq_Synovium,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,Targeted NanoSeq_Synovium,9, +1,65934634,EGAN00004177403,,CACTTTGC,AGTCGATG,TE-95148282,Targeted NanoSeq Pulldown Twist,CACTTTGC,AGTCGATG,user1@my.com user2@my.com user3@my.com user4@my.com user5@my.com,user1@my.com user1@my.com user4@my.com user4@my.com user5@my.com user5@my.com,user2@my.com user2@my.com user3@my.com user3@my.com , ,,0,0,70004573,0,65934634,,9606,S4360,,,standard,,,from:100 to:400,EGAN00004177403,Normal,Homo sapiens,0,,,PD43960b_tds0002,8508802,0,6751STDY13219542,PD43960b_tds0002,,PD43960b_tds0002,888,EGAS00001005918,1,0,0,Targeted NanoSeq in synoviums from a number of donorsas.,6751,Targeted NanoSeq_Synovium,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,Targeted NanoSeq_Synovium,10, +1,65934646,EGAN00004177404,,GTGTCGGT,GATGCGTC,TE-95148282,Targeted NanoSeq Pulldown Twist,GTGTCGGT,GATGCGTC,user1@my.com user2@my.com user3@my.com user4@my.com user5@my.com,user1@my.com user1@my.com user4@my.com user4@my.com user5@my.com user5@my.com,user2@my.com user2@my.com user3@my.com user3@my.com , ,,0,0,70004573,0,65934646,,9606,S4360,,,standard,,,from:100 to:400,EGAN00004177404,Normal,Homo sapiens,0,,,PD43961b_tds0002,8508803,0,6751STDY13219543,PD43961b_tds0002,,PD43961b_tds0002,888,EGAS00001005918,1,0,0,Targeted NanoSeq in synoviums from a number of donorsas.,6751,Targeted NanoSeq_Synovium,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,Targeted NanoSeq_Synovium,11, +1,65934658,EGAN00004177405,,ACGTAACA,ACATTCTA,TE-95148282,Targeted NanoSeq Pulldown Twist,ACGTAACA,ACATTCTA,user1@my.com user2@my.com user3@my.com user4@my.com user5@my.com,user1@my.com user1@my.com user4@my.com user4@my.com user5@my.com user5@my.com,user2@my.com user2@my.com user3@my.com user3@my.com , ,,0,0,70004573,0,65934658,,9606,S4360,,,standard,,,from:100 to:400,EGAN00004177405,Normal,Homo sapiens,0,,,PD43962b_tds0003,8508804,0,6751STDY13219544,PD43962b_tds0003,,PD43962b_tds0003,888,EGAS00001005918,1,0,0,Targeted NanoSeq in synoviums from a number of donorsas.,6751,Targeted NanoSeq_Synovium,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,Targeted NanoSeq_Synovium,12, +1,65934670,EGAN00004177406,,CTTTCGAC,CAGACTGG,TE-95148282,Targeted NanoSeq Pulldown Twist,CTTTCGAC,CAGACTGG,user1@my.com user2@my.com user3@my.com user4@my.com user5@my.com,user1@my.com user1@my.com user4@my.com user4@my.com user5@my.com user5@my.com,user2@my.com user2@my.com user3@my.com user3@my.com , ,,0,0,70004573,0,65934670,,9606,S4360,,,standard,,,from:100 to:400,EGAN00004177406,Normal,Homo sapiens,0,,,PD43964b_tds0002,8508805,0,6751STDY13219545,PD43964b_tds0002,,PD43964b_tds0002,888,EGAS00001005918,1,0,0,Targeted NanoSeq in synoviums from a number of donorsas.,6751,Targeted NanoSeq_Synovium,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,Targeted NanoSeq_Synovium,13, +1,65934682,EGAN00004177410,,GTGACCTA,ATAGCGTT,TE-95148282,Targeted NanoSeq Pulldown Twist,GTGACCTA,ATAGCGTT,user1@my.com user2@my.com user3@my.com user4@my.com user5@my.com,user1@my.com user1@my.com user4@my.com user4@my.com user5@my.com user5@my.com,user2@my.com user2@my.com user3@my.com user3@my.com , ,,0,0,70004573,0,65934682,,9606,S4360,,,standard,,,from:100 to:400,EGAN00004177410,Normal,Homo sapiens,0,,,PD43965b_tds0002,8508806,0,6751STDY13219546,PD43965b_tds0002,,PD43965b_tds0002,888,EGAS00001005918,1,0,0,Targeted NanoSeq in synoviums from a number of donorsas.,6751,Targeted NanoSeq_Synovium,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,Targeted NanoSeq_Synovium,14, +1,65934694,EGAN00004177408,,GTCCTAAC,TACGCCGA,TE-95148282,Targeted NanoSeq Pulldown Twist,GTCCTAAC,TACGCCGA,user1@my.com user2@my.com user3@my.com user4@my.com user5@my.com,user1@my.com user1@my.com user4@my.com user4@my.com user5@my.com user5@my.com,user2@my.com user2@my.com user3@my.com user3@my.com , ,,0,0,70004573,0,65934694,,9606,S4360,,,standard,,,from:100 to:400,EGAN00004177408,Normal,Homo sapiens,0,,,PD45701b_tds0002,8508807,0,6751STDY13219547,PD45701b_tds0002,,PD45701b_tds0002,888,EGAS00001005918,1,0,0,Targeted NanoSeq in synoviums from a number of donorsas.,6751,Targeted NanoSeq_Synovium,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,Targeted NanoSeq_Synovium,15, +1,65934706,EGAN00004177413,,GTGCAGGG,AGTCTGCC,TE-95148282,Targeted NanoSeq Pulldown Twist,GTGCAGGG,AGTCTGCC,user1@my.com user2@my.com user3@my.com user4@my.com user5@my.com,user1@my.com user1@my.com user4@my.com user4@my.com user5@my.com user5@my.com,user2@my.com user2@my.com user3@my.com user3@my.com , ,,0,0,70004573,0,65934706,,9606,S4360,,,standard,,,from:100 to:400,EGAN00004177413,Normal,Homo sapiens,0,,,PD45705b_tds0002,8508811,0,6751STDY13219551,PD45705b_tds0002,,PD45705b_tds0002,888,EGAS00001005918,1,0,0,Targeted NanoSeq in synoviums from a number of donorsas.,6751,Targeted NanoSeq_Synovium,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,Targeted NanoSeq_Synovium,16, +1,65934718,EGAN00004177416,,TGCGGTGT,GCAACCTA,TE-95148282,Targeted NanoSeq Pulldown Twist,TGCGGTGT,GCAACCTA,user1@my.com user2@my.com user3@my.com user4@my.com user5@my.com,user1@my.com user1@my.com user4@my.com user4@my.com user5@my.com user5@my.com,user2@my.com user2@my.com user3@my.com user3@my.com , ,,0,0,70004573,0,65934718,,9606,S4360,,,standard,,,from:100 to:400,EGAN00004177416,Normal,Homo sapiens,0,,,PD49155b_tds0002,8508814,0,6751STDY13219554,PD49155b_tds0002,,PD49155b_tds0002,888,EGAS00001005918,1,0,0,Targeted NanoSeq in synoviums from a number of donorsas.,6751,Targeted NanoSeq_Synovium,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,Targeted NanoSeq_Synovium,17, +1,51702674,phiX_for_spiked_buffers,,TGTGCAGC,ACTGATGT,,,TGTGCAGC,ACTGATGT,,,,,,1,0,70004573,0,51702674,,10847,,,,standard,,,,,,,0,,,,1255141,,phiX_for_spiked_buffers,,PhiX (Sanger-SNPs),,888,,1,0,0,None,198,Illumina Controls, ,0,,888, +2,65934716,EGAN00004177411,,CCTTCTCT,ATTGAGAG,TE-95148282,Targeted NanoSeq Pulldown Twist,CCTTCTCT,ATTGAGAG,user1@my.com user2@my.com user3@my.com user4@my.com user5@my.com,user1@my.com user1@my.com user4@my.com user4@my.com user5@my.com user5@my.com,user2@my.com user2@my.com user3@my.com user3@my.com , ,,0,0,70004574,0,65934716,,9606,S4360,,,standard,,,from:100 to:400,EGAN00004177411,Normal,Homo sapiens,0,,,PD45703b_tds0003,8508809,0,6751STDY13219549,PD45703b_tds0003,,PD45703b_tds0003,888,EGAS00001005918,1,0,0,Targeted NanoSeq in synoviums from a number of donorsas.,6751,Targeted NanoSeq_Synovium,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,Targeted NanoSeq_Synovium,1, +2,65934633,EGAN00004177412,,TTTGAGGG,CCCAATCA,TE-95148282,Targeted NanoSeq Pulldown Twist,TTTGAGGG,CCCAATCA,user1@my.com user2@my.com user3@my.com user4@my.com user5@my.com,user1@my.com user1@my.com user4@my.com user4@my.com user5@my.com user5@my.com,user2@my.com user2@my.com user3@my.com user3@my.com , ,,0,0,70004574,0,65934633,,9606,S4360,,,standard,,,from:100 to:400,EGAN00004177412,Normal,Homo sapiens,0,,,PD45704b_tds0002,8508810,0,6751STDY13219550,PD45704b_tds0002,,PD45704b_tds0002,888,EGAS00001005918,1,0,0,Targeted NanoSeq in synoviums from a number of donorsas.,6751,Targeted NanoSeq_Synovium,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,Targeted NanoSeq_Synovium,2, +2,65934645,EGAN00004177418,,GGCCTGGC,TTGCAATC,TE-95148282,Targeted NanoSeq Pulldown Twist,GGCCTGGC,TTGCAATC,user1@my.com user2@my.com user3@my.com user4@my.com user5@my.com,user1@my.com user1@my.com user4@my.com user4@my.com user5@my.com user5@my.com,user2@my.com user2@my.com user3@my.com user3@my.com , ,,0,0,70004574,0,65934645,,9606,S4360,,,standard,,,from:100 to:400,EGAN00004177418,Normal,Homo sapiens,0,,,PD45704b_tds0003,8508815,0,6751STDY13219555,PD45704b_tds0003,,PD45704b_tds0003,888,EGAS00001005918,1,0,0,Targeted NanoSeq in synoviums from a number of donorsas.,6751,Targeted NanoSeq_Synovium,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,Targeted NanoSeq_Synovium,3, +2,65934657,EGAN00004177402,,AAAGTGAA,ATGGCAGC,TE-95148282,Targeted NanoSeq Pulldown Twist,AAAGTGAA,ATGGCAGC,user1@my.com user2@my.com user3@my.com user4@my.com user5@my.com,user1@my.com user1@my.com user4@my.com user4@my.com user5@my.com user5@my.com,user2@my.com user2@my.com user3@my.com user3@my.com , ,,0,0,70004574,0,65934657,,9606,S4360,,,standard,,,from:100 to:400,EGAN00004177402,Normal,Homo sapiens,0,,,PD43959b_tds0002,8508801,0,6751STDY13219541,PD43959b_tds0002,,PD43959b_tds0002,888,EGAS00001005918,1,0,0,Targeted NanoSeq in synoviums from a number of donorsas.,6751,Targeted NanoSeq_Synovium,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,Targeted NanoSeq_Synovium,4, +2,65934669,EGAN00004177414,,ACTCGAAA,CACGCGAC,TE-95148282,Targeted NanoSeq Pulldown Twist,ACTCGAAA,CACGCGAC,user1@my.com user2@my.com user3@my.com user4@my.com user5@my.com,user1@my.com user1@my.com user4@my.com user4@my.com user5@my.com user5@my.com,user2@my.com user2@my.com user3@my.com user3@my.com , ,,0,0,70004574,0,65934669,,9606,S4360,,,standard,,,from:100 to:400,EGAN00004177414,Normal,Homo sapiens,0,,,PD45707b_tds0002,8508812,0,6751STDY13219552,PD45707b_tds0002,,PD45707b_tds0002,888,EGAS00001005918,1,0,0,Targeted NanoSeq in synoviums from a number of donorsas.,6751,Targeted NanoSeq_Synovium,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,Targeted NanoSeq_Synovium,5, +2,65934681,EGAN00004177417,,CGATTGCA,ACCCAGAA,TE-95148282,Targeted NanoSeq Pulldown Twist,CGATTGCA,ACCCAGAA,user1@my.com user2@my.com user3@my.com user4@my.com user5@my.com,user1@my.com user1@my.com user4@my.com user4@my.com user5@my.com user5@my.com,user2@my.com user2@my.com user3@my.com user3@my.com , ,,0,0,70004574,0,65934681,,9606,S4360,,,standard,,,from:100 to:400,EGAN00004177417,Normal,Homo sapiens,0,,,PD49159b_tds0002,8508816,0,6751STDY13219556,PD49159b_tds0002,,PD49159b_tds0002,888,EGAS00001005918,1,0,0,Targeted NanoSeq in synoviums from a number of donorsas.,6751,Targeted NanoSeq_Synovium,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,Targeted NanoSeq_Synovium,6, +2,65934693,EGAN00004177419,,GTAAGCGA,GTTTGGAA,TE-95148282,Targeted NanoSeq Pulldown Twist,GTAAGCGA,GTTTGGAA,user1@my.com user2@my.com user3@my.com user4@my.com user5@my.com,user1@my.com user1@my.com user4@my.com user4@my.com user5@my.com user5@my.com,user2@my.com user2@my.com user3@my.com user3@my.com , ,,0,0,70004574,0,65934693,,9606,S4360,,,standard,,,from:100 to:400,EGAN00004177419,Normal,Homo sapiens,0,,,PD49134b_tds0002,8508817,0,6751STDY13219557,PD49134b_tds0002,,PD49134b_tds0002,888,EGAS00001005918,1,0,0,Targeted NanoSeq in synoviums from a number of donorsas.,6751,Targeted NanoSeq_Synovium,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,Targeted NanoSeq_Synovium,7, +2,65934705,EGAN00004177400,,TTCTTCAG,ACCACTGG,TE-95148282,Targeted NanoSeq Pulldown Twist,TTCTTCAG,ACCACTGG,user1@my.com user2@my.com user3@my.com user4@my.com user5@my.com,user1@my.com user1@my.com user4@my.com user4@my.com user5@my.com user5@my.com,user2@my.com user2@my.com user3@my.com user3@my.com , ,,0,0,70004574,0,65934705,,9606,S4360,,,standard,,,from:100 to:400,EGAN00004177400,Normal,Homo sapiens,0,,,PD43957b_tds0002,8508799,0,6751STDY13219539,PD43957b_tds0002,,PD43957b_tds0002,888,EGAS00001005918,1,0,0,Targeted NanoSeq in synoviums from a number of donorsas.,6751,Targeted NanoSeq_Synovium,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,Targeted NanoSeq_Synovium,8, +2,65934717,EGAN00004177407,,CGTGGATA,TTCCGGTG,TE-95148282,Targeted NanoSeq Pulldown Twist,CGTGGATA,TTCCGGTG,user1@my.com user2@my.com user3@my.com user4@my.com user5@my.com,user1@my.com user1@my.com user4@my.com user4@my.com user5@my.com user5@my.com,user2@my.com user2@my.com user3@my.com user3@my.com , ,,0,0,70004574,0,65934717,,9606,S4360,,,standard,,,from:100 to:400,EGAN00004177407,Normal,Homo sapiens,0,,,PD43958b_tds0002,8508800,0,6751STDY13219540,PD43958b_tds0002,,PD43958b_tds0002,888,EGAS00001005918,1,0,0,Targeted NanoSeq in synoviums from a number of donorsas.,6751,Targeted NanoSeq_Synovium,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,Targeted NanoSeq_Synovium,9, +2,65934634,EGAN00004177403,,CACTTTGC,AGTCGATG,TE-95148282,Targeted NanoSeq Pulldown Twist,CACTTTGC,AGTCGATG,user1@my.com user2@my.com user3@my.com user4@my.com user5@my.com,user1@my.com user1@my.com user4@my.com user4@my.com user5@my.com user5@my.com,user2@my.com user2@my.com user3@my.com user3@my.com , ,,0,0,70004574,0,65934634,,9606,S4360,,,standard,,,from:100 to:400,EGAN00004177403,Normal,Homo sapiens,0,,,PD43960b_tds0002,8508802,0,6751STDY13219542,PD43960b_tds0002,,PD43960b_tds0002,888,EGAS00001005918,1,0,0,Targeted NanoSeq in synoviums from a number of donorsas.,6751,Targeted NanoSeq_Synovium,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,Targeted NanoSeq_Synovium,10, +2,65934646,EGAN00004177404,,GTGTCGGT,GATGCGTC,TE-95148282,Targeted NanoSeq Pulldown Twist,GTGTCGGT,GATGCGTC,user1@my.com user2@my.com user3@my.com user4@my.com user5@my.com,user1@my.com user1@my.com user4@my.com user4@my.com user5@my.com user5@my.com,user2@my.com user2@my.com user3@my.com user3@my.com , ,,0,0,70004574,0,65934646,,9606,S4360,,,standard,,,from:100 to:400,EGAN00004177404,Normal,Homo sapiens,0,,,PD43961b_tds0002,8508803,0,6751STDY13219543,PD43961b_tds0002,,PD43961b_tds0002,888,EGAS00001005918,1,0,0,Targeted NanoSeq in synoviums from a number of donorsas.,6751,Targeted NanoSeq_Synovium,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,Targeted NanoSeq_Synovium,11, +2,65934658,EGAN00004177405,,ACGTAACA,ACATTCTA,TE-95148282,Targeted NanoSeq Pulldown Twist,ACGTAACA,ACATTCTA,user1@my.com user2@my.com user3@my.com user4@my.com user5@my.com,user1@my.com user1@my.com user4@my.com user4@my.com user5@my.com user5@my.com,user2@my.com user2@my.com user3@my.com user3@my.com , ,,0,0,70004574,0,65934658,,9606,S4360,,,standard,,,from:100 to:400,EGAN00004177405,Normal,Homo sapiens,0,,,PD43962b_tds0003,8508804,0,6751STDY13219544,PD43962b_tds0003,,PD43962b_tds0003,888,EGAS00001005918,1,0,0,Targeted NanoSeq in synoviums from a number of donorsas.,6751,Targeted NanoSeq_Synovium,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,Targeted NanoSeq_Synovium,12, +2,65934670,EGAN00004177406,,CTTTCGAC,CAGACTGG,TE-95148282,Targeted NanoSeq Pulldown Twist,CTTTCGAC,CAGACTGG,user1@my.com user2@my.com user3@my.com user4@my.com user5@my.com,user1@my.com user1@my.com user4@my.com user4@my.com user5@my.com user5@my.com,user2@my.com user2@my.com user3@my.com user3@my.com , ,,0,0,70004574,0,65934670,,9606,S4360,,,standard,,,from:100 to:400,EGAN00004177406,Normal,Homo sapiens,0,,,PD43964b_tds0002,8508805,0,6751STDY13219545,PD43964b_tds0002,,PD43964b_tds0002,888,EGAS00001005918,1,0,0,Targeted NanoSeq in synoviums from a number of donorsas.,6751,Targeted NanoSeq_Synovium,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,Targeted NanoSeq_Synovium,13, +2,65934682,EGAN00004177410,,GTGACCTA,ATAGCGTT,TE-95148282,Targeted NanoSeq Pulldown Twist,GTGACCTA,ATAGCGTT,user1@my.com user2@my.com user3@my.com user4@my.com user5@my.com,user1@my.com user1@my.com user4@my.com user4@my.com user5@my.com user5@my.com,user2@my.com user2@my.com user3@my.com user3@my.com , ,,0,0,70004574,0,65934682,,9606,S4360,,,standard,,,from:100 to:400,EGAN00004177410,Normal,Homo sapiens,0,,,PD43965b_tds0002,8508806,0,6751STDY13219546,PD43965b_tds0002,,PD43965b_tds0002,888,EGAS00001005918,1,0,0,Targeted NanoSeq in synoviums from a number of donorsas.,6751,Targeted NanoSeq_Synovium,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,Targeted NanoSeq_Synovium,14, +2,65934694,EGAN00004177408,,GTCCTAAC,TACGCCGA,TE-95148282,Targeted NanoSeq Pulldown Twist,GTCCTAAC,TACGCCGA,user1@my.com user2@my.com user3@my.com user4@my.com user5@my.com,user1@my.com user1@my.com user4@my.com user4@my.com user5@my.com user5@my.com,user2@my.com user2@my.com user3@my.com user3@my.com , ,,0,0,70004574,0,65934694,,9606,S4360,,,standard,,,from:100 to:400,EGAN00004177408,Normal,Homo sapiens,0,,,PD45701b_tds0002,8508807,0,6751STDY13219547,PD45701b_tds0002,,PD45701b_tds0002,888,EGAS00001005918,1,0,0,Targeted NanoSeq in synoviums from a number of donorsas.,6751,Targeted NanoSeq_Synovium,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,Targeted NanoSeq_Synovium,15, +2,65934706,EGAN00004177413,,GTGCAGGG,AGTCTGCC,TE-95148282,Targeted NanoSeq Pulldown Twist,GTGCAGGG,AGTCTGCC,user1@my.com user2@my.com user3@my.com user4@my.com user5@my.com,user1@my.com user1@my.com user4@my.com user4@my.com user5@my.com user5@my.com,user2@my.com user2@my.com user3@my.com user3@my.com , ,,0,0,70004574,0,65934706,,9606,S4360,,,standard,,,from:100 to:400,EGAN00004177413,Normal,Homo sapiens,0,,,PD45705b_tds0002,8508811,0,6751STDY13219551,PD45705b_tds0002,,PD45705b_tds0002,888,EGAS00001005918,1,0,0,Targeted NanoSeq in synoviums from a number of donorsas.,6751,Targeted NanoSeq_Synovium,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,Targeted NanoSeq_Synovium,16, +2,65934718,EGAN00004177416,,TGCGGTGT,GCAACCTA,TE-95148282,Targeted NanoSeq Pulldown Twist,TGCGGTGT,GCAACCTA,user1@my.com user2@my.com user3@my.com user4@my.com user5@my.com,user1@my.com user1@my.com user4@my.com user4@my.com user5@my.com user5@my.com,user2@my.com user2@my.com user3@my.com user3@my.com , ,,0,0,70004574,0,65934718,,9606,S4360,,,standard,,,from:100 to:400,EGAN00004177416,Normal,Homo sapiens,0,,,PD49155b_tds0002,8508814,0,6751STDY13219554,PD49155b_tds0002,,PD49155b_tds0002,888,EGAS00001005918,1,0,0,Targeted NanoSeq in synoviums from a number of donorsas.,6751,Targeted NanoSeq_Synovium,Homo_sapiens (1000Genomes_hs37d5 %2B ensembl_75_transcriptome),0,Targeted NanoSeq_Synovium,17, +2,51702674,phiX_for_spiked_buffers,,TGTGCAGC,ACTGATGT,,,TGTGCAGC,ACTGATGT,,,,,,1,0,70004574,0,51702674,,10847,,,,standard,,,,,,,0,,,,1255141,,phiX_for_spiked_buffers,,PhiX (Sanger-SNPs),,888,,1,0,0,None,198,Illumina Controls, ,0,,888, +3,69723082,6050STDY14354621,,TTGATTCC,AGAAGCCC,,Duplex-Seq,TTGATTCC,AGAAGCCC,user1@my.com user2@my.com user3@my.com user4@my.com ,user1@my.com user1@my.com user4@my.com user4@my.com ,user2@my.com user2@my.com user3@my.com user3@my.com,user4@my.com user4@my.com,,0,0,70004575,0,69723082,,9606,S4360,,,standard,,,from:200 to:1500,,,Homo sapiens,0,,,PD47269g,9296053,0,6050STDY14354621,,Homo_sapiens (1000Genomes_hs37d5),ShearingNanoSeq_Rep1,888,EGAS00001004066,1,0,0,Bottleneck sequencing of human tissue.,6050,Bottleneck Sequencing of Human Tissue - (WGS),Homo_sapiens (1000Genomes_hs37d5),0,Bottleneck Sequencing Of Human Tissue (Wgs),1, +3,69723083,6050STDY14354622,,CATCATTT,ACCTAACT,,Duplex-Seq,CATCATTT,ACCTAACT,user1@my.com user2@my.com user3@my.com user4@my.com ,user1@my.com user1@my.com user4@my.com user4@my.com ,user2@my.com user2@my.com user3@my.com user3@my.com,user4@my.com user4@my.com,,0,0,70004575,0,69723083,,9606,S4360,,,standard,,,from:200 to:1500,,,Homo sapiens,0,,,PD47269g,9296054,0,6050STDY14354622,,Homo_sapiens (1000Genomes_hs37d5),ShearingNanoSeq_Rep2,888,EGAS00001004066,1,0,0,Bottleneck sequencing of human tissue.,6050,Bottleneck Sequencing of Human Tissue - (WGS),Homo_sapiens (1000Genomes_hs37d5),0,Bottleneck Sequencing Of Human Tissue (Wgs),2, +3,69723084,6050STDY14354623,,ATATGCGC,GCTAATTG,,Duplex-Seq,ATATGCGC,GCTAATTG,user1@my.com user2@my.com user3@my.com user4@my.com ,user1@my.com user1@my.com user4@my.com user4@my.com ,user2@my.com user2@my.com user3@my.com user3@my.com,user4@my.com user4@my.com,,0,0,70004575,0,69723084,,9606,S4360,,,standard,,,from:200 to:1500,,,Homo sapiens,0,,,PD47269g,9296055,0,6050STDY14354623,,Homo_sapiens (1000Genomes_hs37d5),ShearingUltraII_Rep1,888,EGAS00001004066,1,0,0,Bottleneck sequencing of human tissue.,6050,Bottleneck Sequencing of Human Tissue - (WGS),Homo_sapiens (1000Genomes_hs37d5),0,Bottleneck Sequencing Of Human Tissue (Wgs),3, +3,69723085,6050STDY14354624,,GTAAATGC,GGTAGGTG,,Duplex-Seq,GTAAATGC,GGTAGGTG,user1@my.com user2@my.com user3@my.com user4@my.com ,user1@my.com user1@my.com user4@my.com user4@my.com ,user2@my.com user2@my.com user3@my.com user3@my.com,user4@my.com user4@my.com,,0,0,70004575,0,69723085,,9606,S4360,,,standard,,,from:200 to:1500,,,Homo sapiens,0,,,PD47269g,9296056,0,6050STDY14354624,,Homo_sapiens (1000Genomes_hs37d5),ShearingUltraII_Rep2,888,EGAS00001004066,1,0,0,Bottleneck sequencing of human tissue.,6050,Bottleneck Sequencing of Human Tissue - (WGS),Homo_sapiens (1000Genomes_hs37d5),0,Bottleneck Sequencing Of Human Tissue (Wgs),4, +3,69723086,6050STDY14354625,,TTAGTAGA,AAATTCAC,,Duplex-Seq,TTAGTAGA,AAATTCAC,user1@my.com user2@my.com user3@my.com user4@my.com ,user1@my.com user1@my.com user4@my.com user4@my.com ,user2@my.com user2@my.com user3@my.com user3@my.com,user4@my.com user4@my.com,,0,0,70004575,0,69723086,,9606,S4360,,,standard,,,from:200 to:1500,,,Homo sapiens,0,,,PD47269g,9296057,0,6050STDY14354625,,Homo_sapiens (1000Genomes_hs37d5),USNanoSeq_Rep1,888,EGAS00001004066,1,0,0,Bottleneck sequencing of human tissue.,6050,Bottleneck Sequencing of Human Tissue - (WGS),Homo_sapiens (1000Genomes_hs37d5),0,Bottleneck Sequencing Of Human Tissue (Wgs),5, +3,69723087,6050STDY14354626,,CTGATGCT,CTGGATTT,,Duplex-Seq,CTGATGCT,CTGGATTT,user1@my.com user2@my.com user3@my.com user4@my.com ,user1@my.com user1@my.com user4@my.com user4@my.com ,user2@my.com user2@my.com user3@my.com user3@my.com,user4@my.com user4@my.com,,0,0,70004575,0,69723087,,9606,S4360,,,standard,,,from:200 to:1500,,,Homo sapiens,0,,,PD47269g,9296058,0,6050STDY14354626,,Homo_sapiens (1000Genomes_hs37d5),USNanoSeq_Rep2,888,EGAS00001004066,1,0,0,Bottleneck sequencing of human tissue.,6050,Bottleneck Sequencing of Human Tissue - (WGS),Homo_sapiens (1000Genomes_hs37d5),0,Bottleneck Sequencing Of Human Tissue (Wgs),6, +3,69723088,6050STDY14354627,,CTTGCGTG,TACTGCCG,,Duplex-Seq,CTTGCGTG,TACTGCCG,user1@my.com user2@my.com user3@my.com user4@my.com ,user1@my.com user1@my.com user4@my.com user4@my.com ,user2@my.com user2@my.com user3@my.com user3@my.com,user4@my.com user4@my.com,,0,0,70004575,0,69723088,,9606,S4360,,,standard,,,from:200 to:1500,,,Homo sapiens,0,,,PD47269g,9296059,0,6050STDY14354627,,Homo_sapiens (1000Genomes_hs37d5),R1.1NanoSeq_Rep1,888,EGAS00001004066,1,0,0,Bottleneck sequencing of human tissue.,6050,Bottleneck Sequencing of Human Tissue - (WGS),Homo_sapiens (1000Genomes_hs37d5),0,Bottleneck Sequencing Of Human Tissue (Wgs),7, +3,69723089,6050STDY14354628,,CTGTCACA,CATTTATC,,Duplex-Seq,CTGTCACA,CATTTATC,user1@my.com user2@my.com user3@my.com user4@my.com ,user1@my.com user1@my.com user4@my.com user4@my.com ,user2@my.com user2@my.com user3@my.com user3@my.com,user4@my.com user4@my.com,,0,0,70004575,0,69723089,,9606,S4360,,,standard,,,from:200 to:1500,,,Homo sapiens,0,,,PD47269g,9296060,0,6050STDY14354628,,Homo_sapiens (1000Genomes_hs37d5),R1.1NanoSeq_Rep2,888,EGAS00001004066,1,0,0,Bottleneck sequencing of human tissue.,6050,Bottleneck Sequencing of Human Tissue - (WGS),Homo_sapiens (1000Genomes_hs37d5),0,Bottleneck Sequencing Of Human Tissue (Wgs),8, +3,69723090,6050STDY14354629,,GCCTAGGG,AGTTGGAG,,Duplex-Seq,GCCTAGGG,AGTTGGAG,user1@my.com user2@my.com user3@my.com user4@my.com ,user1@my.com user1@my.com user4@my.com user4@my.com ,user2@my.com user2@my.com user3@my.com user3@my.com,user4@my.com user4@my.com,,0,0,70004575,0,69723090,,9606,S4360,,,standard,,,from:200 to:1500,,,Homo sapiens,0,,,PD47269g,9296061,0,6050STDY14354629,,Homo_sapiens (1000Genomes_hs37d5),USUII_Rep1,888,EGAS00001004066,1,0,0,Bottleneck sequencing of human tissue.,6050,Bottleneck Sequencing of Human Tissue - (WGS),Homo_sapiens (1000Genomes_hs37d5),0,Bottleneck Sequencing Of Human Tissue (Wgs),9, +3,69723091,6050STDY14354630,,CTTACTCA,TCTCGACC,,Duplex-Seq,CTTACTCA,TCTCGACC,user1@my.com user2@my.com user3@my.com user4@my.com ,user1@my.com user1@my.com user4@my.com user4@my.com ,user2@my.com user2@my.com user3@my.com user3@my.com,user4@my.com user4@my.com,,0,0,70004575,0,69723091,,9606,S4360,,,standard,,,from:200 to:1500,,,Homo sapiens,0,,,PD47269g,9296062,0,6050STDY14354630,,Homo_sapiens (1000Genomes_hs37d5),USUII_Rep2,888,EGAS00001004066,1,0,0,Bottleneck sequencing of human tissue.,6050,Bottleneck Sequencing of Human Tissue - (WGS),Homo_sapiens (1000Genomes_hs37d5),0,Bottleneck Sequencing Of Human Tissue (Wgs),10, +3,51702674,phiX_for_spiked_buffers,,TGTGCAGC,ACTGATGT,,,TGTGCAGC,ACTGATGT,,,,,,1,0,70004575,0,51702674,,10847,,,,standard,,,,,,,0,,,,1255141,,phiX_for_spiked_buffers,,PhiX (Sanger-SNPs),,888,,1,0,0,None,198,Illumina Controls, ,0,,888, +4,69723082,6050STDY14354621,,TTGATTCC,AGAAGCCC,,Duplex-Seq,TTGATTCC,AGAAGCCC,user1@my.com user2@my.com user3@my.com user4@my.com ,user1@my.com user1@my.com user4@my.com user4@my.com ,user2@my.com user2@my.com user3@my.com user3@my.com,user4@my.com user4@my.com,,0,0,70004576,0,69723082,,9606,S4360,,,standard,,,from:200 to:1500,,,Homo sapiens,0,,,PD47269g,9296053,0,6050STDY14354621,,Homo_sapiens (1000Genomes_hs37d5),ShearingNanoSeq_Rep1,888,EGAS00001004066,1,0,0,Bottleneck sequencing of human tissue.,6050,Bottleneck Sequencing of Human Tissue - (WGS),Homo_sapiens (1000Genomes_hs37d5),0,Bottleneck Sequencing Of Human Tissue (Wgs),1, +4,69723083,6050STDY14354622,,CATCATTT,ACCTAACT,,Duplex-Seq,CATCATTT,ACCTAACT,user1@my.com user2@my.com user3@my.com user4@my.com ,user1@my.com user1@my.com user4@my.com user4@my.com ,user2@my.com user2@my.com user3@my.com user3@my.com,user4@my.com user4@my.com,,0,0,70004576,0,69723083,,9606,S4360,,,standard,,,from:200 to:1500,,,Homo sapiens,0,,,PD47269g,9296054,0,6050STDY14354622,,Homo_sapiens (1000Genomes_hs37d5),ShearingNanoSeq_Rep2,888,EGAS00001004066,1,0,0,Bottleneck sequencing of human tissue.,6050,Bottleneck Sequencing of Human Tissue - (WGS),Homo_sapiens (1000Genomes_hs37d5),0,Bottleneck Sequencing Of Human Tissue (Wgs),2, +4,69723084,6050STDY14354623,,ATATGCGC,GCTAATTG,,Duplex-Seq,ATATGCGC,GCTAATTG,user1@my.com user2@my.com user3@my.com user4@my.com ,user1@my.com user1@my.com user4@my.com user4@my.com ,user2@my.com user2@my.com user3@my.com user3@my.com,user4@my.com user4@my.com,,0,0,70004576,0,69723084,,9606,S4360,,,standard,,,from:200 to:1500,,,Homo sapiens,0,,,PD47269g,9296055,0,6050STDY14354623,,Homo_sapiens (1000Genomes_hs37d5),ShearingUltraII_Rep1,888,EGAS00001004066,1,0,0,Bottleneck sequencing of human tissue.,6050,Bottleneck Sequencing of Human Tissue - (WGS),Homo_sapiens (1000Genomes_hs37d5),0,Bottleneck Sequencing Of Human Tissue (Wgs),3, +4,69723085,6050STDY14354624,,GTAAATGC,GGTAGGTG,,Duplex-Seq,GTAAATGC,GGTAGGTG,user1@my.com user2@my.com user3@my.com user4@my.com ,user1@my.com user1@my.com user4@my.com user4@my.com ,user2@my.com user2@my.com user3@my.com user3@my.com,user4@my.com user4@my.com,,0,0,70004576,0,69723085,,9606,S4360,,,standard,,,from:200 to:1500,,,Homo sapiens,0,,,PD47269g,9296056,0,6050STDY14354624,,Homo_sapiens (1000Genomes_hs37d5),ShearingUltraII_Rep2,888,EGAS00001004066,1,0,0,Bottleneck sequencing of human tissue.,6050,Bottleneck Sequencing of Human Tissue - (WGS),Homo_sapiens (1000Genomes_hs37d5),0,Bottleneck Sequencing Of Human Tissue (Wgs),4, +4,69723086,6050STDY14354625,,TTAGTAGA,AAATTCAC,,Duplex-Seq,TTAGTAGA,AAATTCAC,user1@my.com user2@my.com user3@my.com user4@my.com ,user1@my.com user1@my.com user4@my.com user4@my.com ,user2@my.com user2@my.com user3@my.com user3@my.com,user4@my.com user4@my.com,,0,0,70004576,0,69723086,,9606,S4360,,,standard,,,from:200 to:1500,,,Homo sapiens,0,,,PD47269g,9296057,0,6050STDY14354625,,Homo_sapiens (1000Genomes_hs37d5),USNanoSeq_Rep1,888,EGAS00001004066,1,0,0,Bottleneck sequencing of human tissue.,6050,Bottleneck Sequencing of Human Tissue - (WGS),Homo_sapiens (1000Genomes_hs37d5),0,Bottleneck Sequencing Of Human Tissue (Wgs),5, +4,69723087,6050STDY14354626,,CTGATGCT,CTGGATTT,,Duplex-Seq,CTGATGCT,CTGGATTT,user1@my.com user2@my.com user3@my.com user4@my.com ,user1@my.com user1@my.com user4@my.com user4@my.com ,user2@my.com user2@my.com user3@my.com user3@my.com,user4@my.com user4@my.com,,0,0,70004576,0,69723087,,9606,S4360,,,standard,,,from:200 to:1500,,,Homo sapiens,0,,,PD47269g,9296058,0,6050STDY14354626,,Homo_sapiens (1000Genomes_hs37d5),USNanoSeq_Rep2,888,EGAS00001004066,1,0,0,Bottleneck sequencing of human tissue.,6050,Bottleneck Sequencing of Human Tissue - (WGS),Homo_sapiens (1000Genomes_hs37d5),0,Bottleneck Sequencing Of Human Tissue (Wgs),6, +4,69723088,6050STDY14354627,,CTTGCGTG,TACTGCCG,,Duplex-Seq,CTTGCGTG,TACTGCCG,user1@my.com user2@my.com user3@my.com user4@my.com ,user1@my.com user1@my.com user4@my.com user4@my.com ,user2@my.com user2@my.com user3@my.com user3@my.com,user4@my.com user4@my.com,,0,0,70004576,0,69723088,,9606,S4360,,,standard,,,from:200 to:1500,,,Homo sapiens,0,,,PD47269g,9296059,0,6050STDY14354627,,Homo_sapiens (1000Genomes_hs37d5),R1.1NanoSeq_Rep1,888,EGAS00001004066,1,0,0,Bottleneck sequencing of human tissue.,6050,Bottleneck Sequencing of Human Tissue - (WGS),Homo_sapiens (1000Genomes_hs37d5),0,Bottleneck Sequencing Of Human Tissue (Wgs),7, +4,69723089,6050STDY14354628,,CTGTCACA,CATTTATC,,Duplex-Seq,CTGTCACA,CATTTATC,user1@my.com user2@my.com user3@my.com user4@my.com ,user1@my.com user1@my.com user4@my.com user4@my.com ,user2@my.com user2@my.com user3@my.com user3@my.com,user4@my.com user4@my.com,,0,0,70004576,0,69723089,,9606,S4360,,,standard,,,from:200 to:1500,,,Homo sapiens,0,,,PD47269g,9296060,0,6050STDY14354628,,Homo_sapiens (1000Genomes_hs37d5),R1.1NanoSeq_Rep2,888,EGAS00001004066,1,0,0,Bottleneck sequencing of human tissue.,6050,Bottleneck Sequencing of Human Tissue - (WGS),Homo_sapiens (1000Genomes_hs37d5),0,Bottleneck Sequencing Of Human Tissue (Wgs),8, +4,69723090,6050STDY14354629,,GCCTAGGG,AGTTGGAG,,Duplex-Seq,GCCTAGGG,AGTTGGAG,user1@my.com user2@my.com user3@my.com user4@my.com ,user1@my.com user1@my.com user4@my.com user4@my.com ,user2@my.com user2@my.com user3@my.com user3@my.com,user4@my.com user4@my.com,,0,0,70004576,0,69723090,,9606,S4360,,,standard,,,from:200 to:1500,,,Homo sapiens,0,,,PD47269g,9296061,0,6050STDY14354629,,Homo_sapiens (1000Genomes_hs37d5),USUII_Rep1,888,EGAS00001004066,1,0,0,Bottleneck sequencing of human tissue.,6050,Bottleneck Sequencing of Human Tissue - (WGS),Homo_sapiens (1000Genomes_hs37d5),0,Bottleneck Sequencing Of Human Tissue (Wgs),9, +4,69723091,6050STDY14354630,,CTTACTCA,TCTCGACC,,Duplex-Seq,CTTACTCA,TCTCGACC,user1@my.com user2@my.com user3@my.com user4@my.com ,user1@my.com user1@my.com user4@my.com user4@my.com ,user2@my.com user2@my.com user3@my.com user3@my.com,user4@my.com user4@my.com,,0,0,70004576,0,69723091,,9606,S4360,,,standard,,,from:200 to:1500,,,Homo sapiens,0,,,PD47269g,9296062,0,6050STDY14354630,,Homo_sapiens (1000Genomes_hs37d5),USUII_Rep2,888,EGAS00001004066,1,0,0,Bottleneck sequencing of human tissue.,6050,Bottleneck Sequencing of Human Tissue - (WGS),Homo_sapiens (1000Genomes_hs37d5),0,Bottleneck Sequencing Of Human Tissue (Wgs),10, +4,51702674,phiX_for_spiked_buffers,,TGTGCAGC,ACTGATGT,,,TGTGCAGC,ACTGATGT,,,,,,1,0,70004576,0,51702674,,10847,,,,standard,,,,,,,0,,,,1255141,,phiX_for_spiked_buffers,,PhiX (Sanger-SNPs),,888,,1,0,0,None,198,Illumina Controls, ,0,,888, +5,69725419,6050STDY14355627,,CGGAGACA,ATGCGACT,,Duplex-Seq,CGGAGACA,ATGCGACT,user1@my.com user2@my.com user3@my.com user4@my.com ,user1@my.com user1@my.com user4@my.com user4@my.com ,user2@my.com user2@my.com user3@my.com user3@my.com,user4@my.com user4@my.com,,0,0,70004577,0,69725419,,9606,S4360,,,standard,,,from:200 to:1500,,,Homo sapiens,0,,,PD37586k,9296963,0,6050STDY14355627,,Homo_sapiens (1000Genomes_hs37d5),ShearingNS_FF3,888,EGAS00001004066,1,0,0,Bottleneck sequencing of human tissue.,6050,Bottleneck Sequencing of Human Tissue - (WGS),Homo_sapiens (1000Genomes_hs37d5),0,Bottleneck Sequencing Of Human Tissue (Wgs),1, +5,69725420,6050STDY14355628,,GTTAACGT,TCACAAAC,,Duplex-Seq,GTTAACGT,TCACAAAC,user1@my.com user2@my.com user3@my.com user4@my.com ,user1@my.com user1@my.com user4@my.com user4@my.com ,user2@my.com user2@my.com user3@my.com user3@my.com,user4@my.com user4@my.com,,0,0,70004577,0,69725420,,9606,S4360,,,standard,,,from:200 to:1500,,,Homo sapiens,0,,,PD37586k,9296964,0,6050STDY14355628,,Homo_sapiens (1000Genomes_hs37d5),ShearingNS_FF3PE,888,EGAS00001004066,1,0,0,Bottleneck sequencing of human tissue.,6050,Bottleneck Sequencing of Human Tissue - (WGS),Homo_sapiens (1000Genomes_hs37d5),0,Bottleneck Sequencing Of Human Tissue (Wgs),2, +5,69725421,6050STDY14355629,,CATTTATT,AGGAGAAA,,Duplex-Seq,CATTTATT,AGGAGAAA,user1@my.com user2@my.com user3@my.com user4@my.com ,user1@my.com user1@my.com user4@my.com user4@my.com ,user2@my.com user2@my.com user3@my.com user3@my.com,user4@my.com user4@my.com,,0,0,70004577,0,69725421,,9606,S4360,,,standard,,,from:200 to:1500,,,Homo sapiens,0,,,PD37586k,9296965,0,6050STDY14355629,,Homo_sapiens (1000Genomes_hs37d5),ShearingNS_FF17,888,EGAS00001004066,1,0,0,Bottleneck sequencing of human tissue.,6050,Bottleneck Sequencing of Human Tissue - (WGS),Homo_sapiens (1000Genomes_hs37d5),0,Bottleneck Sequencing Of Human Tissue (Wgs),3, +5,69725422,6050STDY14355630,,TTAGCGCA,TCGGCAAA,,Duplex-Seq,TTAGCGCA,TCGGCAAA,user1@my.com user2@my.com user3@my.com user4@my.com ,user1@my.com user1@my.com user4@my.com user4@my.com ,user2@my.com user2@my.com user3@my.com user3@my.com,user4@my.com user4@my.com,,0,0,70004577,0,69725422,,9606,S4360,,,standard,,,from:200 to:1500,,,Homo sapiens,0,,,PD37586k,9296966,0,6050STDY14355630,,Homo_sapiens (1000Genomes_hs37d5),ShearingNS_FF17PE,888,EGAS00001004066,1,0,0,Bottleneck sequencing of human tissue.,6050,Bottleneck Sequencing of Human Tissue - (WGS),Homo_sapiens (1000Genomes_hs37d5),0,Bottleneck Sequencing Of Human Tissue (Wgs),4, +5,69725423,6050STDY14355631,,TATTCGTA,CTGAAAGA,,Duplex-Seq,TATTCGTA,CTGAAAGA,user1@my.com user2@my.com user3@my.com user4@my.com ,user1@my.com user1@my.com user4@my.com user4@my.com ,user2@my.com user2@my.com user3@my.com user3@my.com,user4@my.com user4@my.com,,0,0,70004577,0,69725423,,9606,S4360,,,standard,,,from:200 to:1500,,,Homo sapiens,0,,,PD37586k,9296967,0,6050STDY14355631,,Homo_sapiens (1000Genomes_hs37d5),ShearingNS_Matched,888,EGAS00001004066,1,0,0,Bottleneck sequencing of human tissue.,6050,Bottleneck Sequencing of Human Tissue - (WGS),Homo_sapiens (1000Genomes_hs37d5),0,Bottleneck Sequencing Of Human Tissue (Wgs),5, +5,69725424,6050STDY14355632,,CTAACTAG,GAAAGGTA,,Duplex-Seq,CTAACTAG,GAAAGGTA,user1@my.com user2@my.com user3@my.com user4@my.com ,user1@my.com user1@my.com user4@my.com user4@my.com ,user2@my.com user2@my.com user3@my.com user3@my.com,user4@my.com user4@my.com,,0,0,70004577,0,69725424,,9606,S4360,,,standard,,,from:200 to:1500,,,Homo sapiens,0,,,PD37586k,9296968,0,6050STDY14355632,,Homo_sapiens (1000Genomes_hs37d5),ShearingUII_FF3,888,EGAS00001004066,1,0,0,Bottleneck sequencing of human tissue.,6050,Bottleneck Sequencing of Human Tissue - (WGS),Homo_sapiens (1000Genomes_hs37d5),0,Bottleneck Sequencing Of Human Tissue (Wgs),6, +5,69725425,6050STDY14355633,,TTTGCAAA,ACACATAT,,Duplex-Seq,TTTGCAAA,ACACATAT,user1@my.com user2@my.com user3@my.com user4@my.com ,user1@my.com user1@my.com user4@my.com user4@my.com ,user2@my.com user2@my.com user3@my.com user3@my.com,user4@my.com user4@my.com,,0,0,70004577,0,69725425,,9606,S4360,,,standard,,,from:200 to:1500,,,Homo sapiens,0,,,PD37586k,9296969,0,6050STDY14355633,,Homo_sapiens (1000Genomes_hs37d5),ShearingUII_FF3PE,888,EGAS00001004066,1,0,0,Bottleneck sequencing of human tissue.,6050,Bottleneck Sequencing of Human Tissue - (WGS),Homo_sapiens (1000Genomes_hs37d5),0,Bottleneck Sequencing Of Human Tissue (Wgs),7, +5,69725426,6050STDY14355634,,CTTAGAGT,GAACCCTG,,Duplex-Seq,CTTAGAGT,GAACCCTG,user1@my.com user2@my.com user3@my.com user4@my.com ,user1@my.com user1@my.com user4@my.com user4@my.com ,user2@my.com user2@my.com user3@my.com user3@my.com,user4@my.com user4@my.com,,0,0,70004577,0,69725426,,9606,S4360,,,standard,,,from:200 to:1500,,,Homo sapiens,0,,,PD37586k,9296970,0,6050STDY14355634,,Homo_sapiens (1000Genomes_hs37d5),ShearingUII_FF17,888,EGAS00001004066,1,0,0,Bottleneck sequencing of human tissue.,6050,Bottleneck Sequencing of Human Tissue - (WGS),Homo_sapiens (1000Genomes_hs37d5),0,Bottleneck Sequencing Of Human Tissue (Wgs),8, +5,69725427,6050STDY14355635,,GGTGGGAA,TAAACCCA,,Duplex-Seq,GGTGGGAA,TAAACCCA,user1@my.com user2@my.com user3@my.com user4@my.com ,user1@my.com user1@my.com user4@my.com user4@my.com ,user2@my.com user2@my.com user3@my.com user3@my.com,user4@my.com user4@my.com,,0,0,70004577,0,69725427,,9606,S4360,,,standard,,,from:200 to:1500,,,Homo sapiens,0,,,PD37586k,9296971,0,6050STDY14355635,,Homo_sapiens (1000Genomes_hs37d5),ShearingUII_FF17PE,888,EGAS00001004066,1,0,0,Bottleneck sequencing of human tissue.,6050,Bottleneck Sequencing of Human Tissue - (WGS),Homo_sapiens (1000Genomes_hs37d5),0,Bottleneck Sequencing Of Human Tissue (Wgs),9, +5,69725428,6050STDY14355636,,CCTCCTAA,ATGCACTG,,Duplex-Seq,CCTCCTAA,ATGCACTG,user1@my.com user2@my.com user3@my.com user4@my.com ,user1@my.com user1@my.com user4@my.com user4@my.com ,user2@my.com user2@my.com user3@my.com user3@my.com,user4@my.com user4@my.com,,0,0,70004577,0,69725428,,9606,S4360,,,standard,,,from:200 to:1500,,,Homo sapiens,0,,,PD37586k,9296972,0,6050STDY14355636,,Homo_sapiens (1000Genomes_hs37d5),USNS_FF3,888,EGAS00001004066,1,0,0,Bottleneck sequencing of human tissue.,6050,Bottleneck Sequencing of Human Tissue - (WGS),Homo_sapiens (1000Genomes_hs37d5),0,Bottleneck Sequencing Of Human Tissue (Wgs),10, +5,69725429,6050STDY14355637,,TTTCCAGT,ATGCCAAA,,Duplex-Seq,TTTCCAGT,ATGCCAAA,user1@my.com user2@my.com user3@my.com user4@my.com ,user1@my.com user1@my.com user4@my.com user4@my.com ,user2@my.com user2@my.com user3@my.com user3@my.com,user4@my.com user4@my.com,,0,0,70004577,0,69725429,,9606,S4360,,,standard,,,from:200 to:1500,,,Homo sapiens,0,,,PD37586k,9296973,0,6050STDY14355637,,Homo_sapiens (1000Genomes_hs37d5),USNS_FF3PE,888,EGAS00001004066,1,0,0,Bottleneck sequencing of human tissue.,6050,Bottleneck Sequencing of Human Tissue - (WGS),Homo_sapiens (1000Genomes_hs37d5),0,Bottleneck Sequencing Of Human Tissue (Wgs),11, +5,69725430,6050STDY14355638,,GATATGTG,CCTACTAA,,Duplex-Seq,GATATGTG,CCTACTAA,user1@my.com user2@my.com user3@my.com user4@my.com ,user1@my.com user1@my.com user4@my.com user4@my.com ,user2@my.com user2@my.com user3@my.com user3@my.com,user4@my.com user4@my.com,,0,0,70004577,0,69725430,,9606,S4360,,,standard,,,from:200 to:1500,,,Homo sapiens,0,,,PD37586k,9296974,0,6050STDY14355638,,Homo_sapiens (1000Genomes_hs37d5),USNS_FF17,888,EGAS00001004066,1,0,0,Bottleneck sequencing of human tissue.,6050,Bottleneck Sequencing of Human Tissue - (WGS),Homo_sapiens (1000Genomes_hs37d5),0,Bottleneck Sequencing Of Human Tissue (Wgs),12, +5,69725431,6050STDY14355639,,CATGAATC,ATAAACTT,,Duplex-Seq,CATGAATC,ATAAACTT,user1@my.com user2@my.com user3@my.com user4@my.com ,user1@my.com user1@my.com user4@my.com user4@my.com ,user2@my.com user2@my.com user3@my.com user3@my.com,user4@my.com user4@my.com,,0,0,70004577,0,69725431,,9606,S4360,,,standard,,,from:200 to:1500,,,Homo sapiens,0,,,PD37586k,9296975,0,6050STDY14355639,,Homo_sapiens (1000Genomes_hs37d5),USNS_FF17PE,888,EGAS00001004066,1,0,0,Bottleneck sequencing of human tissue.,6050,Bottleneck Sequencing of Human Tissue - (WGS),Homo_sapiens (1000Genomes_hs37d5),0,Bottleneck Sequencing Of Human Tissue (Wgs),13, +5,69725432,6050STDY14355640,,AGTAGTAG,AGGCCGTT,,Duplex-Seq,AGTAGTAG,AGGCCGTT,user1@my.com user2@my.com user3@my.com user4@my.com ,user1@my.com user1@my.com user4@my.com user4@my.com ,user2@my.com user2@my.com user3@my.com user3@my.com,user4@my.com user4@my.com,,0,0,70004577,0,69725432,,9606,S4360,,,standard,,,from:200 to:1500,,,Homo sapiens,0,,,PD37586k,9296976,0,6050STDY14355640,,Homo_sapiens (1000Genomes_hs37d5),R1.1NS_FF3,888,EGAS00001004066,1,0,0,Bottleneck sequencing of human tissue.,6050,Bottleneck Sequencing of Human Tissue - (WGS),Homo_sapiens (1000Genomes_hs37d5),0,Bottleneck Sequencing Of Human Tissue (Wgs),14, +5,69725433,6050STDY14355641,,GAGGGCCG,ACCCTCCA,,Duplex-Seq,GAGGGCCG,ACCCTCCA,user1@my.com user2@my.com user3@my.com user4@my.com ,user1@my.com user1@my.com user4@my.com user4@my.com ,user2@my.com user2@my.com user3@my.com user3@my.com,user4@my.com user4@my.com,,0,0,70004577,0,69725433,,9606,S4360,,,standard,,,from:200 to:1500,,,Homo sapiens,0,,,PD37586k,9296977,0,6050STDY14355641,,Homo_sapiens (1000Genomes_hs37d5),R1.1NS_FF3PE,888,EGAS00001004066,1,0,0,Bottleneck sequencing of human tissue.,6050,Bottleneck Sequencing of Human Tissue - (WGS),Homo_sapiens (1000Genomes_hs37d5),0,Bottleneck Sequencing Of Human Tissue (Wgs),15, +5,69725434,6050STDY14355642,,TTGTCCAA,CGGATCCC,,Duplex-Seq,TTGTCCAA,CGGATCCC,user1@my.com user2@my.com user3@my.com user4@my.com ,user1@my.com user1@my.com user4@my.com user4@my.com ,user2@my.com user2@my.com user3@my.com user3@my.com,user4@my.com user4@my.com,,0,0,70004577,0,69725434,,9606,S4360,,,standard,,,from:200 to:1500,,,Homo sapiens,0,,,PD37586k,9296978,0,6050STDY14355642,,Homo_sapiens (1000Genomes_hs37d5),R1.1NS_FF17,888,EGAS00001004066,1,0,0,Bottleneck sequencing of human tissue.,6050,Bottleneck Sequencing of Human Tissue - (WGS),Homo_sapiens (1000Genomes_hs37d5),0,Bottleneck Sequencing Of Human Tissue (Wgs),16, +5,69725435,6050STDY14355643,,CGCAACTG,TGCCATCC,,Duplex-Seq,CGCAACTG,TGCCATCC,user1@my.com user2@my.com user3@my.com user4@my.com ,user1@my.com user1@my.com user4@my.com user4@my.com ,user2@my.com user2@my.com user3@my.com user3@my.com,user4@my.com user4@my.com,,0,0,70004577,0,69725435,,9606,S4360,,,standard,,,from:200 to:1500,,,Homo sapiens,0,,,PD37586k,9296979,0,6050STDY14355643,,Homo_sapiens (1000Genomes_hs37d5),R1.1NS_FF17PE,888,EGAS00001004066,1,0,0,Bottleneck sequencing of human tissue.,6050,Bottleneck Sequencing of Human Tissue - (WGS),Homo_sapiens (1000Genomes_hs37d5),0,Bottleneck Sequencing Of Human Tissue (Wgs),17, +5,69725436,6050STDY14355644,,CATATTCT,CGGACAAG,,Duplex-Seq,CATATTCT,CGGACAAG,user1@my.com user2@my.com user3@my.com user4@my.com ,user1@my.com user1@my.com user4@my.com user4@my.com ,user2@my.com user2@my.com user3@my.com user3@my.com,user4@my.com user4@my.com,,0,0,70004577,0,69725436,,9606,S4360,,,standard,,,from:200 to:1500,,,Homo sapiens,0,,,PD37586k,9296980,0,6050STDY14355644,,Homo_sapiens (1000Genomes_hs37d5),R1.1NS_Macthed,888,EGAS00001004066,1,0,0,Bottleneck sequencing of human tissue.,6050,Bottleneck Sequencing of Human Tissue - (WGS),Homo_sapiens (1000Genomes_hs37d5),0,Bottleneck Sequencing Of Human Tissue (Wgs),18, +5,69725437,6050STDY14355645,,GCGGAGAC,CATTGCAC,,Duplex-Seq,GCGGAGAC,CATTGCAC,user1@my.com user2@my.com user3@my.com user4@my.com ,user1@my.com user1@my.com user4@my.com user4@my.com ,user2@my.com user2@my.com user3@my.com user3@my.com,user4@my.com user4@my.com,,0,0,70004577,0,69725437,,9606,S4360,,,standard,,,from:200 to:1500,,,Homo sapiens,0,,,PD37586k,9296981,0,6050STDY14355645,,Homo_sapiens (1000Genomes_hs37d5),USUII_FF3,888,EGAS00001004066,1,0,0,Bottleneck sequencing of human tissue.,6050,Bottleneck Sequencing of Human Tissue - (WGS),Homo_sapiens (1000Genomes_hs37d5),0,Bottleneck Sequencing Of Human Tissue (Wgs),19, +5,69725438,6050STDY14355646,,TTGGGTGA,ATAAAGCG,,Duplex-Seq,TTGGGTGA,ATAAAGCG,user1@my.com user2@my.com user3@my.com user4@my.com ,user1@my.com user1@my.com user4@my.com user4@my.com ,user2@my.com user2@my.com user3@my.com user3@my.com,user4@my.com user4@my.com,,0,0,70004577,0,69725438,,9606,S4360,,,standard,,,from:200 to:1500,,,Homo sapiens,0,,,PD37586k,9296982,0,6050STDY14355646,,Homo_sapiens (1000Genomes_hs37d5),USUII_FF3PE,888,EGAS00001004066,1,0,0,Bottleneck sequencing of human tissue.,6050,Bottleneck Sequencing of Human Tissue - (WGS),Homo_sapiens (1000Genomes_hs37d5),0,Bottleneck Sequencing Of Human Tissue (Wgs),20, +5,69725439,6050STDY14355647,,GTTCAAAG,TGCATAAA,,Duplex-Seq,GTTCAAAG,TGCATAAA,user1@my.com user2@my.com user3@my.com user4@my.com ,user1@my.com user1@my.com user4@my.com user4@my.com ,user2@my.com user2@my.com user3@my.com user3@my.com,user4@my.com user4@my.com,,0,0,70004577,0,69725439,,9606,S4360,,,standard,,,from:200 to:1500,,,Homo sapiens,0,,,PD37586k,9296983,0,6050STDY14355647,,Homo_sapiens (1000Genomes_hs37d5),USUII_FF17,888,EGAS00001004066,1,0,0,Bottleneck sequencing of human tissue.,6050,Bottleneck Sequencing of Human Tissue - (WGS),Homo_sapiens (1000Genomes_hs37d5),0,Bottleneck Sequencing Of Human Tissue (Wgs),21, +5,69725440,6050STDY14355648,,TTAACTTA,GTCATCCT,,Duplex-Seq,TTAACTTA,GTCATCCT,user1@my.com user2@my.com user3@my.com user4@my.com ,user1@my.com user1@my.com user4@my.com user4@my.com ,user2@my.com user2@my.com user3@my.com user3@my.com,user4@my.com user4@my.com,,0,0,70004577,0,69725440,,9606,S4360,,,standard,,,from:200 to:1500,,,Homo sapiens,0,,,PD37586k,9296984,0,6050STDY14355648,,Homo_sapiens (1000Genomes_hs37d5),USUII_FF17PE,888,EGAS00001004066,1,0,0,Bottleneck sequencing of human tissue.,6050,Bottleneck Sequencing of Human Tissue - (WGS),Homo_sapiens (1000Genomes_hs37d5),0,Bottleneck Sequencing Of Human Tissue (Wgs),22, +5,51702674,phiX_for_spiked_buffers,,TGTGCAGC,ACTGATGT,,,TGTGCAGC,ACTGATGT,,,,,,1,0,70004577,0,51702674,,10847,,,,standard,,,,,,,0,,,,1255141,,phiX_for_spiked_buffers,,PhiX (Sanger-SNPs),,888,,1,0,0,None,198,Illumina Controls, ,0,,888, +6,69725419,6050STDY14355627,,CGGAGACA,ATGCGACT,,Duplex-Seq,CGGAGACA,ATGCGACT,user1@my.com user2@my.com user3@my.com user4@my.com ,user1@my.com user1@my.com user4@my.com user4@my.com ,user2@my.com user2@my.com user3@my.com user3@my.com,user4@my.com user4@my.com,,0,0,70004578,0,69725419,,9606,S4360,,,standard,,,from:200 to:1500,,,Homo sapiens,0,,,PD37586k,9296963,0,6050STDY14355627,,Homo_sapiens (1000Genomes_hs37d5),ShearingNS_FF3,888,EGAS00001004066,1,0,0,Bottleneck sequencing of human tissue.,6050,Bottleneck Sequencing of Human Tissue - (WGS),Homo_sapiens (1000Genomes_hs37d5),0,Bottleneck Sequencing Of Human Tissue (Wgs),1, +6,69725420,6050STDY14355628,,GTTAACGT,TCACAAAC,,Duplex-Seq,GTTAACGT,TCACAAAC,user1@my.com user2@my.com user3@my.com user4@my.com ,user1@my.com user1@my.com user4@my.com user4@my.com ,user2@my.com user2@my.com user3@my.com user3@my.com,user4@my.com user4@my.com,,0,0,70004578,0,69725420,,9606,S4360,,,standard,,,from:200 to:1500,,,Homo sapiens,0,,,PD37586k,9296964,0,6050STDY14355628,,Homo_sapiens (1000Genomes_hs37d5),ShearingNS_FF3PE,888,EGAS00001004066,1,0,0,Bottleneck sequencing of human tissue.,6050,Bottleneck Sequencing of Human Tissue - (WGS),Homo_sapiens (1000Genomes_hs37d5),0,Bottleneck Sequencing Of Human Tissue (Wgs),2, +6,69725421,6050STDY14355629,,CATTTATT,AGGAGAAA,,Duplex-Seq,CATTTATT,AGGAGAAA,user1@my.com user2@my.com user3@my.com user4@my.com ,user1@my.com user1@my.com user4@my.com user4@my.com ,user2@my.com user2@my.com user3@my.com user3@my.com,user4@my.com user4@my.com,,0,0,70004578,0,69725421,,9606,S4360,,,standard,,,from:200 to:1500,,,Homo sapiens,0,,,PD37586k,9296965,0,6050STDY14355629,,Homo_sapiens (1000Genomes_hs37d5),ShearingNS_FF17,888,EGAS00001004066,1,0,0,Bottleneck sequencing of human tissue.,6050,Bottleneck Sequencing of Human Tissue - (WGS),Homo_sapiens (1000Genomes_hs37d5),0,Bottleneck Sequencing Of Human Tissue (Wgs),3, +6,69725422,6050STDY14355630,,TTAGCGCA,TCGGCAAA,,Duplex-Seq,TTAGCGCA,TCGGCAAA,user1@my.com user2@my.com user3@my.com user4@my.com ,user1@my.com user1@my.com user4@my.com user4@my.com ,user2@my.com user2@my.com user3@my.com user3@my.com,user4@my.com user4@my.com,,0,0,70004578,0,69725422,,9606,S4360,,,standard,,,from:200 to:1500,,,Homo sapiens,0,,,PD37586k,9296966,0,6050STDY14355630,,Homo_sapiens (1000Genomes_hs37d5),ShearingNS_FF17PE,888,EGAS00001004066,1,0,0,Bottleneck sequencing of human tissue.,6050,Bottleneck Sequencing of Human Tissue - (WGS),Homo_sapiens (1000Genomes_hs37d5),0,Bottleneck Sequencing Of Human Tissue (Wgs),4, +6,69725423,6050STDY14355631,,TATTCGTA,CTGAAAGA,,Duplex-Seq,TATTCGTA,CTGAAAGA,user1@my.com user2@my.com user3@my.com user4@my.com ,user1@my.com user1@my.com user4@my.com user4@my.com ,user2@my.com user2@my.com user3@my.com user3@my.com,user4@my.com user4@my.com,,0,0,70004578,0,69725423,,9606,S4360,,,standard,,,from:200 to:1500,,,Homo sapiens,0,,,PD37586k,9296967,0,6050STDY14355631,,Homo_sapiens (1000Genomes_hs37d5),ShearingNS_Matched,888,EGAS00001004066,1,0,0,Bottleneck sequencing of human tissue.,6050,Bottleneck Sequencing of Human Tissue - (WGS),Homo_sapiens (1000Genomes_hs37d5),0,Bottleneck Sequencing Of Human Tissue (Wgs),5, +6,69725424,6050STDY14355632,,CTAACTAG,GAAAGGTA,,Duplex-Seq,CTAACTAG,GAAAGGTA,user1@my.com user2@my.com user3@my.com user4@my.com ,user1@my.com user1@my.com user4@my.com user4@my.com ,user2@my.com user2@my.com user3@my.com user3@my.com,user4@my.com user4@my.com,,0,0,70004578,0,69725424,,9606,S4360,,,standard,,,from:200 to:1500,,,Homo sapiens,0,,,PD37586k,9296968,0,6050STDY14355632,,Homo_sapiens (1000Genomes_hs37d5),ShearingUII_FF3,888,EGAS00001004066,1,0,0,Bottleneck sequencing of human tissue.,6050,Bottleneck Sequencing of Human Tissue - (WGS),Homo_sapiens (1000Genomes_hs37d5),0,Bottleneck Sequencing Of Human Tissue (Wgs),6, +6,69725425,6050STDY14355633,,TTTGCAAA,ACACATAT,,Duplex-Seq,TTTGCAAA,ACACATAT,user1@my.com user2@my.com user3@my.com user4@my.com ,user1@my.com user1@my.com user4@my.com user4@my.com ,user2@my.com user2@my.com user3@my.com user3@my.com,user4@my.com user4@my.com,,0,0,70004578,0,69725425,,9606,S4360,,,standard,,,from:200 to:1500,,,Homo sapiens,0,,,PD37586k,9296969,0,6050STDY14355633,,Homo_sapiens (1000Genomes_hs37d5),ShearingUII_FF3PE,888,EGAS00001004066,1,0,0,Bottleneck sequencing of human tissue.,6050,Bottleneck Sequencing of Human Tissue - (WGS),Homo_sapiens (1000Genomes_hs37d5),0,Bottleneck Sequencing Of Human Tissue (Wgs),7, +6,69725426,6050STDY14355634,,CTTAGAGT,GAACCCTG,,Duplex-Seq,CTTAGAGT,GAACCCTG,user1@my.com user2@my.com user3@my.com user4@my.com ,user1@my.com user1@my.com user4@my.com user4@my.com ,user2@my.com user2@my.com user3@my.com user3@my.com,user4@my.com user4@my.com,,0,0,70004578,0,69725426,,9606,S4360,,,standard,,,from:200 to:1500,,,Homo sapiens,0,,,PD37586k,9296970,0,6050STDY14355634,,Homo_sapiens (1000Genomes_hs37d5),ShearingUII_FF17,888,EGAS00001004066,1,0,0,Bottleneck sequencing of human tissue.,6050,Bottleneck Sequencing of Human Tissue - (WGS),Homo_sapiens (1000Genomes_hs37d5),0,Bottleneck Sequencing Of Human Tissue (Wgs),8, +6,69725427,6050STDY14355635,,GGTGGGAA,TAAACCCA,,Duplex-Seq,GGTGGGAA,TAAACCCA,user1@my.com user2@my.com user3@my.com user4@my.com ,user1@my.com user1@my.com user4@my.com user4@my.com ,user2@my.com user2@my.com user3@my.com user3@my.com,user4@my.com user4@my.com,,0,0,70004578,0,69725427,,9606,S4360,,,standard,,,from:200 to:1500,,,Homo sapiens,0,,,PD37586k,9296971,0,6050STDY14355635,,Homo_sapiens (1000Genomes_hs37d5),ShearingUII_FF17PE,888,EGAS00001004066,1,0,0,Bottleneck sequencing of human tissue.,6050,Bottleneck Sequencing of Human Tissue - (WGS),Homo_sapiens (1000Genomes_hs37d5),0,Bottleneck Sequencing Of Human Tissue (Wgs),9, +6,69725428,6050STDY14355636,,CCTCCTAA,ATGCACTG,,Duplex-Seq,CCTCCTAA,ATGCACTG,user1@my.com user2@my.com user3@my.com user4@my.com ,user1@my.com user1@my.com user4@my.com user4@my.com ,user2@my.com user2@my.com user3@my.com user3@my.com,user4@my.com user4@my.com,,0,0,70004578,0,69725428,,9606,S4360,,,standard,,,from:200 to:1500,,,Homo sapiens,0,,,PD37586k,9296972,0,6050STDY14355636,,Homo_sapiens (1000Genomes_hs37d5),USNS_FF3,888,EGAS00001004066,1,0,0,Bottleneck sequencing of human tissue.,6050,Bottleneck Sequencing of Human Tissue - (WGS),Homo_sapiens (1000Genomes_hs37d5),0,Bottleneck Sequencing Of Human Tissue (Wgs),10, +6,69725429,6050STDY14355637,,TTTCCAGT,ATGCCAAA,,Duplex-Seq,TTTCCAGT,ATGCCAAA,user1@my.com user2@my.com user3@my.com user4@my.com ,user1@my.com user1@my.com user4@my.com user4@my.com ,user2@my.com user2@my.com user3@my.com user3@my.com,user4@my.com user4@my.com,,0,0,70004578,0,69725429,,9606,S4360,,,standard,,,from:200 to:1500,,,Homo sapiens,0,,,PD37586k,9296973,0,6050STDY14355637,,Homo_sapiens (1000Genomes_hs37d5),USNS_FF3PE,888,EGAS00001004066,1,0,0,Bottleneck sequencing of human tissue.,6050,Bottleneck Sequencing of Human Tissue - (WGS),Homo_sapiens (1000Genomes_hs37d5),0,Bottleneck Sequencing Of Human Tissue (Wgs),11, +6,69725430,6050STDY14355638,,GATATGTG,CCTACTAA,,Duplex-Seq,GATATGTG,CCTACTAA,user1@my.com user2@my.com user3@my.com user4@my.com ,user1@my.com user1@my.com user4@my.com user4@my.com ,user2@my.com user2@my.com user3@my.com user3@my.com,user4@my.com user4@my.com,,0,0,70004578,0,69725430,,9606,S4360,,,standard,,,from:200 to:1500,,,Homo sapiens,0,,,PD37586k,9296974,0,6050STDY14355638,,Homo_sapiens (1000Genomes_hs37d5),USNS_FF17,888,EGAS00001004066,1,0,0,Bottleneck sequencing of human tissue.,6050,Bottleneck Sequencing of Human Tissue - (WGS),Homo_sapiens (1000Genomes_hs37d5),0,Bottleneck Sequencing Of Human Tissue (Wgs),12, +6,69725431,6050STDY14355639,,CATGAATC,ATAAACTT,,Duplex-Seq,CATGAATC,ATAAACTT,user1@my.com user2@my.com user3@my.com user4@my.com ,user1@my.com user1@my.com user4@my.com user4@my.com ,user2@my.com user2@my.com user3@my.com user3@my.com,user4@my.com user4@my.com,,0,0,70004578,0,69725431,,9606,S4360,,,standard,,,from:200 to:1500,,,Homo sapiens,0,,,PD37586k,9296975,0,6050STDY14355639,,Homo_sapiens (1000Genomes_hs37d5),USNS_FF17PE,888,EGAS00001004066,1,0,0,Bottleneck sequencing of human tissue.,6050,Bottleneck Sequencing of Human Tissue - (WGS),Homo_sapiens (1000Genomes_hs37d5),0,Bottleneck Sequencing Of Human Tissue (Wgs),13, +6,69725432,6050STDY14355640,,AGTAGTAG,AGGCCGTT,,Duplex-Seq,AGTAGTAG,AGGCCGTT,user1@my.com user2@my.com user3@my.com user4@my.com ,user1@my.com user1@my.com user4@my.com user4@my.com ,user2@my.com user2@my.com user3@my.com user3@my.com,user4@my.com user4@my.com,,0,0,70004578,0,69725432,,9606,S4360,,,standard,,,from:200 to:1500,,,Homo sapiens,0,,,PD37586k,9296976,0,6050STDY14355640,,Homo_sapiens (1000Genomes_hs37d5),R1.1NS_FF3,888,EGAS00001004066,1,0,0,Bottleneck sequencing of human tissue.,6050,Bottleneck Sequencing of Human Tissue - (WGS),Homo_sapiens (1000Genomes_hs37d5),0,Bottleneck Sequencing Of Human Tissue (Wgs),14, +6,69725433,6050STDY14355641,,GAGGGCCG,ACCCTCCA,,Duplex-Seq,GAGGGCCG,ACCCTCCA,user1@my.com user2@my.com user3@my.com user4@my.com ,user1@my.com user1@my.com user4@my.com user4@my.com ,user2@my.com user2@my.com user3@my.com user3@my.com,user4@my.com user4@my.com,,0,0,70004578,0,69725433,,9606,S4360,,,standard,,,from:200 to:1500,,,Homo sapiens,0,,,PD37586k,9296977,0,6050STDY14355641,,Homo_sapiens (1000Genomes_hs37d5),R1.1NS_FF3PE,888,EGAS00001004066,1,0,0,Bottleneck sequencing of human tissue.,6050,Bottleneck Sequencing of Human Tissue - (WGS),Homo_sapiens (1000Genomes_hs37d5),0,Bottleneck Sequencing Of Human Tissue (Wgs),15, +6,69725434,6050STDY14355642,,TTGTCCAA,CGGATCCC,,Duplex-Seq,TTGTCCAA,CGGATCCC,user1@my.com user2@my.com user3@my.com user4@my.com ,user1@my.com user1@my.com user4@my.com user4@my.com ,user2@my.com user2@my.com user3@my.com user3@my.com,user4@my.com user4@my.com,,0,0,70004578,0,69725434,,9606,S4360,,,standard,,,from:200 to:1500,,,Homo sapiens,0,,,PD37586k,9296978,0,6050STDY14355642,,Homo_sapiens (1000Genomes_hs37d5),R1.1NS_FF17,888,EGAS00001004066,1,0,0,Bottleneck sequencing of human tissue.,6050,Bottleneck Sequencing of Human Tissue - (WGS),Homo_sapiens (1000Genomes_hs37d5),0,Bottleneck Sequencing Of Human Tissue (Wgs),16, +6,69725435,6050STDY14355643,,CGCAACTG,TGCCATCC,,Duplex-Seq,CGCAACTG,TGCCATCC,user1@my.com user2@my.com user3@my.com user4@my.com ,user1@my.com user1@my.com user4@my.com user4@my.com ,user2@my.com user2@my.com user3@my.com user3@my.com,user4@my.com user4@my.com,,0,0,70004578,0,69725435,,9606,S4360,,,standard,,,from:200 to:1500,,,Homo sapiens,0,,,PD37586k,9296979,0,6050STDY14355643,,Homo_sapiens (1000Genomes_hs37d5),R1.1NS_FF17PE,888,EGAS00001004066,1,0,0,Bottleneck sequencing of human tissue.,6050,Bottleneck Sequencing of Human Tissue - (WGS),Homo_sapiens (1000Genomes_hs37d5),0,Bottleneck Sequencing Of Human Tissue (Wgs),17, +6,69725436,6050STDY14355644,,CATATTCT,CGGACAAG,,Duplex-Seq,CATATTCT,CGGACAAG,user1@my.com user2@my.com user3@my.com user4@my.com ,user1@my.com user1@my.com user4@my.com user4@my.com ,user2@my.com user2@my.com user3@my.com user3@my.com,user4@my.com user4@my.com,,0,0,70004578,0,69725436,,9606,S4360,,,standard,,,from:200 to:1500,,,Homo sapiens,0,,,PD37586k,9296980,0,6050STDY14355644,,Homo_sapiens (1000Genomes_hs37d5),R1.1NS_Macthed,888,EGAS00001004066,1,0,0,Bottleneck sequencing of human tissue.,6050,Bottleneck Sequencing of Human Tissue - (WGS),Homo_sapiens (1000Genomes_hs37d5),0,Bottleneck Sequencing Of Human Tissue (Wgs),18, +6,69725437,6050STDY14355645,,GCGGAGAC,CATTGCAC,,Duplex-Seq,GCGGAGAC,CATTGCAC,user1@my.com user2@my.com user3@my.com user4@my.com ,user1@my.com user1@my.com user4@my.com user4@my.com ,user2@my.com user2@my.com user3@my.com user3@my.com,user4@my.com user4@my.com,,0,0,70004578,0,69725437,,9606,S4360,,,standard,,,from:200 to:1500,,,Homo sapiens,0,,,PD37586k,9296981,0,6050STDY14355645,,Homo_sapiens (1000Genomes_hs37d5),USUII_FF3,888,EGAS00001004066,1,0,0,Bottleneck sequencing of human tissue.,6050,Bottleneck Sequencing of Human Tissue - (WGS),Homo_sapiens (1000Genomes_hs37d5),0,Bottleneck Sequencing Of Human Tissue (Wgs),19, +6,69725438,6050STDY14355646,,TTGGGTGA,ATAAAGCG,,Duplex-Seq,TTGGGTGA,ATAAAGCG,user1@my.com user2@my.com user3@my.com user4@my.com ,user1@my.com user1@my.com user4@my.com user4@my.com ,user2@my.com user2@my.com user3@my.com user3@my.com,user4@my.com user4@my.com,,0,0,70004578,0,69725438,,9606,S4360,,,standard,,,from:200 to:1500,,,Homo sapiens,0,,,PD37586k,9296982,0,6050STDY14355646,,Homo_sapiens (1000Genomes_hs37d5),USUII_FF3PE,888,EGAS00001004066,1,0,0,Bottleneck sequencing of human tissue.,6050,Bottleneck Sequencing of Human Tissue - (WGS),Homo_sapiens (1000Genomes_hs37d5),0,Bottleneck Sequencing Of Human Tissue (Wgs),20, +6,69725439,6050STDY14355647,,GTTCAAAG,TGCATAAA,,Duplex-Seq,GTTCAAAG,TGCATAAA,user1@my.com user2@my.com user3@my.com user4@my.com ,user1@my.com user1@my.com user4@my.com user4@my.com ,user2@my.com user2@my.com user3@my.com user3@my.com,user4@my.com user4@my.com,,0,0,70004578,0,69725439,,9606,S4360,,,standard,,,from:200 to:1500,,,Homo sapiens,0,,,PD37586k,9296983,0,6050STDY14355647,,Homo_sapiens (1000Genomes_hs37d5),USUII_FF17,888,EGAS00001004066,1,0,0,Bottleneck sequencing of human tissue.,6050,Bottleneck Sequencing of Human Tissue - (WGS),Homo_sapiens (1000Genomes_hs37d5),0,Bottleneck Sequencing Of Human Tissue (Wgs),21, +6,69725440,6050STDY14355648,,TTAACTTA,GTCATCCT,,Duplex-Seq,TTAACTTA,GTCATCCT,user1@my.com user2@my.com user3@my.com user4@my.com ,user1@my.com user1@my.com user4@my.com user4@my.com ,user2@my.com user2@my.com user3@my.com user3@my.com,user4@my.com user4@my.com,,0,0,70004578,0,69725440,,9606,S4360,,,standard,,,from:200 to:1500,,,Homo sapiens,0,,,PD37586k,9296984,0,6050STDY14355648,,Homo_sapiens (1000Genomes_hs37d5),USUII_FF17PE,888,EGAS00001004066,1,0,0,Bottleneck sequencing of human tissue.,6050,Bottleneck Sequencing of Human Tissue - (WGS),Homo_sapiens (1000Genomes_hs37d5),0,Bottleneck Sequencing Of Human Tissue (Wgs),22, +6,51702674,phiX_for_spiked_buffers,,TGTGCAGC,ACTGATGT,,,TGTGCAGC,ACTGATGT,,,,,,1,0,70004578,0,51702674,,10847,,,,standard,,,,,,,0,,,,1255141,,phiX_for_spiked_buffers,,PhiX (Sanger-SNPs),,888,,1,0,0,None,198,Illumina Controls, ,0,,888, +7,69510840,EGAN00001321692,,CCGCGGTT,AGCGCTAG,Twist_Human_Core_Exome_BI,Twist Pulldown,CCGCGGTT,AGCGCTAG,user6@my.com,user6@my.com,user7@my.com,,0,0,70004572,0,69510840,Homo sapiens,9606,S4215,,,standard,,,from:100 to:400,EGAN00001321692,DDD_cohort,Homo sapiens,0,,,DDD_MAIN5407888,1497836,,DDD_MAIN5407888,,,DDD_1_FR00569506,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,1, +7,69510852,EGAN00002042187,,TTATAACC,GATATCGA,Twist_Human_Core_Exome_BI,Twist Pulldown,TTATAACC,GATATCGA,user6@my.com,user6@my.com,user7@my.com,,0,0,70004572,0,69510852,Homo sapiens,9606,S4215,,,standard,,,from:100 to:400,EGAN00002042187,DDD_cohort,Homo sapiens,0,,,DDD_MAIN5710659,1823623,,DDD_MAIN5710659,,,DDD_1_FR00569278,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,2, +7,69510864,EGAN00001298465,,GGACTTGG,CGCAGACG,Twist_Human_Core_Exome_BI,Twist Pulldown,GGACTTGG,CGCAGACG,user6@my.com,user6@my.com,user7@my.com,,0,0,70004572,0,69510864,Homo sapiens,9606,S4215,,,standard,,,from:100 to:400,EGAN00001298465,DDD_cohort,Homo sapiens,0,,,DDD_MAIN5867091,2001421,,DDD_MAIN5867091,,,DDD_1_D500PK129595,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,3, +7,69510876,EGAN00001300772,,AAGTCCAA,TATGAGTA,Twist_Human_Core_Exome_BI,Twist Pulldown,AAGTCCAA,TATGAGTA,user6@my.com,user6@my.com,user7@my.com,,0,0,70004572,0,69510876,Homo sapiens,9606,S4215,,,standard,,,from:100 to:400,EGAN00001300772,DDD_cohort,Homo sapiens,0,,,DDD_MAIN5908944,2050909,,DDD_MAIN5908944,,,DDD_1_D500PK129441,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,4, +7,69510888,EGAN00001300773,,ATCCACTG,AGGTGCGT,Twist_Human_Core_Exome_BI,Twist Pulldown,ATCCACTG,AGGTGCGT,user6@my.com,user6@my.com,user7@my.com,,0,0,70004572,0,69510888,Homo sapiens,9606,S4215,,,standard,,,from:100 to:400,EGAN00001300773,DDD_cohort,Homo sapiens,0,,,DDD_MAIN5908952,2050917,,DDD_MAIN5908952,,,DDD_1_D500PK129440,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,5, +7,69510900,EGAN00001301174,,GCTTGTCA,GAACATAC,Twist_Human_Core_Exome_BI,Twist Pulldown,GCTTGTCA,GAACATAC,user6@my.com,user6@my.com,user7@my.com,,0,0,70004572,0,69510900,Homo sapiens,9606,S4215,,,standard,,,from:100 to:400,EGAN00001301174,DDD_cohort,Homo sapiens,0,,,DDD_MAIN5966748,2115694,,DDD_MAIN5966748,,,DDD_1_D500PK128034,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,6, +7,69510924,EGAN00001304327,,TGGATCGA,GTGCGATA,Twist_Human_Core_Exome_BI,Twist Pulldown,TGGATCGA,GTGCGATA,user6@my.com,user6@my.com,user7@my.com,,0,0,70004572,0,69510924,Homo sapiens,9606,S4215,,,standard,,,from:100 to:400,EGAN00001304327,DDD_cohort,Homo sapiens,0,,,DDD_MAIN6029045,2203893,,DDD_MAIN6029045,,,DDD_1_D0RG141038,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,7, +7,69510889,EGAN00001293788,,CCAAGTCT,AAGGATGA,Twist_Human_Core_Exome_BI,Twist Pulldown,CCAAGTCT,AAGGATGA,user6@my.com,user6@my.com,user7@my.com,,0,0,70004572,0,69510889,Homo sapiens,9606,S4215,,,standard,,,from:100 to:400,EGAN00001293788,DDD_cohort,Homo sapiens,0,,,DDD_MAIN5678531,1788223,,DDD_MAIN5678531,,,DDD_1_D575PK144581,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,8, +7,69510901,EGAN00001304217,,TTGGACTC,GGAAGCAG,Twist_Human_Core_Exome_BI,Twist Pulldown,TTGGACTC,GGAAGCAG,user6@my.com,user6@my.com,user7@my.com,,0,0,70004572,0,69510901,Homo sapiens,9606,S4215,,,standard,,,from:100 to:400,EGAN00001304217,DDD_cohort,Homo sapiens,0,,,DDD_MAIN6028474,2203237,,DDD_MAIN6028474,,,DDD_1_FR03967352,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,9, +7,69510913,EGAN00001293786,,GGCTTAAG,TCGTGACC,Twist_Human_Core_Exome_BI,Twist Pulldown,GGCTTAAG,TCGTGACC,user6@my.com,user6@my.com,user7@my.com,,0,0,70004572,0,69510913,Homo sapiens,9606,S4215,,,standard,,,from:100 to:400,EGAN00001293786,DDD_cohort,Homo sapiens,0,,,DDD_MAIN5670657,1779062,,DDD_MAIN5670657,,,DDD_1_D500PK132121,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,10, +7,69510925,EGAN00001293787,,AATCCGGA,CTACAGTT,Twist_Human_Core_Exome_BI,Twist Pulldown,AATCCGGA,CTACAGTT,user6@my.com,user6@my.com,user7@my.com,,0,0,70004572,0,69510925,Homo sapiens,9606,S4215,,,standard,,,from:100 to:400,EGAN00001293787,DDD_cohort,Homo sapiens,0,,,DDD_MAIN5670663,1779068,,DDD_MAIN5670663,,,DDD_1_D500PK132132,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,11, +7,69510842,EGAN00001321167,,TAATACAG,ATATTCAC,Twist_Human_Core_Exome_BI,Twist Pulldown,TAATACAG,ATATTCAC,user6@my.com,user6@my.com,user7@my.com,,0,0,70004572,0,69510842,Homo sapiens,9606,S4215,,,standard,,,from:100 to:400,EGAN00001321167,DDD_cohort,Homo sapiens,0,,,DDD_MAIN5426807,1517975,,DDD_MAIN5426807,,,DDD_1_FR00569436,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,12, +7,69510854,EGAN00002042190,,CGGCGTGA,GCGCCTGT,Twist_Human_Core_Exome_BI,Twist Pulldown,CGGCGTGA,GCGCCTGT,user6@my.com,user6@my.com,user7@my.com,,0,0,70004572,0,69510854,Homo sapiens,9606,S4215,,,standard,,,from:100 to:400,EGAN00002042190,DDD_cohort,Homo sapiens,0,,,DDD_MAIN5714029,1828207,,DDD_MAIN5714029,,,DDD_1_FR00559472,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,13, +7,69510866,EGAN00001298517,,ATGTAAGT,ACTCTATG,Twist_Human_Core_Exome_BI,Twist Pulldown,ATGTAAGT,ACTCTATG,user6@my.com,user6@my.com,user7@my.com,,0,0,70004572,0,69510866,Homo sapiens,9606,S4215,,,standard,,,from:100 to:400,EGAN00001298517,DDD_cohort,Homo sapiens,0,,,DDD_MAIN5908825,2050790,,DDD_MAIN5908825,,,DDD_1_D575NB050268,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,14, +7,69510878,EGAN00003580492,,GCACGGAC,GTCTCGCA,Twist_Human_Core_Exome_BI,Twist Pulldown,GCACGGAC,GTCTCGCA,user6@my.com,user6@my.com,user7@my.com,,0,0,70004572,0,69510878,,9606,S4215,,,standard,,,from:100 to:400,EGAN00003580492,,Homo Sapiens,0,,,6278STDY12901037,8350874,0,6278STDY12901037,,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),GM06_0086,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,15, +7,69510890,EGAN00003580498,,GGTACCTT,AAGACGTC,Twist_Human_Core_Exome_BI,Twist Pulldown,GGTACCTT,AAGACGTC,user6@my.com,user6@my.com,user7@my.com,,0,0,70004572,0,69510890,,9606,S4215,,,standard,,,from:100 to:400,EGAN00003580498,,Homo Sapiens,0,,,6278STDY12901046,8350881,0,6278STDY12901046,,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),GM06_0025,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,16, +7,69510902,EGAN00003580503,,AACGTTCC,GGAGTACT,Twist_Human_Core_Exome_BI,Twist Pulldown,AACGTTCC,GGAGTACT,user6@my.com,user6@my.com,user7@my.com,,0,0,70004572,0,69510902,,9606,S4215,,,standard,,,from:100 to:400,EGAN00003580503,,Homo Sapiens,0,,,6278STDY12901051,8350885,0,6278STDY12901051,,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),GM06_0529,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,17, +7,69510914,EGAN00003580513,,GCAGAATT,ACCGGCCA,Twist_Human_Core_Exome_BI,Twist Pulldown,GCAGAATT,ACCGGCCA,user6@my.com,user6@my.com,user7@my.com,,0,0,70004572,0,69510914,,9606,S4215,,,standard,,,from:100 to:400,EGAN00003580513,,Homo Sapiens,0,,,6278STDY12901061,8350893,0,6278STDY12901061,,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),GM05_5040,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,18, +7,69510926,EGAN00003580516,,ATGAGGCC,GTTAATTG,Twist_Human_Core_Exome_BI,Twist Pulldown,ATGAGGCC,GTTAATTG,user6@my.com,user6@my.com,user7@my.com,,0,0,70004572,0,69510926,,9606,S4215,,,standard,,,from:100 to:400,EGAN00003580516,,Homo Sapiens,0,,,6278STDY12901069,8350899,0,6278STDY12901069,,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),GM05_5014,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,19, +7,69510843,EGAN00003580522,,ACTAAGAT,AACCGCGG,Twist_Human_Core_Exome_BI,Twist Pulldown,ACTAAGAT,AACCGCGG,user6@my.com,user6@my.com,user7@my.com,,0,0,70004572,0,69510843,,9606,S4215,,,standard,,,from:100 to:400,EGAN00003580522,,Homo Sapiens,0,,,6278STDY12901078,8350904,0,6278STDY12901078,,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),GM05_5031,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,20, +7,69510855,EGAN00003580559,,GTCGGAGC,GGTTATAA,Twist_Human_Core_Exome_BI,Twist Pulldown,GTCGGAGC,GGTTATAA,user6@my.com,user6@my.com,user7@my.com,,0,0,70004572,0,69510855,,9606,S4215,,,standard,,,from:100 to:400,EGAN00003580559,,Homo Sapiens,0,,,6278STDY12901100,8350921,0,6278STDY12901100,,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),GM06_1550,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,21, +7,69510867,EGAN00003580560,,CTTGGTAT,CCAAGTCC,Twist_Human_Core_Exome_BI,Twist Pulldown,CTTGGTAT,CCAAGTCC,user6@my.com,user6@my.com,user7@my.com,,0,0,70004572,0,69510867,,9606,S4215,,,standard,,,from:100 to:400,EGAN00003580560,,Homo Sapiens,0,,,6278STDY12901101,8350922,0,6278STDY12901101,,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),GM05_5038,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,22, +7,69510879,EGAN00003581911,,TCCAACGC,TTGGACTT,Twist_Human_Core_Exome_BI,Twist Pulldown,TCCAACGC,TTGGACTT,user6@my.com,user6@my.com,user7@my.com,,0,0,70004572,0,69510879,,9606,S4215,,,standard,,,from:100 to:400,EGAN00003581911,,Homo Sapiens,0,,,6278STDY12902768,8352273,0,6278STDY12902768,,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),OG08_0346,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,23, +7,69510891,EGAN00003581913,,CCGTGAAG,CAGTGGAT,Twist_Human_Core_Exome_BI,Twist Pulldown,CCGTGAAG,CAGTGGAT,user6@my.com,user6@my.com,user7@my.com,,0,0,70004572,0,69510891,,9606,S4215,,,standard,,,from:100 to:400,EGAN00003581913,,Homo Sapiens,0,,,6278STDY12902770,8352275,0,6278STDY12902770,,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),OG08_0324,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,24, +7,69510903,EGAN00003581920,,TTACAGGA,TGACAAGC,Twist_Human_Core_Exome_BI,Twist Pulldown,TTACAGGA,TGACAAGC,user6@my.com,user6@my.com,user7@my.com,,0,0,70004572,0,69510903,,9606,S4215,,,standard,,,from:100 to:400,EGAN00003581920,,Homo Sapiens,0,,,6278STDY12902777,8352282,0,6278STDY12902777,,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),OG08_0335,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,25, +7,69510915,EGAN00003581923,,GGCATTCT,CTAGCTTG,Twist_Human_Core_Exome_BI,Twist Pulldown,GGCATTCT,CTAGCTTG,user6@my.com,user6@my.com,user7@my.com,,0,0,70004572,0,69510915,,9606,S4215,,,standard,,,from:100 to:400,EGAN00003581923,,Homo Sapiens,0,,,6278STDY12902780,8352285,0,6278STDY12902780,,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),OG08_0301,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,26, +7,69510844,EGAN00003581941,,TACCGAGG,CCTGAACT,Twist_Human_Core_Exome_BI,Twist Pulldown,TACCGAGG,CCTGAACT,user6@my.com,user6@my.com,user7@my.com,,0,0,70004572,0,69510844,,9606,S4215,,,standard,,,from:100 to:400,EGAN00003581941,,Homo Sapiens,0,,,6278STDY12902798,8352303,0,6278STDY12902798,,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),OG08_0398,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,27, +7,69510868,EGAN00003581945,,AGCCTCAT,AGTAGAGA,Twist_Human_Core_Exome_BI,Twist Pulldown,AGCCTCAT,AGTAGAGA,user6@my.com,user6@my.com,user7@my.com,,0,0,70004572,0,69510868,,9606,S4215,,,standard,,,from:100 to:400,EGAN00003581945,,Homo Sapiens,0,,,6278STDY12902802,8352307,0,6278STDY12902802,,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),OG08_0383,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,28, +7,69510880,EGAN00003581946,,GATTCTGC,GACGAGAG,Twist_Human_Core_Exome_BI,Twist Pulldown,GATTCTGC,GACGAGAG,user6@my.com,user6@my.com,user7@my.com,,0,0,70004572,0,69510880,,9606,S4215,,,standard,,,from:100 to:400,EGAN00003581946,,Homo Sapiens,0,,,6278STDY12902803,8352308,0,6278STDY12902803,,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),OG08_0372,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,29, +7,69510892,EGAN00003581951,,TCGTAGTG,AGACTTGG,Twist_Human_Core_Exome_BI,Twist Pulldown,TCGTAGTG,AGACTTGG,user6@my.com,user6@my.com,user7@my.com,,0,0,70004572,0,69510892,,9606,S4215,,,standard,,,from:100 to:400,EGAN00003581951,,Homo Sapiens,0,,,6278STDY12902808,8352313,0,6278STDY12902808,,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),OG08_0395,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,30, +7,69510904,EGAN00003581955,,CTACGACA,GAGTCCAA,Twist_Human_Core_Exome_BI,Twist Pulldown,CTACGACA,GAGTCCAA,user6@my.com,user6@my.com,user7@my.com,,0,0,70004572,0,69510904,,9606,S4215,,,standard,,,from:100 to:400,EGAN00003581955,,Homo Sapiens,0,,,6278STDY12902811,8352316,0,6278STDY12902811,,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),OG08_0362,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,31, +7,69510916,EGAN00003581958,,TAAGTGGT,CTTAAGCC,Twist_Human_Core_Exome_BI,Twist Pulldown,TAAGTGGT,CTTAAGCC,user6@my.com,user6@my.com,user7@my.com,,0,0,70004572,0,69510916,,9606,S4215,,,standard,,,from:100 to:400,EGAN00003581958,,Homo Sapiens,0,,,6278STDY12902815,8352320,0,6278STDY12902815,,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),OG08_0396,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,32, +7,69510928,EGAN00003581970,,CGGACAAC,TCCGGATT,Twist_Human_Core_Exome_BI,Twist Pulldown,CGGACAAC,TCCGGATT,user6@my.com,user6@my.com,user7@my.com,,0,0,70004572,0,69510928,,9606,S4215,,,standard,,,from:100 to:400,EGAN00003581970,,Homo Sapiens,0,,,6278STDY12902827,8352332,0,6278STDY12902827,,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),OG08_0332,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,33, +7,69510845,EGAN00003581974,,ATATGGAT,CTGTATTA,Twist_Human_Core_Exome_BI,Twist Pulldown,ATATGGAT,CTGTATTA,user6@my.com,user6@my.com,user7@my.com,,0,0,70004572,0,69510845,,9606,S4215,,,standard,,,from:100 to:400,EGAN00003581974,,Homo Sapiens,0,,,6278STDY12902831,8352336,0,6278STDY12902831,,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),OG08_0376,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,34, +7,69510857,EGAN00003581980,,GCGCAAGC,TCACGCCG,Twist_Human_Core_Exome_BI,Twist Pulldown,GCGCAAGC,TCACGCCG,user6@my.com,user6@my.com,user7@my.com,,0,0,70004572,0,69510857,,9606,S4215,,,standard,,,from:100 to:400,EGAN00003581980,,Homo Sapiens,0,,,6278STDY12902837,8352342,0,6278STDY12902837,,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),OG08_0379,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,35, +7,69510869,EGAN00003581983,,AAGATACT,ACTTACAT,Twist_Human_Core_Exome_BI,Twist Pulldown,AAGATACT,ACTTACAT,user6@my.com,user6@my.com,user7@my.com,,0,0,70004572,0,69510869,,9606,S4215,,,standard,,,from:100 to:400,EGAN00003581983,,Homo Sapiens,0,,,6278STDY12902840,8352345,0,6278STDY12902840,,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),OG08_0355,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,36, +7,69510881,EGAN00003581988,,GGAGCGTC,GTCCGTGC,Twist_Human_Core_Exome_BI,Twist Pulldown,GGAGCGTC,GTCCGTGC,user6@my.com,user6@my.com,user7@my.com,,0,0,70004572,0,69510881,,9606,S4215,,,standard,,,from:100 to:400,EGAN00003581988,,Homo Sapiens,0,,,6278STDY12902845,8352350,0,6278STDY12902845,,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),OG08_0361,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,37, +7,69510893,EGAN00003582081,,ATGGCATG,AAGGTACC,Twist_Human_Core_Exome_BI,Twist Pulldown,ATGGCATG,AAGGTACC,user6@my.com,user6@my.com,user7@my.com,,0,0,70004572,0,69510893,,9606,S4215,,,standard,,,from:100 to:400,EGAN00003582081,,Homo Sapiens,0,,,6278STDY12902847,8352352,0,6278STDY12902847,,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),OG08_0368,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,38, +7,51702674,phiX_for_spiked_buffers,,TGTGCAGC,ACTGATGT,,,TGTGCAGC,ACTGATGT,,,,,,1,0,70004572,0,51702674,,10847,,,,standard,,,,,,,0,,,,1255141,,phiX_for_spiked_buffers,,PhiX (Sanger-SNPs),,888,,1,0,0,None,198,Illumina Controls, ,0,,888, +8,69510840,EGAN00001321692,,CCGCGGTT,AGCGCTAG,Twist_Human_Core_Exome_BI,Twist Pulldown,CCGCGGTT,AGCGCTAG,user6@my.com,user6@my.com,user7@my.com,,0,0,70004571,0,69510840,Homo sapiens,9606,S4215,,,standard,,,from:100 to:400,EGAN00001321692,DDD_cohort,Homo sapiens,0,,,DDD_MAIN5407888,1497836,,DDD_MAIN5407888,,,DDD_1_FR00569506,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,1, +8,69510852,EGAN00002042187,,TTATAACC,GATATCGA,Twist_Human_Core_Exome_BI,Twist Pulldown,TTATAACC,GATATCGA,user6@my.com,user6@my.com,user7@my.com,,0,0,70004571,0,69510852,Homo sapiens,9606,S4215,,,standard,,,from:100 to:400,EGAN00002042187,DDD_cohort,Homo sapiens,0,,,DDD_MAIN5710659,1823623,,DDD_MAIN5710659,,,DDD_1_FR00569278,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,2, +8,69510864,EGAN00001298465,,GGACTTGG,CGCAGACG,Twist_Human_Core_Exome_BI,Twist Pulldown,GGACTTGG,CGCAGACG,user6@my.com,user6@my.com,user7@my.com,,0,0,70004571,0,69510864,Homo sapiens,9606,S4215,,,standard,,,from:100 to:400,EGAN00001298465,DDD_cohort,Homo sapiens,0,,,DDD_MAIN5867091,2001421,,DDD_MAIN5867091,,,DDD_1_D500PK129595,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,3, +8,69510876,EGAN00001300772,,AAGTCCAA,TATGAGTA,Twist_Human_Core_Exome_BI,Twist Pulldown,AAGTCCAA,TATGAGTA,user6@my.com,user6@my.com,user7@my.com,,0,0,70004571,0,69510876,Homo sapiens,9606,S4215,,,standard,,,from:100 to:400,EGAN00001300772,DDD_cohort,Homo sapiens,0,,,DDD_MAIN5908944,2050909,,DDD_MAIN5908944,,,DDD_1_D500PK129441,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,4, +8,69510888,EGAN00001300773,,ATCCACTG,AGGTGCGT,Twist_Human_Core_Exome_BI,Twist Pulldown,ATCCACTG,AGGTGCGT,user6@my.com,user6@my.com,user7@my.com,,0,0,70004571,0,69510888,Homo sapiens,9606,S4215,,,standard,,,from:100 to:400,EGAN00001300773,DDD_cohort,Homo sapiens,0,,,DDD_MAIN5908952,2050917,,DDD_MAIN5908952,,,DDD_1_D500PK129440,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,5, +8,69510900,EGAN00001301174,,GCTTGTCA,GAACATAC,Twist_Human_Core_Exome_BI,Twist Pulldown,GCTTGTCA,GAACATAC,user6@my.com,user6@my.com,user7@my.com,,0,0,70004571,0,69510900,Homo sapiens,9606,S4215,,,standard,,,from:100 to:400,EGAN00001301174,DDD_cohort,Homo sapiens,0,,,DDD_MAIN5966748,2115694,,DDD_MAIN5966748,,,DDD_1_D500PK128034,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,6, +8,69510924,EGAN00001304327,,TGGATCGA,GTGCGATA,Twist_Human_Core_Exome_BI,Twist Pulldown,TGGATCGA,GTGCGATA,user6@my.com,user6@my.com,user7@my.com,,0,0,70004571,0,69510924,Homo sapiens,9606,S4215,,,standard,,,from:100 to:400,EGAN00001304327,DDD_cohort,Homo sapiens,0,,,DDD_MAIN6029045,2203893,,DDD_MAIN6029045,,,DDD_1_D0RG141038,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,7, +8,69510889,EGAN00001293788,,CCAAGTCT,AAGGATGA,Twist_Human_Core_Exome_BI,Twist Pulldown,CCAAGTCT,AAGGATGA,user6@my.com,user6@my.com,user7@my.com,,0,0,70004571,0,69510889,Homo sapiens,9606,S4215,,,standard,,,from:100 to:400,EGAN00001293788,DDD_cohort,Homo sapiens,0,,,DDD_MAIN5678531,1788223,,DDD_MAIN5678531,,,DDD_1_D575PK144581,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,8, +8,69510901,EGAN00001304217,,TTGGACTC,GGAAGCAG,Twist_Human_Core_Exome_BI,Twist Pulldown,TTGGACTC,GGAAGCAG,user6@my.com,user6@my.com,user7@my.com,,0,0,70004571,0,69510901,Homo sapiens,9606,S4215,,,standard,,,from:100 to:400,EGAN00001304217,DDD_cohort,Homo sapiens,0,,,DDD_MAIN6028474,2203237,,DDD_MAIN6028474,,,DDD_1_FR03967352,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,9, +8,69510913,EGAN00001293786,,GGCTTAAG,TCGTGACC,Twist_Human_Core_Exome_BI,Twist Pulldown,GGCTTAAG,TCGTGACC,user6@my.com,user6@my.com,user7@my.com,,0,0,70004571,0,69510913,Homo sapiens,9606,S4215,,,standard,,,from:100 to:400,EGAN00001293786,DDD_cohort,Homo sapiens,0,,,DDD_MAIN5670657,1779062,,DDD_MAIN5670657,,,DDD_1_D500PK132121,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,10, +8,69510925,EGAN00001293787,,AATCCGGA,CTACAGTT,Twist_Human_Core_Exome_BI,Twist Pulldown,AATCCGGA,CTACAGTT,user6@my.com,user6@my.com,user7@my.com,,0,0,70004571,0,69510925,Homo sapiens,9606,S4215,,,standard,,,from:100 to:400,EGAN00001293787,DDD_cohort,Homo sapiens,0,,,DDD_MAIN5670663,1779068,,DDD_MAIN5670663,,,DDD_1_D500PK132132,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,11, +8,69510842,EGAN00001321167,,TAATACAG,ATATTCAC,Twist_Human_Core_Exome_BI,Twist Pulldown,TAATACAG,ATATTCAC,user6@my.com,user6@my.com,user7@my.com,,0,0,70004571,0,69510842,Homo sapiens,9606,S4215,,,standard,,,from:100 to:400,EGAN00001321167,DDD_cohort,Homo sapiens,0,,,DDD_MAIN5426807,1517975,,DDD_MAIN5426807,,,DDD_1_FR00569436,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,12, +8,69510854,EGAN00002042190,,CGGCGTGA,GCGCCTGT,Twist_Human_Core_Exome_BI,Twist Pulldown,CGGCGTGA,GCGCCTGT,user6@my.com,user6@my.com,user7@my.com,,0,0,70004571,0,69510854,Homo sapiens,9606,S4215,,,standard,,,from:100 to:400,EGAN00002042190,DDD_cohort,Homo sapiens,0,,,DDD_MAIN5714029,1828207,,DDD_MAIN5714029,,,DDD_1_FR00559472,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,13, +8,69510866,EGAN00001298517,,ATGTAAGT,ACTCTATG,Twist_Human_Core_Exome_BI,Twist Pulldown,ATGTAAGT,ACTCTATG,user6@my.com,user6@my.com,user7@my.com,,0,0,70004571,0,69510866,Homo sapiens,9606,S4215,,,standard,,,from:100 to:400,EGAN00001298517,DDD_cohort,Homo sapiens,0,,,DDD_MAIN5908825,2050790,,DDD_MAIN5908825,,,DDD_1_D575NB050268,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,14, +8,69510878,EGAN00003580492,,GCACGGAC,GTCTCGCA,Twist_Human_Core_Exome_BI,Twist Pulldown,GCACGGAC,GTCTCGCA,user6@my.com,user6@my.com,user7@my.com,,0,0,70004571,0,69510878,,9606,S4215,,,standard,,,from:100 to:400,EGAN00003580492,,Homo Sapiens,0,,,6278STDY12901037,8350874,0,6278STDY12901037,,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),GM06_0086,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,15, +8,69510890,EGAN00003580498,,GGTACCTT,AAGACGTC,Twist_Human_Core_Exome_BI,Twist Pulldown,GGTACCTT,AAGACGTC,user6@my.com,user6@my.com,user7@my.com,,0,0,70004571,0,69510890,,9606,S4215,,,standard,,,from:100 to:400,EGAN00003580498,,Homo Sapiens,0,,,6278STDY12901046,8350881,0,6278STDY12901046,,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),GM06_0025,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,16, +8,69510902,EGAN00003580503,,AACGTTCC,GGAGTACT,Twist_Human_Core_Exome_BI,Twist Pulldown,AACGTTCC,GGAGTACT,user6@my.com,user6@my.com,user7@my.com,,0,0,70004571,0,69510902,,9606,S4215,,,standard,,,from:100 to:400,EGAN00003580503,,Homo Sapiens,0,,,6278STDY12901051,8350885,0,6278STDY12901051,,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),GM06_0529,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,17, +8,69510914,EGAN00003580513,,GCAGAATT,ACCGGCCA,Twist_Human_Core_Exome_BI,Twist Pulldown,GCAGAATT,ACCGGCCA,user6@my.com,user6@my.com,user7@my.com,,0,0,70004571,0,69510914,,9606,S4215,,,standard,,,from:100 to:400,EGAN00003580513,,Homo Sapiens,0,,,6278STDY12901061,8350893,0,6278STDY12901061,,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),GM05_5040,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,18, +8,69510926,EGAN00003580516,,ATGAGGCC,GTTAATTG,Twist_Human_Core_Exome_BI,Twist Pulldown,ATGAGGCC,GTTAATTG,user6@my.com,user6@my.com,user7@my.com,,0,0,70004571,0,69510926,,9606,S4215,,,standard,,,from:100 to:400,EGAN00003580516,,Homo Sapiens,0,,,6278STDY12901069,8350899,0,6278STDY12901069,,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),GM05_5014,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,19, +8,69510843,EGAN00003580522,,ACTAAGAT,AACCGCGG,Twist_Human_Core_Exome_BI,Twist Pulldown,ACTAAGAT,AACCGCGG,user6@my.com,user6@my.com,user7@my.com,,0,0,70004571,0,69510843,,9606,S4215,,,standard,,,from:100 to:400,EGAN00003580522,,Homo Sapiens,0,,,6278STDY12901078,8350904,0,6278STDY12901078,,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),GM05_5031,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,20, +8,69510855,EGAN00003580559,,GTCGGAGC,GGTTATAA,Twist_Human_Core_Exome_BI,Twist Pulldown,GTCGGAGC,GGTTATAA,user6@my.com,user6@my.com,user7@my.com,,0,0,70004571,0,69510855,,9606,S4215,,,standard,,,from:100 to:400,EGAN00003580559,,Homo Sapiens,0,,,6278STDY12901100,8350921,0,6278STDY12901100,,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),GM06_1550,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,21, +8,69510867,EGAN00003580560,,CTTGGTAT,CCAAGTCC,Twist_Human_Core_Exome_BI,Twist Pulldown,CTTGGTAT,CCAAGTCC,user6@my.com,user6@my.com,user7@my.com,,0,0,70004571,0,69510867,,9606,S4215,,,standard,,,from:100 to:400,EGAN00003580560,,Homo Sapiens,0,,,6278STDY12901101,8350922,0,6278STDY12901101,,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),GM05_5038,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,22, +8,69510879,EGAN00003581911,,TCCAACGC,TTGGACTT,Twist_Human_Core_Exome_BI,Twist Pulldown,TCCAACGC,TTGGACTT,user6@my.com,user6@my.com,user7@my.com,,0,0,70004571,0,69510879,,9606,S4215,,,standard,,,from:100 to:400,EGAN00003581911,,Homo Sapiens,0,,,6278STDY12902768,8352273,0,6278STDY12902768,,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),OG08_0346,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,23, +8,69510891,EGAN00003581913,,CCGTGAAG,CAGTGGAT,Twist_Human_Core_Exome_BI,Twist Pulldown,CCGTGAAG,CAGTGGAT,user6@my.com,user6@my.com,user7@my.com,,0,0,70004571,0,69510891,,9606,S4215,,,standard,,,from:100 to:400,EGAN00003581913,,Homo Sapiens,0,,,6278STDY12902770,8352275,0,6278STDY12902770,,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),OG08_0324,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,24, +8,69510903,EGAN00003581920,,TTACAGGA,TGACAAGC,Twist_Human_Core_Exome_BI,Twist Pulldown,TTACAGGA,TGACAAGC,user6@my.com,user6@my.com,user7@my.com,,0,0,70004571,0,69510903,,9606,S4215,,,standard,,,from:100 to:400,EGAN00003581920,,Homo Sapiens,0,,,6278STDY12902777,8352282,0,6278STDY12902777,,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),OG08_0335,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,25, +8,69510915,EGAN00003581923,,GGCATTCT,CTAGCTTG,Twist_Human_Core_Exome_BI,Twist Pulldown,GGCATTCT,CTAGCTTG,user6@my.com,user6@my.com,user7@my.com,,0,0,70004571,0,69510915,,9606,S4215,,,standard,,,from:100 to:400,EGAN00003581923,,Homo Sapiens,0,,,6278STDY12902780,8352285,0,6278STDY12902780,,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),OG08_0301,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,26, +8,69510844,EGAN00003581941,,TACCGAGG,CCTGAACT,Twist_Human_Core_Exome_BI,Twist Pulldown,TACCGAGG,CCTGAACT,user6@my.com,user6@my.com,user7@my.com,,0,0,70004571,0,69510844,,9606,S4215,,,standard,,,from:100 to:400,EGAN00003581941,,Homo Sapiens,0,,,6278STDY12902798,8352303,0,6278STDY12902798,,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),OG08_0398,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,27, +8,69510868,EGAN00003581945,,AGCCTCAT,AGTAGAGA,Twist_Human_Core_Exome_BI,Twist Pulldown,AGCCTCAT,AGTAGAGA,user6@my.com,user6@my.com,user7@my.com,,0,0,70004571,0,69510868,,9606,S4215,,,standard,,,from:100 to:400,EGAN00003581945,,Homo Sapiens,0,,,6278STDY12902802,8352307,0,6278STDY12902802,,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),OG08_0383,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,28, +8,69510880,EGAN00003581946,,GATTCTGC,GACGAGAG,Twist_Human_Core_Exome_BI,Twist Pulldown,GATTCTGC,GACGAGAG,user6@my.com,user6@my.com,user7@my.com,,0,0,70004571,0,69510880,,9606,S4215,,,standard,,,from:100 to:400,EGAN00003581946,,Homo Sapiens,0,,,6278STDY12902803,8352308,0,6278STDY12902803,,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),OG08_0372,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,29, +8,69510892,EGAN00003581951,,TCGTAGTG,AGACTTGG,Twist_Human_Core_Exome_BI,Twist Pulldown,TCGTAGTG,AGACTTGG,user6@my.com,user6@my.com,user7@my.com,,0,0,70004571,0,69510892,,9606,S4215,,,standard,,,from:100 to:400,EGAN00003581951,,Homo Sapiens,0,,,6278STDY12902808,8352313,0,6278STDY12902808,,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),OG08_0395,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,30, +8,69510904,EGAN00003581955,,CTACGACA,GAGTCCAA,Twist_Human_Core_Exome_BI,Twist Pulldown,CTACGACA,GAGTCCAA,user6@my.com,user6@my.com,user7@my.com,,0,0,70004571,0,69510904,,9606,S4215,,,standard,,,from:100 to:400,EGAN00003581955,,Homo Sapiens,0,,,6278STDY12902811,8352316,0,6278STDY12902811,,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),OG08_0362,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,31, +8,69510916,EGAN00003581958,,TAAGTGGT,CTTAAGCC,Twist_Human_Core_Exome_BI,Twist Pulldown,TAAGTGGT,CTTAAGCC,user6@my.com,user6@my.com,user7@my.com,,0,0,70004571,0,69510916,,9606,S4215,,,standard,,,from:100 to:400,EGAN00003581958,,Homo Sapiens,0,,,6278STDY12902815,8352320,0,6278STDY12902815,,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),OG08_0396,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,32, +8,69510928,EGAN00003581970,,CGGACAAC,TCCGGATT,Twist_Human_Core_Exome_BI,Twist Pulldown,CGGACAAC,TCCGGATT,user6@my.com,user6@my.com,user7@my.com,,0,0,70004571,0,69510928,,9606,S4215,,,standard,,,from:100 to:400,EGAN00003581970,,Homo Sapiens,0,,,6278STDY12902827,8352332,0,6278STDY12902827,,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),OG08_0332,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,33, +8,69510845,EGAN00003581974,,ATATGGAT,CTGTATTA,Twist_Human_Core_Exome_BI,Twist Pulldown,ATATGGAT,CTGTATTA,user6@my.com,user6@my.com,user7@my.com,,0,0,70004571,0,69510845,,9606,S4215,,,standard,,,from:100 to:400,EGAN00003581974,,Homo Sapiens,0,,,6278STDY12902831,8352336,0,6278STDY12902831,,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),OG08_0376,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,34, +8,69510857,EGAN00003581980,,GCGCAAGC,TCACGCCG,Twist_Human_Core_Exome_BI,Twist Pulldown,GCGCAAGC,TCACGCCG,user6@my.com,user6@my.com,user7@my.com,,0,0,70004571,0,69510857,,9606,S4215,,,standard,,,from:100 to:400,EGAN00003581980,,Homo Sapiens,0,,,6278STDY12902837,8352342,0,6278STDY12902837,,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),OG08_0379,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,35, +8,69510869,EGAN00003581983,,AAGATACT,ACTTACAT,Twist_Human_Core_Exome_BI,Twist Pulldown,AAGATACT,ACTTACAT,user6@my.com,user6@my.com,user7@my.com,,0,0,70004571,0,69510869,,9606,S4215,,,standard,,,from:100 to:400,EGAN00003581983,,Homo Sapiens,0,,,6278STDY12902840,8352345,0,6278STDY12902840,,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),OG08_0355,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,36, +8,69510881,EGAN00003581988,,GGAGCGTC,GTCCGTGC,Twist_Human_Core_Exome_BI,Twist Pulldown,GGAGCGTC,GTCCGTGC,user6@my.com,user6@my.com,user7@my.com,,0,0,70004571,0,69510881,,9606,S4215,,,standard,,,from:100 to:400,EGAN00003581988,,Homo Sapiens,0,,,6278STDY12902845,8352350,0,6278STDY12902845,,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),OG08_0361,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,37, +8,69510893,EGAN00003582081,,ATGGCATG,AAGGTACC,Twist_Human_Core_Exome_BI,Twist Pulldown,ATGGCATG,AAGGTACC,user6@my.com,user6@my.com,user7@my.com,,0,0,70004571,0,69510893,,9606,S4215,,,standard,,,from:100 to:400,EGAN00003582081,,Homo Sapiens,0,,,6278STDY12902847,8352352,0,6278STDY12902847,,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),OG08_0368,888,EGAS00001005007,1,0,0,Whole exome sequencing of patients with Inflammatory Bowel Disease,6278,HG_WC10130_IBD Bioresource Whole Exome Sequencing of 20%2C000 samples,Homo_sapiens (GRCh38_full_analysis_set_plus_decoy_hla),1,IBD Whole Exome Sequencing ,38, +8,51702674,phiX_for_spiked_buffers,,TGTGCAGC,ACTGATGT,,,TGTGCAGC,ACTGATGT,,,,,,1,0,70004571,0,51702674,,10847,,,,standard,,,,,,,0,,,,1255141,,phiX_for_spiked_buffers,,PhiX (Sanger-SNPs),,888,,1,0,0,None,198,Illumina Controls, ,0,,888,