From eeb13a143cd734c93fe39508a5e136cdeb073d92 Mon Sep 17 00:00:00 2001 From: Marina Gourtovaia Date: Thu, 12 Oct 2023 21:52:21 +0100 Subject: [PATCH] Removed LIMS XML test fixtures --- MANIFEST | 506 -- t/data/npg_api/st/batches/1027.xml | 55 - t/data/npg_api/st/batches/13861.xml | 746 -- t/data/npg_api/st/batches/14601.xml | 607 -- t/data/npg_api/st/batches/1536.xml | 62 - t/data/npg_api/st/batches/16442.xml | 503 -- t/data/npg_api/st/batches/1826.xml | 62 - t/data/npg_api/st/batches/266.xml | 62 - t/data/npg_api/st/batches/3022.xml | 68 - t/data/npg_api/st/batches/3748.xml | 55 - t/data/npg_api/st/batches/4861.xml | 617 -- t/data/npg_api/st/batches/5298.xml | 63 - t/data/npg_api/st/batches/5305.xml | 62 - t/data/npg_api/st/samples/10014.xml | 210 - t/data/npg_api/st/samples/1240077.xml | 213 - t/data/npg_api/st/samples/1240078.xml | 213 - t/data/npg_api/st/samples/1240079.xml | 213 - t/data/npg_api/st/samples/1240080.xml | 213 - t/data/npg_api/st/samples/1240081.xml | 213 - 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GATCTCTT - 6 - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - 1 - ATCACGTTAT - 7 - - - - - - 2 - CGATGTTTAT - 7 - - - - - - 3 - TTAGGCATAT - 7 - - - - - - 4 - TGACCACTAT - 7 - - - - - - 5 - ACAGTGGTAT - 7 - - - - - - 6 - GCCAATGTAT - 7 - - - - - - 7 - CAGATCTGAT - 7 - - - - - - 8 - ACTTGATGAT - 7 - - - - - - 9 - GATCAGCGAT - 7 - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - diff --git a/t/data/npg_api/st/batches/14601.xml b/t/data/npg_api/st/batches/14601.xml deleted file mode 100644 index 00adaef2..00000000 --- a/t/data/npg_api/st/batches/14601.xml +++ /dev/null @@ -1,607 +0,0 @@ - - - 14601 - started - - - - - - 1 - ATCACG - 3 - - - - - - 2 - CGATGT - 3 - - - - - - 3 - TTAGGC - 3 - - - - - - 4 - TGACCA - 3 - - - - - - 5 - ACAGTG - 3 - - - - - - 7 - CAGATC - 3 - - - - - - 8 - ACTTGA - 3 - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - 1 - ATCACG - 3 - - - - - - 2 - CGATGT - 3 - - - - - - 3 - TTAGGC - 3 - - - - - - 4 - TGACCA - 3 - - - - - - 5 - ACAGTG - 3 - - - - - - 7 - CAGATC - 3 - - - - - - 8 - ACTTGA - 3 - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - 1 - ATCACG - 3 - - - - - - 2 - CGATGT - 3 - - - - - - 3 - TTAGGC - 3 - - - - - - 4 - TGACCA - 3 - - - - - - 5 - ACAGTG - 3 - - - - - - 6 - GCCAAT - 3 - - - - - - 7 - CAGATC - 3 - - - - - - 8 - ACTTGA - 3 - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - 1 - ATCACG - 3 - - - - - - 2 - CGATGT - 3 - - - - - - 3 - TTAGGC - 3 - - - - - - 4 - TGACCA - 3 - - - - - - 5 - ACAGTG - 3 - - - - - - 6 - GCCAAT - 3 - - - - - - 7 - CAGATC - 3 - - - - - - 8 - ACTTGA - 3 - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - 1 - ATCACG - 3 - - - - - - 2 - CGATGT - 3 - - - - - - 3 - TTAGGC - 3 - - - - - - 4 - TGACCA - 3 - - - - - - 5 - ACAGTG - 3 - - - - - - 6 - GCCAAT - 3 - - - - - - 7 - CAGATC - 3 - - - - - - 8 - ACTTGA - 3 - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - 1 - ATCACG - 3 - - - - - - 2 - CGATGT - 3 - - - - - - 3 - TTAGGC - 3 - - - - - - 4 - TGACCA - 3 - - - - - - 5 - ACAGTG - 3 - - - - - - 6 - GCCAAT - 3 - - - - - - 7 - CAGATC - 3 - - - - - - 8 - ACTTGA - 3 - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - 1 - ATCACG - 3 - - - - - - 2 - CGATGT - 3 - - - - - - 3 - TTAGGC - 3 - - - - - - 4 - TGACCA - 3 - - - - - - 5 - ACAGTG - 3 - - - - - - 6 - GCCAAT - 3 - - - - - - 7 - CAGATC - 3 - - - - - - 8 - ACTTGA - 3 - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - 1 - ATCACG - 3 - - - - - - 2 - CGATGT - 3 - - - - - - 3 - TTAGGC - 3 - - - - - - 4 - TGACCA - 3 - - - - - - 5 - ACAGTG - 3 - - - - - - 6 - GCCAAT - 3 - - - - - - 7 - CAGATC - 3 - - - - - - 8 - ACTTGA - 3 - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - diff --git a/t/data/npg_api/st/batches/1536.xml b/t/data/npg_api/st/batches/1536.xml deleted file mode 100644 index e21fbc4e..00000000 --- a/t/data/npg_api/st/batches/1536.xml +++ /dev/null @@ -1,62 +0,0 @@ - - - 1536 - released - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - diff --git a/t/data/npg_api/st/batches/16442.xml b/t/data/npg_api/st/batches/16442.xml deleted file mode 100644 index bd744826..00000000 --- a/t/data/npg_api/st/batches/16442.xml +++ /dev/null @@ -1,503 +0,0 @@ - - - 16442 - released - - - - - - 2 - CGATGT - 3 - - - Human all exon 50MB - - - - - - 3 - TTAGGC - 3 - - - Fox bait - - - - - - 4 - TGACCA - 3 - - - - - - 5 - ACAGTG - 3 - - - - - - - - - - 6 - GCCAAT - 3 - - - Human all exon 50MB - - - - - - - 7 - CAGATC - 3 - - - - Human all exon 50MB - - - - - - - 8 - ACTTGA - 3 - - - Human all exon 50MB - - - - - - - - - 168 - ACAACGCAAT - - 6 - - - - - - - - - - 5 - ACAGTG - 3 - - - Human all exon 50MB - - - - - - - 6 - GCCAAT - 3 - - - - Human all exon 50MB - - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - - 1 - ATCACG - - 3 - - - Human all exon 50MB - - - - - - - 2 - CGATGT - 3 - - - Human all exon 50MB - - - - - - - 7 - CAGATC - 3 - - - - Human all exon 50MB - - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - - 4 - TGACCA - - 3 - - - Human all exon 50MB - - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - - 5 - - ACAGTG - 3 - - - Human all exon 50MB - - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - - 6 - - GCCAAT - 3 - - - Mouse custom bait for Bronx Waltzer - - - - - - - 7 - CAGATC - 3 - - - - Mouse custom bait for Bronx Waltzer - - - - - - 8 - - ACTTGA - 3 - - - Mouse custom bait for Bronx Waltzer - - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - - 1 - - ATCACG - 3 - - - Mouse all exon - - - - - - - 2 - CGATGT - 3 - - - - Mouse all exon - - - - - - 3 - - TTAGGC - 3 - - - Mouse all exon - - - - - - - 4 - TGACCA - 3 - - - - Mouse all exon - - - - - - 5 - - ACAGTG - 3 - - - Mouse all exon - - - - - - - 6 - GCCAAT - 3 - - - - Mouse all exon - - - - - - 7 - - CAGATC - 3 - - - Mouse all exon - - - - - - - 8 - ACTTGA - 3 - - - - Mouse all exon - - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - - 1 - ATCACG - 3 - - - - Mouse all exon - - - - - - - 2 - CGATGT - 3 - - - Mouse all exon - - - - - - - 3 - TTAGGC - 3 - - - - Mouse all exon - - - - - - - 4 - TGACCA - 3 - - - Mouse all exon - - - - - - - 5 - ACAGTG - 3 - - - - Mouse some exon - - - - - - - 6 - GCCAAT - 3 - - - Mouse all exon - - - - - - - - - 168 - ACAACGCAAT - - 6 - - - - - - - diff --git a/t/data/npg_api/st/batches/1826.xml b/t/data/npg_api/st/batches/1826.xml deleted file mode 100644 index 1b2d7a8f..00000000 --- a/t/data/npg_api/st/batches/1826.xml +++ /dev/null @@ -1,62 +0,0 @@ - - - 1826 - released - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - diff --git a/t/data/npg_api/st/batches/266.xml b/t/data/npg_api/st/batches/266.xml deleted file mode 100644 index 617746d3..00000000 --- a/t/data/npg_api/st/batches/266.xml +++ /dev/null @@ -1,62 +0,0 @@ - - - 266 - released - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - diff --git a/t/data/npg_api/st/batches/3022.xml b/t/data/npg_api/st/batches/3022.xml deleted file mode 100644 index c57d0da9..00000000 --- a/t/data/npg_api/st/batches/3022.xml +++ /dev/null @@ -1,68 +0,0 @@ - - - 3022 - released - - - - - - Mouse all exon - - - - - - - - - - - - - - - - - - - - - - - - Mouse all exon - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - diff --git a/t/data/npg_api/st/batches/3748.xml b/t/data/npg_api/st/batches/3748.xml deleted file mode 100644 index 258c7e24..00000000 --- a/t/data/npg_api/st/batches/3748.xml +++ /dev/null @@ -1,55 +0,0 @@ - - - 3748 - started - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - diff --git a/t/data/npg_api/st/batches/4861.xml b/t/data/npg_api/st/batches/4861.xml deleted file mode 100644 index 8fdd3968..00000000 --- a/t/data/npg_api/st/batches/4861.xml +++ /dev/null @@ -1,617 +0,0 @@ - - - 4861 - released - - - - - - 1 - ATCACG - 3 - - - - - - 2 - CGATGT - 3 - - - - - - 3 - TTAGGC - 3 - - - - - - 4 - TGACCA - 3 - - - - - - 5 - ACAGTG - 3 - - - - - - 6 - GCCAAT - 3 - - - - - - 7 - CAGATC - 3 - - - - - - 8 - ACTTGA - 3 - - - - - - 9 - GATCAG - 3 - - - - - - 10 - TAGCTT - 3 - - - - - - 11 - GGCTAC - 3 - - - - - - - - - - 1 - ATCACG - 3 - - - - - - 2 - CGATGT - 3 - - - - - - 3 - TTAGGC - 3 - - - - - - 4 - TGACCA - 3 - - - - - - 5 - ACAGTG - 3 - - - - - - 6 - GCCAAT - 3 - - - - - - 7 - CAGATC - 3 - - - - - - 8 - ACTTGA - 3 - - - - - - 9 - GATCAG - 3 - - - - - - 10 - TAGCTT - 3 - - - - - - 11 - GGCTAC - 3 - - - - - - - - - - 1 - ATCACG - 3 - - - - - - 2 - CGATGT - 3 - - - - - - 3 - TTAGGC - 3 - - - - - - 4 - TGACCA - 3 - - - - - - 5 - ACAGTG - 3 - - - - - - 6 - GCCAAT - 3 - - - - - - 7 - CAGATC - 3 - - - - - - 8 - ACTTGA - 3 - - - - - - 9 - GATCAG - 3 - - - - - - 10 - TAGCTT - 3 - - - - - - 11 - GGCTAC - 3 - - - - - - - - - - - - - - - - 1 - ATCACG - 3 - - - - - - 2 - CGATGT - 3 - - - - - - 3 - TTAGGC - 3 - - - - - - 5 - ACAGTG - 3 - - - - - - 6 - GCCAAT - 3 - - - - - - 7 - CAGATC - 3 - - - - - - 8 - ACTTGA - 3 - - - - - - 9 - GATCAG - 3 - - - - - - 10 - TAGCTT - 3 - - - - - - - - - - 1 - - 1 - - - - - - 2 - - 1 - - - - - - 3 - - 1 - - - - - - 4 - - 1 - - - - - - 5 - - 1 - - - - - - 6 - - 1 - - - - - - - - - - 1 - ATCACG - 3 - - - - - - 2 - CGATGT - 3 - - - - - - 3 - TTAGGC - 3 - - - - - - 4 - TGACCA - 3 - - - - - - 5 - ACAGTG - 3 - - - - - - 6 - GCCAAT - 3 - - - - - - 7 - CAGATC - 3 - - - - - - 8 - ACTTGA - 3 - - - - - - 9 - GATCAG - 3 - - - - - - 10 - TAGCTT - 3 - - - - - - 11 - GGCTAC - 3 - - - - - - 12 - CTTGTA - 3 - - - - - - - - - - 1 - ATCACG - 3 - - - - - - 2 - CGATGT - 3 - - - - - - 3 - TTAGGC - 3 - - - - - - 4 - TGACCA - 3 - - - - - - 5 - ACAGTG - 3 - - - - - - 6 - GCCAAT - 3 - - - - - - 7 - CAGATC - 3 - - - - - - 8 - ACTTGA - 3 - - - - - - 9 - GATCAG - 3 - - - - - - 10 - TAGCTT - 3 - - - - - - 11 - GGCTAC - 3 - - - - - - 12 - CTTGTA - 3 - - - - - - - diff --git a/t/data/npg_api/st/batches/5298.xml b/t/data/npg_api/st/batches/5298.xml deleted file mode 100644 index 95a6c4a3..00000000 --- a/t/data/npg_api/st/batches/5298.xml +++ /dev/null @@ -1,63 +0,0 @@ - - - 5298 - released - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - diff --git a/t/data/npg_api/st/batches/5305.xml b/t/data/npg_api/st/batches/5305.xml deleted file mode 100644 index 20b20ab7..00000000 --- a/t/data/npg_api/st/batches/5305.xml +++ /dev/null @@ -1,62 +0,0 @@ - - - 5305 - released - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - diff --git a/t/data/npg_api/st/samples/10014.xml b/t/data/npg_api/st/samples/10014.xml deleted file mode 100644 index e9942b41..00000000 --- a/t/data/npg_api/st/samples/10014.xml +++ /dev/null @@ -1,210 +0,0 @@ - - - 10014 - 104A_Sc_YPS128 - 390 - - - Phenotype - - - - Sample purified - - - - TAXON ID - 4932 - - - Country of origin - - - - Treatment - - - - Time Point - - - - Date of sample extraction - - - - Sample Description - - - - ENA Sample Accession Number - ERS016989 - - - Common Name - Saccharomyces cervisiae - - - Gender - - - - Mother - - - - Ethnicity - - - - Compound - - - - Cell Type - - - - Age - - - - Genotype - - - - Volume (µl) - - - - Dose - - - - Organism Part - - - - Growth Condition - - - - Concentration - - - - Public Name - 104A_Sc_YPS128 - - - Subject - - - - RNAi - - - - Concentration determind by - - - - Is re-submitted? - - - - DNA source - - - - Sample extraction method - - - - Disease - - - - Sibling - - - - Strain - - - - Cohort - - - - Immunoprecipitate - - - - Disease State - - - - Sample storage conditions - - - - Sample type - - - - Date of sample collection - - - - Developmental Stage - - - - Purification method - - - - Sample Visibility - Public - - - GC content - Neutral - - - Father - - - - Plate - - - - Geographical region - - - - Replicate - - - - Organism - S. cerevisiae - - - Reference Genome - - - - - - - - - - - - - 390 - diff --git a/t/data/npg_api/st/samples/1240077.xml b/t/data/npg_api/st/samples/1240077.xml deleted file mode 100644 index 6aef889e..00000000 --- a/t/data/npg_api/st/samples/1240077.xml +++ /dev/null @@ -1,213 +0,0 @@ - - - 1240077 - PA0186-C - 578 - false - - - Disease - - - - RNAi - - - - Phenotype - - - - Date of sample collection - - - - Is re-submitted? - - - - TAXON ID - 5833 - - - Sample type - - - - Sample purified - - - - ENA Sample Accession Number - ERS042050 - - - Strain - - - - GC content - High AT - - - Genotype - - - - Date of sample extraction - - - - Sibling - - - - Mother - - - - Geographical region - - - - Immunoprecipitate - - - - Cell Type - - - - Replicate - - - - Cohort - - - - Age - - - - Sample Description - - - - Common Name - Plasmodium falciparum - - - Treatment - - - - Time Point - - - - Growth Condition - - - - Compound - - - - Sample storage conditions - - - - Sample extraction method - - - - Subject - - - - Organism Part - - - - Father - - - - Country of origin - - - - Concentration - - - - DNA source - Genomic - - - Dose - - - - Disease State - - - - Concentration determind by - - - - Purification method - - - - Sample Visibility - Hold - - - Public Name - 9790 - - - Gender - - - - Volume (µl) - - - - Developmental Stage - - - - Plate - - - - Ethnicity - - - - Organism - malaria parasite P. falciparum - - - Reference Genome - - - - - - - - - - - - - - - 578 - diff --git a/t/data/npg_api/st/samples/1240078.xml b/t/data/npg_api/st/samples/1240078.xml deleted file mode 100644 index 1cbb4f41..00000000 --- a/t/data/npg_api/st/samples/1240078.xml +++ /dev/null @@ -1,213 +0,0 @@ - - - 1240078 - PA0196-C - 578 - false - - - Organism - malaria parasite P. falciparum - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - High AT - - - Gender - - - - DNA source - Genomic - - - Public Name - 9800 - - - Common Name - Plasmodium falciparum - - - Strain - - - - TAXON ID - 5833 - - - ENA Sample Accession Number - ERS042051 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - - - 578 - diff --git a/t/data/npg_api/st/samples/1240079.xml b/t/data/npg_api/st/samples/1240079.xml deleted file mode 100644 index fbeb450e..00000000 --- a/t/data/npg_api/st/samples/1240079.xml +++ /dev/null @@ -1,213 +0,0 @@ - - - 1240079 - PA0269-C - 578 - false - - - Organism - malaria parasite P. falciparum - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - High AT - - - Gender - - - - DNA source - Genomic - - - Public Name - 9873 - - - Common Name - Plasmodium falciparum - - - Strain - - - - TAXON ID - 5833 - - - ENA Sample Accession Number - ERS042052 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - - - 578 - diff --git a/t/data/npg_api/st/samples/1240080.xml b/t/data/npg_api/st/samples/1240080.xml deleted file mode 100644 index 050c5439..00000000 --- a/t/data/npg_api/st/samples/1240080.xml +++ /dev/null @@ -1,213 +0,0 @@ - - - 1240080 - PA0271-C - 578 - false - - - Organism - malaria parasite P. falciparum - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - High AT - - - Gender - - - - DNA source - Genomic - - - Public Name - 9875 - - - Common Name - Plasmodium falciparum - - - Strain - - - - TAXON ID - 5833 - - - ENA Sample Accession Number - ERS042053 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - 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file mode 100644 index f5a700bc..00000000 --- a/t/data/npg_api/st/samples/5058.xml +++ /dev/null @@ -1,208 +0,0 @@ - - - 5058 - DE1191 - 297 - false - - - Organism - Shigella sonnei - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - - - - DNA source - - - - Public Name - DE1191 - - - Common Name - Shigella sonnei - - - Strain - DE1191 - - - TAXON ID - 624 - - - ENA Sample Accession Number - ERS008113 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - 297 - diff --git a/t/data/npg_api/st/samples/5059.xml b/t/data/npg_api/st/samples/5059.xml deleted file mode 100644 index a8210116..00000000 --- a/t/data/npg_api/st/samples/5059.xml +++ /dev/null @@ -1,208 +0,0 @@ - - - 5059 - DE1336 - 297 - false - - - Organism - Shigella sonnei - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - - - - DNA source - - - - Public Name - DE1336 - - - Common Name - Shigella sonnei - - - Strain - DE1336 - - - TAXON ID - 624 - - - ENA Sample Accession Number - ERS008114 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - 297 - diff --git a/t/data/npg_api/st/samples/5060.xml b/t/data/npg_api/st/samples/5060.xml deleted file mode 100644 index ed263c2a..00000000 --- a/t/data/npg_api/st/samples/5060.xml +++ /dev/null @@ -1,208 +0,0 @@ - - - 5060 - EG467 - 297 - false - - - Organism - Shigella sonnei - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - - - - DNA source - - - - Public Name - EG467 - - - Common Name - Shigella sonnei - - - Strain - EG467 - - - TAXON ID - 624 - - - ENA Sample Accession Number - ERS008115 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - 297 - diff --git a/t/data/npg_api/st/samples/5061.xml b/t/data/npg_api/st/samples/5061.xml deleted file mode 100644 index 0c37bccb..00000000 --- a/t/data/npg_api/st/samples/5061.xml +++ /dev/null @@ -1,208 +0,0 @@ - - - 5061 - EG304 - 297 - false - - - Organism - Shigella sonnei - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - - - - DNA source - - - - Public Name - EG304 - - - Common Name - Shigella sonnei - - - Strain - EG304 - - - TAXON ID - 624 - - - ENA Sample Accession Number - ERS008116 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - 297 - diff --git a/t/data/npg_api/st/samples/5062.xml b/t/data/npg_api/st/samples/5062.xml deleted file mode 100644 index 12457bb2..00000000 --- a/t/data/npg_api/st/samples/5062.xml +++ /dev/null @@ -1,208 +0,0 @@ - - - 5062 - EG472 - 297 - false - - - Organism - Shigella sonnei - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - - - - DNA source - - - - Public Name - EG472 - - - Common Name - Shigella sonnei - - - Strain - EG472 - - - TAXON ID - 624 - - - ENA Sample Accession Number - ERS008117 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - 297 - diff --git a/t/data/npg_api/st/samples/5063.xml b/t/data/npg_api/st/samples/5063.xml deleted file mode 100644 index 2194e437..00000000 --- a/t/data/npg_api/st/samples/5063.xml +++ /dev/null @@ -1,208 +0,0 @@ - - - 5063 - EG365 - 297 - false - - - Organism - Shigella sonnei - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - - - - DNA source - - - - Public Name - EG365 - - - Common Name - Shigella sonnei - - - Strain - EG365 - - - TAXON ID - 624 - - - ENA Sample Accession Number - ERS008118 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - 297 - diff --git a/t/data/npg_api/st/studies/297.xml b/t/data/npg_api/st/studies/297.xml deleted file mode 100644 index 34ccaa7b..00000000 --- a/t/data/npg_api/st/studies/297.xml +++ /dev/null @@ -1,193 +0,0 @@ - - - 297 - Discovery of sequence diversity in Shigella sp. - true - 206 - - - tfelt - tfelt@sanger.ac.uk - Theresa Feltwell - 112 - - - deh - deh@sanger.ac.uk - David Harris - 138 - - - tc7 - tc7@sanger.ac.uk - Thomas Connor - 475 - - - - - deh - deh@sanger.ac.uk - David Harris - 138 - - - jm15 - jm15@sanger.ac.uk - Jacqueline McQuillan - 67 - - - nds - nds@sanger.ac.uk - Nishadi De Silva - 383 - - - - - tfelt - tfelt@sanger.ac.uk - Theresa Feltwell - 112 - - - - - 2009-04-27 11:46:48 +0100 - 2010-09-09 14:27:54 +0100 - - - Has this been approved? - - - - Delay for - - - - Study description - For further information on this study please see http://www.sanger.ac.uk/resources/downloads/bacteria/shigella-sonnei.html This data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria), please see http://www.sanger.ac.uk/datasharing/ - - - ENA Study Accession Number - ERP000182 - - - Title - Discovery of sequence diversity in Shigella sp. - - - SNP study ID - - - - Abstract - For further information on this study please see http://www.sanger.ac.uk/resources/downloads/bacteria/shigella-sonnei.html - - - Study name abbreviation - - - - Do any of the samples in this study contain human DNA? - No - - - Study Visibility - Hold - - - Has the delay period been approved by the data sharing committee for this project? - - - - ArrayExpress Accession Number - - - - How is the data release to be timed? - standard - - - SNP parent study ID - - - - EGA DAC Accession Number - - - - Please explain the reason for delaying release (e.g., pre-existing collaborative agreement) - - - - What is the data release strategy for this study? - open - - - EGA Policy Accession Number - - - - Does this study contain samples that are contaminated with human DNA which must be removed prior to analysis? - No - - - Reason for delaying release - - - - Policy - - - - ENA Project ID - - - - Comment regarding prevention of data release and approval - - - - Are all the samples to be used in this study commercially available, unlinked anonymised cell-lines? - No - - - Number of gigabases per sample (minimum 0.15) - - - - What is the reason for preventing data release? - - - - Comment regarding data release timing and approval - - - - Alignments in BAM - true - - - Will you be using WTSI's standard access agreement? - - - - Faculty Sponsor - Julian Parkhill - - - What sort of study is this? - genomic sequencing - - - Reference Genome - - - - Study Type - Whole Genome Sequencing - - - diff --git a/t/data/npg_api/st/studies/546.xml b/t/data/npg_api/st/studies/546.xml deleted file mode 100644 index d2b04efe..00000000 --- a/t/data/npg_api/st/studies/546.xml +++ /dev/null @@ -1,199 +0,0 @@ - - - 546 - Plasmodium falciparum Illumina sequencing R&D 1 - true - 29 - - - vrr - vrr@sanger.ac.uk - Valentin Ruano Rubio - 282 - - - glm - glm@sanger.ac.uk - Gareth Maslen - 34 - - - sc11 - sc11@sanger.ac.uk - Susana Campino - 114 - - - so1 - so1@sanger.ac.uk - Samuel Oyola - 419 - - - - - mjs - mjs@sanger.ac.uk - Mandy Sanders - 29 - - - da2 - da2@sanger.ac.uk - Daniel Alcock - 335 - - - ekh - ekh@sanger.ac.uk - Eleanor Howard - 128 - - - - - mjs - mjs@sanger.ac.uk - Mandy Sanders - 29 - - - - - 2010-04-25 14:45:24 +0100 - 2010-04-26 12:09:41 +0100 - - - Has this been approved? - - - - Delay for - - - - Study description - To develop and improve methods for Illumina sequencing of Plasmodium faliciparum clinical samples. This data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria), please see http://www.sanger.ac.uk/datasharing/ - - - ENA Study Accession Number - ERP000197 - - - Title - Plasmodium falciparum Illumina sequencing R&D - - - SNP study ID - - - - Abstract - Development and optimization of pre-sequencing sample preparation methods with the goal of improving data yield and quality while reducing costs of sequencing per sample - - - Study name abbreviation - - - - Do any of the samples in this study contain human DNA? - Yes - - - Study Visibility - Hold - - - Has the delay period been approved by the data sharing committee for this project? - - - - ArrayExpress Accession Number - - - - How is the data release to be timed? - standard - - - SNP parent study ID - - - - EGA DAC Accession Number - - - - Please explain the reason for delaying release (e.g., pre-existing collaborative agreement) - - - - What is the data release strategy for this study? - open - - - EGA Policy Accession Number - - - - Does this study contain samples that are contaminated with human DNA which must be removed prior to analysis? - Yes - - - Reason for delaying release - - - - Policy - - - - ENA Project ID - 0 - - - Comment regarding prevention of data release and approval - - - - Are all the samples to be used in this study commercially available, unlinked anonymised cell-lines? - No - - - Number of gigabases per sample (minimum 0.15) - - - - What is the reason for preventing data release? - - - - Comment regarding data release timing and approval - - - - Alignments in BAM - true - - - Will you be using WTSI's standard access agreement? - - - - Faculty Sponsor - Dominic Kwiatkowski - - - What sort of study is this? - genomic sequencing - - - Reference Genome - - - - Study Type - Whole Genome Sequencing - - - diff --git a/t/data/npg_api/st/studies/578.xml b/t/data/npg_api/st/studies/578.xml deleted file mode 100644 index 30462a1e..00000000 --- a/t/data/npg_api/st/studies/578.xml +++ /dev/null @@ -1,205 +0,0 @@ - - - 578 - Plasmodium falciparum genome variation 1 - true - 29 - - - sc11 - sc11@sanger.ac.uk - Susana Campino - 114 - - - vrr - vrr@sanger.ac.uk - Valentin Ruano Rubio - 282 - - - glm - glm@sanger.ac.uk - Gareth Maslen - 34 - - - mm6 - mm6@sanger.ac.uk - Magnus Manske - 99 - - - ekh - ekh@sanger.ac.uk - Eleanor Howard - 128 - - - - - mjs - mjs@sanger.ac.uk - Mandy Sanders - 29 - - - da2 - da2@sanger.ac.uk - Daniel Alcock - 335 - - - ekh - ekh@sanger.ac.uk - Eleanor Howard - 128 - - - - - mjs - mjs@sanger.ac.uk - Mandy Sanders - 29 - - - - - 2010-05-17 15:28:19 +0100 - 2010-05-24 16:39:52 +0100 - - - Has this been approved? - - - - Delay for - - - - Study description - Genome sequencing of field samples of Plasmodium falciparum. This data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria), please see http://www.sanger.ac.uk/datasharing/ - - - ENA Study Accession Number - ERP000190 - - - Title - Plasmodium falciparum natural genome variation - - - SNP study ID - - - - Abstract - Direct or cultured field isolates of Plasmodium falciparum are being sequenced to provide contributing investigators with genetic data to support locally-driven studies, while also contributing to the development of a repository of natural P. falciparum genome variation. This global dataset will provide a resource for genome-wide association studies and other genomic studies aimed at identifying genetic loci responsible for such phenotypes as antimalarial drug resistance. For information on the Plasmodium genome variation project, contributing investigators and studies, sample details, and data sharing policies please visit http://www.malariagen.net/projects/parasite - - - Study name abbreviation - - - - Do any of the samples in this study contain human DNA? - Yes - - - Study Visibility - Hold - - - Has the delay period been approved by the data sharing committee for this project? - - - - ArrayExpress Accession Number - - - - How is the data release to be timed? - standard - - - SNP parent study ID - - - - EGA DAC Accession Number - - - - Please explain the reason for delaying release (e.g., pre-existing collaborative agreement) - - - - What is the data release strategy for this study? - open - - - EGA Policy Accession Number - - - - Does this study contain samples that are contaminated with human DNA which must be removed prior to analysis? - Yes - - - Reason for delaying release - - - - Policy - - - - ENA Project ID - 0 - - - Comment regarding prevention of data release and approval - 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- - - - - - - - - - 2072 - diff --git a/t/data/repos1/st/samples/1382839.xml b/t/data/repos1/st/samples/1382839.xml deleted file mode 100644 index 48ce38bd..00000000 --- a/t/data/repos1/st/samples/1382839.xml +++ /dev/null @@ -1,212 +0,0 @@ - - - 1382839 - HALO_GV1 - 1980 - false - - - Organism - - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - - - - Donor Id - - - - DNA source - Genomic - - - Public Name - - - - Common Name - - - - Strain - - - - TAXON ID - - - - ENA Sample Accession Number - - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - 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Homo sapiens - - - Strain - - - - TAXON ID - 9606 - - - ENA Sample Accession Number - EGAN00001188802 - - - Sample Description - Total RNA from iPS-derived macrophages using mirVana - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - N/A - - - Phenotype - Normal - - - Age - N/A - - - Developmental Stage - N/A - - - Cell Type - iPS-derived macrophage - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - N/A - - - RNAi - - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - control - - - Subject - - - - Disease - N/A - - - Reference Genome - Mus_musculus (GRCm38 + ensembl_75_transcriptome) - - - - - - - - - - 2899 - diff --git a/t/data/repos1/st/samples/1830658.xml b/t/data/repos1/st/samples/1830658.xml deleted file mode 100644 index 5278bc22..00000000 --- a/t/data/repos1/st/samples/1830658.xml +++ /dev/null @@ -1,213 +0,0 @@ - - - 1830658 - FSPS_10c_ctrl - 2910 - false - - - Organism - Human - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - Donor Id - FSPS_10c_ctrl - - - DNA source - Genomic - - - Public Name - FSPS 10c ctrl - - - Common Name - Homo sapiens - - - Strain - - - - TAXON ID - 9606 - - - ENA Sample Accession Number - EGAN00001188802 - - - Sample Description - Total RNA from iPS-derived macrophages using mirVana - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - 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Danielle Walker - 86 - - - - - 2011-12-19 13:19:12 +0000 - 2012-11-26 14:20:21 +0000 - - - Study description - These samples include exome sequences of family members with dyslipidemias from Finnish origin. - - - Does this study contain samples that are contaminated with human DNA which must be removed prior to analysis? - No - - - Does this study require the removal of X chromosome and autosome sequence? - No - - - ENA Project ID - - - - Abstract - These samples include exome sequences of family members with dyslipidemias from Finnish origin. - - - Title - Dyslipidemia - - - ENA Study Accession Number - EGAS00001000189 - - - Study Visibility - Hold - - - Do any of the samples in this study contain human DNA? - Yes - - - Are all the samples to be used in this study commercially available, unlinked anonymised cell-lines? - No - - - Study name abbreviation - SC_DYSLIPFAM - - - What is the data release strategy for this study? - managed - - - Will you be using WTSI's standard access agreement? - Yes - - - How is the data release to be timed? - standard - - - Reason for delaying release - - - - Delay for - - - - Alignments in BAM - true - - - Please explain the reason for delaying release (e.g., pre-existing collaborative agreement) - - - - Comment regarding data release timing and approval - - - - Policy - The data will be submitted to EGA and are accessible under managed data access. -https://www.sanger.ac.uk/datasharing/ - - - - EGA DAC Accession Number - - - - EGA Policy Accession Number - - - - ArrayExpress Accession Number - - - - Has the delay period been approved by the data sharing committee for this project? - - - - What is the reason for preventing data release? - - - - Has this been approved? - - - - Comment regarding prevention of data release and approval - - - - SNP study ID - - - - SNP parent study ID - - - - Number of gigabases per sample (minimum 0.15) - 7.0 - - - HMDMC approval number - - - - Study Type - Exome Sequencing - - - What sort of study is this? - genomic sequencing - - - Reference Genome - Homo_sapiens (1000Genomes_hs37d5) - - - Faculty Sponsor - Aarno Palotie - - - diff --git a/t/data/repos1/st/studies/2910.xml b/t/data/repos1/st/studies/2910.xml deleted file mode 100644 index f807dbc4..00000000 --- a/t/data/repos1/st/studies/2910.xml +++ /dev/null @@ -1,196 +0,0 @@ - - - 2910 - I1548 - miRNA expression in response to LPS stimulus in macrophages - true - 191 - - - ncb - ncb@sanger.ac.uk - Nathalie C Smerdon - 191 - - - jb4 - jb4@sanger.ac.uk - Jacqueline Brown - 351 - - - - - dg13 - dg13@sanger.ac.uk - Daniel Gaffney - 545 - - - - - 2014-01-14 10:49:48 +0000 - 2014-02-12 09:04:05 +0000 - - - Study description - Our lab is currently using macrophages as a model system for understanding how genetic -variation modulates the response to external environmental stimulus. We want to extend this -beyond regular polyadenylated RNA to small RNAs such as miRNAs. This project would -cover the costs of a pilot to study miRNA response to LPS stimulus, and will be performed as -part of a rotation project in the lab. We will require a small number of miRNA libraries and a -single lane of MiSeq - - - Does this study contain samples that are contaminated with human DNA which must be removed prior to analysis? - No - - - Does this study require the removal of X chromosome and autosome sequence? - No - - - Does this study require y chromosome data to be separated from x and autosomal data before archival? - false - - - ENA Project ID - - - - Abstract - Our lab is currently using macrophages as a model system for understanding how genetic -variation modulates the response to external environmental stimulus. We want to extend this -beyond regular polyadenylated RNA to small RNAs such as miRNAs. This project would -cover the costs of a pilot to study miRNA response to LPS stimulus, and will be performed as -part of a rotation project in the lab. We will require a small number of miRNA libraries and a single lane of MiSeq - - - Title - miRNA expression in response to LPS stimulus in macrophages - - - ENA Study Accession Number - EGAS00001000691 - - - Study Visibility - Hold - - - Do any of the samples in this study contain human DNA? - Yes - - - Are all the samples to be used in this study commercially available, unlinked anonymised cell-lines? - No - - - Study name abbreviation - macrophage_miRNA - - - What is the data release strategy for this study? - managed - - - Will you be using WTSI's standard access agreement? - Yes - - - How is the data release to be timed? - standard - - - Reason for delaying release - - - - Delay for - - - - Alignments in BAM - true - - - Please explain the reason for delaying release - - - - Comment regarding data release timing and approval - - - - Policy Url - http://www.sanger.ac.uk/datasharing/ - - - Policy title - Wellcome Trust Sanger Institute Data Sharing Policy - - - EGA DAC Accession Number - 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Reverse run ID - 276 - - - forward_yield - Forward yield - 197148495 - - - reverse_yield - Reverse yield - 185309346 - - - lane - Lane - 8 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 5527 - - - forward_run_id - Forward run ID - 321 - - - reverse_run_id - Reverse run ID - 346 - - - forward_yield - Forward yield - 175206083 - - - reverse_yield - Reverse yield - 162038835 - - - lane - Lane - 1 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 5528 - - - forward_run_id - Forward run ID - 321 - - - reverse_run_id - Reverse run ID - 346 - - - forward_yield - Forward yield - 191105425 - - - reverse_yield - Reverse yield - 169088613 - - - lane - Lane - 2 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 5529 - - - forward_run_id - Forward run ID - 321 - - - reverse_run_id - Reverse run ID - 346 - - - forward_yield - Forward yield - 190257931 - - - reverse_yield - Reverse yield - 162851942 - - - lane - Lane - 3 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 5530 - - - forward_run_id - Forward run ID - 321 - - - reverse_run_id - Reverse run ID - 346 - - - forward_yield - Forward yield - 188006995 - - - reverse_yield - Reverse yield - 157726099 - - - lane - Lane - 5 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 5531 - - - forward_run_id - Forward run ID - 240 - - - reverse_run_id - Reverse run ID - 253 - - - forward_yield - Forward yield - 197907760 - - - reverse_yield - Reverse yield - 191562981 - - - lane - Lane - 1 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 5532 - - - forward_run_id - Forward run ID - 240 - - - reverse_run_id - Reverse run ID - 253 - - - forward_yield - Forward yield - 212026413 - - - reverse_yield - Reverse yield - 206066984 - - - lane - Lane - 2 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 5533 - - - forward_run_id - Forward run ID - 240 - - - reverse_run_id - Reverse run ID - 253 - - - forward_yield - Forward yield - 214966437 - - - reverse_yield - Reverse yield - 204553348 - - - lane - Lane - 3 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 5534 - - - forward_run_id - Forward run ID - 240 - - - reverse_run_id - Reverse run ID - 253 - - - forward_yield - Forward yield - 210281684 - - - reverse_yield - Reverse yield - 202996551 - - - lane - Lane - 5 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 5535 - - - forward_run_id - Forward run ID - 240 - - - reverse_run_id - Reverse run ID - 253 - - - forward_yield - Forward yield - 210941855 - - - reverse_yield - Reverse yield - 203894004 - - - lane - Lane - 6 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 5536 - - - forward_run_id - Forward run ID - 323 - - - reverse_run_id - Reverse run ID - 341 - - - forward_yield - Forward yield - 217111233 - - - reverse_yield - Reverse yield - 202381996 - - - lane - Lane - 1 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 5537 - - - forward_run_id - Forward run ID - 240 - - - reverse_run_id - Reverse run ID - 253 - - - forward_yield - Forward yield - 204962236 - - - reverse_yield - Reverse yield - 195357280 - - - lane - Lane - 7 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 5538 - - - forward_run_id - Forward run ID - 323 - - - reverse_run_id - Reverse run ID - 341 - - - forward_yield - Forward yield - 224955806 - - - reverse_yield - Reverse yield - 210515233 - - - lane - Lane - 2 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 5539 - - - forward_run_id - Forward run ID - 240 - - - reverse_run_id - Reverse run ID - 253 - - - forward_yield - Forward yield - 204078303 - - - reverse_yield - Reverse yield - 194013295 - - - lane - Lane - 8 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 5540 - - - forward_run_id - Forward run ID - 323 - - - reverse_run_id - Reverse run ID - 341 - - - forward_yield - Forward yield - 226665926 - - - reverse_yield - Reverse yield - 212089575 - - - lane - Lane - 3 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 5541 - - - forward_run_id - Forward run ID - 323 - - - reverse_run_id - Reverse run ID - 341 - - - forward_yield - Forward yield - 222688280 - - - reverse_yield - Reverse yield - 208585107 - - - lane - Lane - 6 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 5542 - - - forward_run_id - Forward run ID - 323 - - - reverse_run_id - Reverse run ID - 341 - - - forward_yield - Forward yield - 222055904 - - - reverse_yield - Reverse yield - 207875649 - - - lane - Lane - 7 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 5543 - - - forward_run_id - Forward run ID - 309 - - - forward_run_id - Forward run ID - 323 - - - reverse_run_id - Reverse run ID - 341 - - - forward_yield - Forward yield - 209443991 - - - reverse_yield - Reverse yield - 195733029 - - - lane - Lane - 8 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 5544 - - - forward_run_id - Forward run ID - 309 - - - forward_run_id - Forward run ID - 278 - - - reverse_run_id - Reverse run ID - 309 - - - forward_yield - Forward yield - 201681352 - - - reverse_yield - Reverse yield - 190916588 - - - lane - Lane - 5 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 5545 - - - forward_run_id - Forward run ID - 278 - - - reverse_run_id - Reverse run ID - 309 - - - forward_yield - Forward yield - 179612323 - - - reverse_yield - Reverse yield - 170783934 - - - lane - Lane - 1 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 5546 - - - forward_run_id - Forward run ID - 278 - - - reverse_run_id - Reverse run ID - 309 - - - forward_yield - Forward yield - 184633707 - - - reverse_yield - Reverse yield - 175460309 - - - lane - Lane - 2 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 5547 - - - forward_run_id - Forward run ID - 278 - - - reverse_run_id - Reverse run ID - 309 - - - forward_yield - Forward yield - 184734945 - - - reverse_yield - Reverse yield - 175362068 - - - lane - Lane - 3 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10890 - - - forward_run_id - Forward run ID - 278 - - - reverse_run_id - Reverse run ID - 309 - - - forward_yield - Forward yield - 193627713 - - - reverse_yield - Reverse yield - 183981689 - - - lane - Lane - 6 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10891 - - - forward_run_id - Forward run ID - 278 - - - reverse_run_id - Reverse run ID - 309 - - - forward_yield - Forward yield - 191407361 - - - reverse_yield - Reverse yield - 182029999 - - - lane - Lane - 7 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10892 - - - forward_run_id - Forward run ID - 278 - - - reverse_run_id - Reverse run ID - 309 - - - forward_yield - Forward yield - 177519831 - - - reverse_yield - Reverse yield - 168979441 - - - lane - Lane - 8 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10893 - - - forward_run_id - Forward run ID - 246 - - - reverse_run_id - Reverse run ID - 260 - - - forward_yield - Forward yield - 123349316 - - - reverse_yield - Reverse yield - 114808066 - - - lane - Lane - 1 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10894 - - - forward_run_id - Forward run ID - 246 - - - reverse_run_id - Reverse run ID - 260 - - - forward_yield - Forward yield - 114880602 - - - reverse_yield - Reverse yield - 107994629 - - - lane - Lane - 2 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10895 - - - forward_run_id - Forward run ID - 279 - - - reverse_run_id - Reverse run ID - 311 - - - forward_yield - Forward yield - 147290030 - - - reverse_yield - Reverse yield - 140875973 - - - lane - Lane - 1 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10896 - - - forward_run_id - Forward run ID - 246 - - - reverse_run_id - Reverse run ID - 260 - - - forward_yield - Forward yield - 122020422 - - - reverse_yield - Reverse yield - 114514685 - - - lane - Lane - 3 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10897 - - - forward_run_id - Forward run ID - 246 - - - reverse_run_id - Reverse run ID - 260 - - - forward_yield - Forward yield - 124735077 - - - reverse_yield - Reverse yield - 118335235 - - - lane - Lane - 5 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10898 - - - forward_run_id - Forward run ID - 311 - - - forward_run_id - Forward run ID - 246 - - - reverse_run_id - Reverse run ID - 260 - - - forward_yield - Forward yield - 126665986 - - - reverse_yield - Reverse yield - 120664661 - - - lane - Lane - 6 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10899 - - - forward_run_id - Forward run ID - 246 - - - reverse_run_id - Reverse run ID - 260 - - - forward_yield - Forward yield - 125761308 - - - reverse_yield - Reverse yield - 119767621 - - - lane - Lane - 7 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10900 - - - forward_run_id - Forward run ID - 246 - - - reverse_run_id - Reverse run ID - 260 - - - forward_yield - Forward yield - 122400218 - - - reverse_yield - Reverse yield - 116335452 - - - lane - Lane - 8 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10901 - - - forward_run_id - Forward run ID - 248 - - - reverse_run_id - Reverse run ID - 256 - - - forward_yield - Forward yield - 210456484 - - - reverse_yield - Reverse yield - 182095987 - - - lane - Lane - 1 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10902 - - - forward_run_id - Forward run ID - 248 - - - reverse_run_id - Reverse run ID - 256 - - - forward_yield - Forward yield - 216061433 - - - reverse_yield - Reverse yield - 185684628 - - - lane - Lane - 2 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10903 - - - forward_run_id - Forward run ID - 279 - - - reverse_run_id - Reverse run ID - 311 - - - forward_yield - Forward yield - 144454331 - - - reverse_yield - Reverse yield - 139639087 - - - lane - Lane - 2 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10904 - - - forward_run_id - Forward run ID - 279 - - - reverse_run_id - Reverse run ID - 311 - - - forward_yield - Forward yield - 143387352 - - - reverse_yield - Reverse yield - 139181328 - - - lane - Lane - 3 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10905 - - - forward_run_id - Forward run ID - 248 - - - reverse_run_id - Reverse run ID - 256 - - - forward_yield - Forward yield - 215723783 - - - reverse_yield - Reverse yield - 183045456 - - - lane - Lane - 3 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10906 - - - forward_run_id - Forward run ID - 279 - - - reverse_run_id - Reverse run ID - 311 - - - forward_yield - Forward yield - 144569333 - - - reverse_yield - Reverse yield - 140215493 - - - lane - Lane - 5 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10907 - - - forward_run_id - Forward run ID - 248 - - - reverse_run_id - Reverse run ID - 256 - - - forward_yield - Forward yield - 220153095 - - - reverse_yield - Reverse yield - 185869282 - - - lane - Lane - 5 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10908 - - - forward_run_id - Forward run ID - 279 - - - reverse_run_id - Reverse run ID - 311 - - - forward_yield - Forward yield - 144198016 - - - reverse_yield - Reverse yield - 139859064 - - - lane - Lane - 6 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10909 - - - forward_run_id - Forward run ID - 279 - - - reverse_run_id - Reverse run ID - 311 - - - forward_yield - Forward yield - 142097605 - - - reverse_yield - Reverse yield - 137454293 - - - lane - Lane - 7 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10910 - - - forward_run_id - Forward run ID - 248 - - - reverse_run_id - Reverse run ID - 256 - - - forward_yield - Forward yield - 218039906 - - - reverse_yield - Reverse yield - 184746182 - - - lane - Lane - 6 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10911 - - - forward_run_id - Forward run ID - 279 - - - reverse_run_id - Reverse run ID - 311 - - - forward_yield - Forward yield - 142786451 - - - reverse_yield - Reverse yield - 138957871 - - - lane - Lane - 8 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10912 - - - forward_run_id - Forward run ID - 248 - - - reverse_run_id - Reverse run ID - 256 - - - forward_yield - Forward yield - 214892800 - - - reverse_yield - Reverse yield - 180279553 - - - lane - Lane - 7 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10913 - - - forward_run_id - Forward run ID - 248 - - - reverse_run_id - Reverse run ID - 256 - - - forward_yield - Forward yield - 203402408 - - - reverse_yield - Reverse yield - 171143400 - - - lane - Lane - 8 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10914 - - - forward_run_id - Forward run ID - 249 - - - reverse_run_id - Reverse run ID - 262 - - - forward_yield - Forward yield - 162432757 - - - reverse_yield - Reverse yield - 147761097 - - - lane - Lane - 1 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10915 - - - forward_run_id - Forward run ID - 249 - - - reverse_run_id - Reverse run ID - 262 - - - forward_yield - Forward yield - 162142678 - - - reverse_yield - Reverse yield - 147394140 - - - lane - Lane - 2 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10916 - - - forward_run_id - Forward run ID - 249 - - - reverse_run_id - Reverse run ID - 262 - - - forward_yield - Forward yield - 161179968 - - - reverse_yield - Reverse yield - 139052817 - - - lane - Lane - 3 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10917 - - - forward_run_id - Forward run ID - 249 - - - reverse_run_id - Reverse run ID - 262 - - - forward_yield - Forward yield - 167499380 - - - reverse_yield - Reverse yield - 150653529 - - - lane - Lane - 5 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10918 - - - forward_run_id - Forward run ID - 249 - - - reverse_run_id - Reverse run ID - 262 - - - forward_yield - Forward yield - 185121043 - - - reverse_yield - Reverse yield - 168935944 - - - lane - Lane - 6 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10919 - - - forward_run_id - Forward run ID - 249 - - - reverse_run_id - Reverse run ID - 262 - - - forward_yield - Forward yield - 181066827 - - - reverse_yield - Reverse yield - 166300189 - - - lane - Lane - 7 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10920 - - - forward_run_id - Forward run ID - 249 - - - reverse_run_id - Reverse run ID - 262 - - - forward_yield - Forward yield - 178967927 - - - reverse_yield - Reverse yield - 164141061 - - - lane - Lane - 8 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10921 - - - forward_run_id - Forward run ID - 289 - - - reverse_run_id - Reverse run ID - 301 - - - forward_yield - Forward yield - 196924961 - - - reverse_yield - Reverse yield - 175090133 - - - lane - Lane - 1 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10922 - - - forward_run_id - Forward run ID - 289 - - - reverse_run_id - Reverse run ID - 301 - - - forward_yield - Forward yield - 210201860 - - - reverse_yield - Reverse yield - 190233274 - - - lane - Lane - 2 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10923 - - - forward_run_id - Forward run ID - 289 - - - reverse_run_id - Reverse run ID - 301 - - - forward_yield - Forward yield - 195791394 - - - reverse_yield - Reverse yield - 178472701 - - - lane - Lane - 3 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10924 - - - forward_run_id - Forward run ID - 289 - - - reverse_run_id - Reverse run ID - 301 - - - forward_yield - Forward yield - 200798194 - - - reverse_yield - Reverse yield - 183179044 - - - lane - Lane - 5 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10925 - - - forward_run_id - Forward run ID - 289 - - - reverse_run_id - Reverse run ID - 301 - - - forward_yield - Forward yield - 221620601 - - - reverse_yield - Reverse yield - 201849310 - - - lane - Lane - 6 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10926 - - - forward_run_id - Forward run ID - 289 - - - reverse_run_id - Reverse run ID - 301 - - - forward_yield - Forward yield - 222855809 - - - reverse_yield - Reverse yield - 203815959 - - - lane - Lane - 7 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10927 - - - forward_run_id - Forward run ID - 289 - - - reverse_run_id - Reverse run ID - 301 - - - forward_yield - Forward yield - 214699757 - - - reverse_yield - Reverse yield - 194903459 - - - lane - Lane - 8 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10928 - - - forward_run_id - Forward run ID - 291 - - - reverse_run_id - Reverse run ID - 302 - - - forward_yield - Forward yield - 188579613 - - - reverse_yield - Reverse yield - 174585196 - - - lane - Lane - 1 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10929 - - - forward_run_id - Forward run ID - 291 - - - reverse_run_id - Reverse run ID - 302 - - - forward_yield - Forward yield - 194194643 - - - reverse_yield - Reverse yield - 179279018 - - - lane - Lane - 2 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10930 - - - forward_run_id - Forward run ID - 291 - - - reverse_run_id - Reverse run ID - 302 - - - forward_yield - Forward yield - 202547928 - - - reverse_yield - Reverse yield - 188668335 - - - lane - Lane - 3 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10931 - - - forward_run_id - Forward run ID - 291 - - - reverse_run_id - Reverse run ID - 302 - - - forward_yield - Forward yield - 200565320 - - - reverse_yield - Reverse yield - 186750399 - - - lane - Lane - 5 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10932 - - - forward_run_id - Forward run ID - 291 - - - reverse_run_id - Reverse run ID - 302 - - - forward_yield - Forward yield - 200660983 - - - reverse_yield - Reverse yield - 187135108 - - - lane - Lane - 6 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10933 - - - forward_run_id - Forward run ID - 291 - - - reverse_run_id - Reverse run ID - 302 - - - forward_yield - Forward yield - 198368315 - - - reverse_yield - Reverse yield - 184941776 - - - lane - Lane - 7 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10934 - - - forward_run_id - Forward run ID - 291 - - - reverse_run_id - Reverse run ID - 302 - - - forward_yield - Forward yield - 194512413 - - - reverse_yield - Reverse yield - 181125700 - - - lane - Lane - 8 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10935 - - - forward_run_id - Forward run ID - 296 - - - reverse_run_id - Reverse run ID - 320 - - - forward_yield - Forward yield - 188875195 - - - reverse_yield - Reverse yield - 177780885 - - - lane - Lane - 1 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10936 - - - forward_run_id - Forward run ID - 296 - - - reverse_run_id - Reverse run ID - 320 - - - forward_yield - Forward yield - 199179336 - - - reverse_yield - Reverse yield - 187209445 - - - lane - Lane - 2 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10937 - - - forward_run_id - Forward run ID - 296 - - - reverse_run_id - Reverse run ID - 320 - - - forward_yield - Forward yield - 196157214 - - - reverse_yield - Reverse yield - 184337080 - - - lane - Lane - 3 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10938 - - - forward_run_id - Forward run ID - 296 - - - reverse_run_id - Reverse run ID - 320 - - - forward_yield - Forward yield - 202412587 - - - reverse_yield - Reverse yield - 190864871 - - - lane - Lane - 5 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10939 - - - forward_run_id - Forward run ID - 296 - - - reverse_run_id - Reverse run ID - 320 - - - forward_yield - Forward yield - 200097885 - - - reverse_yield - Reverse yield - 189135903 - - - lane - Lane - 6 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10940 - - - forward_run_id - Forward run ID - 296 - - - reverse_run_id - Reverse run ID - 320 - - - forward_yield - Forward yield - 197156968 - - - reverse_yield - Reverse yield - 186376349 - - - lane - Lane - 7 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10941 - - - forward_run_id - Forward run ID - 296 - - - reverse_run_id - Reverse run ID - 320 - - - forward_yield - Forward yield - 195400948 - - - reverse_yield - Reverse yield - 184789233 - - - lane - Lane - 8 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10942 - - - forward_run_id - Forward run ID - 138 - - - reverse_run_id - Reverse run ID - 142 - - - forward_yield - Forward yield - 80911246 - - - reverse_yield - Reverse yield - 58541946 - - - lane - Lane - 1 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10943 - - - forward_run_id - Forward run ID - 138 - - - reverse_run_id - Reverse run ID - 142 - - - forward_yield - Forward yield - 87977907 - - - reverse_yield - Reverse yield - 64769806 - - - lane - Lane - 2 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10944 - - - forward_run_id - Forward run ID - 138 - - - reverse_run_id - Reverse run ID - 142 - - - forward_yield - Forward yield - 91150582 - - - reverse_yield - Reverse yield - 67735991 - - - lane - Lane - 3 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10945 - - - forward_run_id - Forward run ID - 138 - - - reverse_run_id - Reverse run ID - 142 - - - forward_yield - Forward yield - 90522341 - - - reverse_yield - Reverse yield - 67055748 - - - lane - Lane - 5 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10946 - - - forward_run_id - Forward run ID - 138 - - - reverse_run_id - Reverse run ID - 142 - - - forward_yield - Forward yield - 87406545 - - - reverse_yield - Reverse yield - 65123260 - - - lane - Lane - 6 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10947 - - - forward_run_id - Forward run ID - 138 - - - reverse_run_id - Reverse run ID - 142 - - - forward_yield - Forward yield - 79072569 - - - reverse_yield - Reverse yield - 58454282 - - - lane - Lane - 7 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10948 - - - forward_run_id - Forward run ID - 138 - - - reverse_run_id - Reverse run ID - 142 - - - forward_yield - Forward yield - 71057839 - - - reverse_yield - Reverse yield - 51946650 - - - lane - Lane - 8 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10949 - - - forward_run_id - Forward run ID - 141 - - - reverse_run_id - Reverse run ID - 152 - - - forward_yield - Forward yield - 182889214 - - - reverse_yield - Reverse yield - 151079677 - - - lane - Lane - 1 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10950 - - - forward_run_id - Forward run ID - 141 - - - reverse_run_id - Reverse run ID - 152 - - - forward_yield - Forward yield - 196675240 - - - reverse_yield - Reverse yield - 163677170 - - - lane - Lane - 2 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10951 - - - forward_run_id - Forward run ID - 141 - - - reverse_run_id - Reverse run ID - 152 - - - forward_yield - Forward yield - 196371980 - - - reverse_yield - Reverse yield - 165294758 - - - lane - Lane - 3 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10952 - - - forward_run_id - Forward run ID - 141 - - - reverse_run_id - Reverse run ID - 152 - - - forward_yield - Forward yield - 193845896 - - - reverse_yield - Reverse yield - 164972888 - - - lane - Lane - 5 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10953 - - - forward_run_id - Forward run ID - 141 - - - reverse_run_id - Reverse run ID - 152 - - - forward_yield - Forward yield - 196740691 - - - reverse_yield - Reverse yield - 166163749 - - - lane - Lane - 6 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10954 - - - forward_run_id - Forward run ID - 141 - - - reverse_run_id - Reverse run ID - 152 - - - forward_yield - Forward yield - 189915345 - - - reverse_yield - Reverse yield - 159329598 - - - lane - Lane - 7 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10955 - - - forward_run_id - Forward run ID - 141 - - - reverse_run_id - Reverse run ID - 152 - - - forward_yield - Forward yield - 185626801 - - - reverse_yield - Reverse yield - 155898377 - - - lane - Lane - 8 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10956 - - - forward_run_id - Forward run ID - 144 - - - reverse_run_id - Reverse run ID - 153 - - - forward_yield - Forward yield - 67713374 - - - reverse_yield - Reverse yield - 26838532 - - - lane - Lane - 1 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10957 - - - forward_run_id - Forward run ID - 144 - - - reverse_run_id - Reverse run ID - 153 - - - forward_yield - Forward yield - 91295107 - - - reverse_yield - Reverse yield - 53126471 - - - lane - Lane - 2 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10958 - - - forward_run_id - Forward run ID - 144 - - - reverse_run_id - Reverse run ID - 153 - - - forward_yield - Forward yield - 77713603 - - - reverse_yield - Reverse yield - 42421336 - - - lane - Lane - 3 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10959 - - - forward_run_id - Forward run ID - 144 - - - reverse_run_id - Reverse run ID - 153 - - - forward_yield - Forward yield - 109281067 - - - reverse_yield - Reverse yield - 59430423 - - - lane - Lane - 5 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10960 - - - forward_run_id - Forward run ID - 144 - - - reverse_run_id - Reverse run ID - 153 - - - forward_yield - Forward yield - 104787862 - - - reverse_yield - Reverse yield - 52457465 - - - lane - Lane - 6 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10961 - - - forward_run_id - Forward run ID - 144 - - - reverse_run_id - Reverse run ID - 153 - - - forward_yield - Forward yield - 114686150 - - - reverse_yield - Reverse yield - 66466573 - - - lane - Lane - 7 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10962 - - - forward_run_id - Forward run ID - 144 - - - reverse_run_id - Reverse run ID - 153 - - - forward_yield - Forward yield - 112000705 - - - reverse_yield - Reverse yield - 65140631 - - - lane - Lane - 8 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10963 - - - forward_run_id - Forward run ID - 145 - - - reverse_run_id - Reverse run ID - 154 - - - forward_yield - Forward yield - 124898976 - - - reverse_yield - Reverse yield - 91244598 - - - lane - Lane - 1 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10964 - - - forward_run_id - Forward run ID - 145 - - - reverse_run_id - Reverse run ID - 154 - - - forward_yield - Forward yield - 120392892 - - - reverse_yield - Reverse yield - 85917143 - - - lane - Lane - 2 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10965 - - - forward_run_id - Forward run ID - 145 - - - reverse_run_id - Reverse run ID - 154 - - - forward_yield - Forward yield - 111179550 - - - reverse_yield - Reverse yield - 77112075 - - - lane - Lane - 3 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10966 - - - forward_run_id - Forward run ID - 145 - - - reverse_run_id - Reverse run ID - 154 - - - forward_yield - Forward yield - 129223920 - - - reverse_yield - Reverse yield - 94359324 - - - lane - Lane - 5 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10967 - - - forward_run_id - Forward run ID - 145 - - - reverse_run_id - Reverse run ID - 154 - - - forward_yield - Forward yield - 126715456 - - - reverse_yield - Reverse yield - 94266468 - - - lane - Lane - 6 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10968 - - - forward_run_id - Forward run ID - 145 - - - reverse_run_id - Reverse run ID - 154 - - - forward_yield - Forward yield - 129031786 - - - reverse_yield - Reverse yield - 94515369 - - - lane - Lane - 7 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10969 - - - forward_run_id - Forward run ID - 145 - - - reverse_run_id - Reverse run ID - 154 - - - forward_yield - Forward yield - 118521562 - - - reverse_yield - Reverse yield - 87150307 - - - lane - Lane - 8 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10970 - - - forward_run_id - Forward run ID - 157 - - - reverse_run_id - Reverse run ID - 168 - - - forward_yield - Forward yield - 106598986 - - - reverse_yield - Reverse yield - 102776326 - - - lane - Lane - 1 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10971 - - - forward_run_id - Forward run ID - 157 - - - reverse_run_id - Reverse run ID - 168 - - - forward_yield - Forward yield - 98473204 - - - reverse_yield - Reverse yield - 94339936 - - - lane - Lane - 2 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10972 - - - forward_run_id - Forward run ID - 157 - - - reverse_run_id - Reverse run ID - 168 - - - forward_yield - Forward yield - 77790986 - - - reverse_yield - Reverse yield - 72947338 - - - lane - Lane - 3 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10973 - - - forward_run_id - Forward run ID - 157 - - - reverse_run_id - Reverse run ID - 168 - - - forward_yield - Forward yield - 106766148 - - - reverse_yield - Reverse yield - 104582053 - - - lane - Lane - 5 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10974 - - - forward_run_id - Forward run ID - 157 - - - reverse_run_id - Reverse run ID - 168 - - - forward_yield - Forward yield - 99248316 - - - reverse_yield - Reverse yield - 95867237 - - - lane - Lane - 6 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10975 - - - forward_run_id - Forward run ID - 157 - - - reverse_run_id - Reverse run ID - 168 - - - forward_yield - Forward yield - 110372904 - - - reverse_yield - Reverse yield - 109135723 - - - lane - Lane - 7 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10976 - - - forward_run_id - Forward run ID - 157 - - - reverse_run_id - Reverse run ID - 168 - - - forward_yield - Forward yield - 106418374 - - - reverse_yield - Reverse yield - 104772779 - - - lane - Lane - 8 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10977 - - - forward_run_id - Forward run ID - 158 - - - reverse_run_id - Reverse run ID - 170 - - - forward_yield - Forward yield - 109265259 - - - reverse_yield - Reverse yield - 96026887 - - - lane - Lane - 1 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10978 - - - forward_run_id - Forward run ID - 158 - - - reverse_run_id - Reverse run ID - 170 - - - forward_yield - Forward yield - 103854760 - - - reverse_yield - Reverse yield - 90977354 - - - lane - Lane - 2 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10979 - - - forward_run_id - Forward run ID - 158 - - - reverse_run_id - Reverse run ID - 170 - - - forward_yield - Forward yield - 97557361 - - - reverse_yield - Reverse yield - 82851246 - - - lane - Lane - 3 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10980 - - - forward_run_id - Forward run ID - 158 - - - reverse_run_id - Reverse run ID - 170 - - - forward_yield - Forward yield - 110306855 - - - reverse_yield - Reverse yield - 97564081 - - - lane - Lane - 5 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10981 - - - forward_run_id - Forward run ID - 158 - - - reverse_run_id - Reverse run ID - 170 - - - forward_yield - Forward yield - 106895194 - - - reverse_yield - Reverse yield - 93788477 - - - lane - Lane - 6 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10982 - - - forward_run_id - Forward run ID - 158 - - - reverse_run_id - Reverse run ID - 170 - - - forward_yield - Forward yield - 111620732 - - - reverse_yield - Reverse yield - 99483308 - - - lane - Lane - 7 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10983 - - - forward_run_id - Forward run ID - 158 - - - reverse_run_id - Reverse run ID - 170 - - - forward_yield - Forward yield - 59200430 - - - reverse_yield - Reverse yield - 50255914 - - - lane - Lane - 8 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10984 - - - forward_run_id - Forward run ID - 159 - - - reverse_run_id - Reverse run ID - 169 - - - forward_yield - Forward yield - 108131196 - - - reverse_yield - Reverse yield - 85744740 - - - lane - Lane - 1 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10985 - - - forward_run_id - Forward run ID - 159 - - - reverse_run_id - Reverse run ID - 169 - - - forward_yield - Forward yield - 99781776 - - - reverse_yield - Reverse yield - 81378806 - - - lane - Lane - 2 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10986 - - - forward_run_id - Forward run ID - 159 - - - reverse_run_id - Reverse run ID - 169 - - - forward_yield - Forward yield - 92965509 - - - reverse_yield - Reverse yield - 76193839 - - - lane - Lane - 3 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10987 - - - forward_run_id - Forward run ID - 159 - - - reverse_run_id - Reverse run ID - 169 - - - forward_yield - Forward yield - 106499918 - - - reverse_yield - Reverse yield - 84195212 - - - lane - Lane - 5 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10988 - - - forward_run_id - Forward run ID - 159 - - - reverse_run_id - Reverse run ID - 169 - - - forward_yield - Forward yield - 103233989 - - - reverse_yield - Reverse yield - 83848149 - - - lane - Lane - 6 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10989 - - - forward_run_id - Forward run ID - 159 - - - reverse_run_id - Reverse run ID - 169 - - - forward_yield - Forward yield - 102658233 - - - reverse_yield - Reverse yield - 80980032 - - - lane - Lane - 7 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10990 - - - forward_run_id - Forward run ID - 159 - - - reverse_run_id - Reverse run ID - 169 - - - forward_yield - Forward yield - 94051951 - - - reverse_yield - Reverse yield - 73431532 - - - lane - Lane - 8 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10991 - - - forward_run_id - Forward run ID - 166 - - - reverse_run_id - Reverse run ID - 171 - - - forward_yield - Forward yield - 88755445 - - - reverse_yield - Reverse yield - 74698496 - - - lane - Lane - 1 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10992 - - - forward_run_id - Forward run ID - 166 - - - reverse_run_id - Reverse run ID - 171 - - - forward_yield - Forward yield - 80807028 - - - reverse_yield - Reverse yield - 70311759 - - - lane - Lane - 2 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10993 - - - forward_run_id - Forward run ID - 166 - - - reverse_run_id - Reverse run ID - 171 - - - forward_yield - Forward yield - 57494060 - - - reverse_yield - Reverse yield - 48548915 - - - lane - Lane - 3 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10994 - - - forward_run_id - Forward run ID - 166 - - - reverse_run_id - Reverse run ID - 171 - - - forward_yield - Forward yield - 87450365 - - - reverse_yield - Reverse yield - 75819818 - - - lane - Lane - 5 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10995 - - - forward_run_id - Forward run ID - 166 - - - reverse_run_id - Reverse run ID - 171 - - - forward_yield - Forward yield - 71384113 - - - reverse_yield - Reverse yield - 61544796 - - - lane - Lane - 6 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10996 - - - forward_run_id - Forward run ID - 166 - - - reverse_run_id - Reverse run ID - 171 - - - forward_yield - Forward yield - 86843495 - - - reverse_yield - Reverse yield - 74448969 - - - lane - Lane - 7 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10997 - - - forward_run_id - Forward run ID - 166 - - - reverse_run_id - Reverse run ID - 171 - - - forward_yield - Forward yield - 80746420 - - - reverse_yield - Reverse yield - 69752074 - - - lane - Lane - 8 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10998 - - - forward_run_id - Forward run ID - 180 - - - reverse_run_id - Reverse run ID - 182 - - - forward_yield - Forward yield - 171227645 - - - reverse_yield - Reverse yield - 151511221 - - - lane - Lane - 1 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 10999 - - - forward_run_id - Forward run ID - 180 - - - reverse_run_id - Reverse run ID - 182 - - - forward_yield - Forward yield - 154857494 - - - reverse_yield - Reverse yield - 129844791 - - - lane - Lane - 2 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 11000 - - - forward_run_id - Forward run ID - 180 - - - reverse_run_id - Reverse run ID - 182 - - - forward_yield - Forward yield - 176490991 - - - reverse_yield - Reverse yield - 157671082 - - - lane - Lane - 3 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 11001 - - - forward_run_id - Forward run ID - 180 - - - reverse_run_id - Reverse run ID - 182 - - - forward_yield - Forward yield - 183253510 - - - reverse_yield - Reverse yield - 161635843 - - - lane - Lane - 5 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 11002 - - - forward_run_id - Forward run ID - 180 - - - reverse_run_id - Reverse run ID - 182 - - - forward_yield - Forward yield - 179726054 - - - reverse_yield - Reverse yield - 158205545 - - - lane - Lane - 6 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 11003 - - - forward_run_id - Forward run ID - 180 - - - reverse_run_id - Reverse run ID - 182 - - - forward_yield - Forward yield - 180977210 - - - reverse_yield - Reverse yield - 161096076 - - - lane - Lane - 7 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 11004 - - - forward_run_id - Forward run ID - 180 - - - reverse_run_id - Reverse run ID - 182 - - - forward_yield - Forward yield - 172577633 - - - reverse_yield - Reverse yield - 152801754 - - - lane - Lane - 8 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 11005 - - - forward_run_id - Forward run ID - 181 - - - reverse_run_id - Reverse run ID - 183 - - - forward_yield - Forward yield - 172061038 - - - reverse_yield - Reverse yield - 123546779 - - - lane - Lane - 1 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 11006 - - - forward_run_id - Forward run ID - 181 - - - reverse_run_id - Reverse run ID - 183 - - - forward_yield - Forward yield - 154919960 - - - reverse_yield - Reverse yield - 108033975 - - - lane - Lane - 2 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 11007 - - - forward_run_id - Forward run ID - 181 - - - reverse_run_id - Reverse run ID - 183 - - - forward_yield - Forward yield - 180683087 - - - reverse_yield - Reverse yield - 130040296 - - - lane - Lane - 3 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 11008 - - - forward_run_id - Forward run ID - 181 - - - reverse_run_id - Reverse run ID - 183 - - - forward_yield - Forward yield - 181377246 - - - reverse_yield - Reverse yield - 125511098 - - - lane - Lane - 5 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 11009 - - - forward_run_id - Forward run ID - 181 - - - reverse_run_id - Reverse run ID - 183 - - - forward_yield - Forward yield - 178172861 - - - reverse_yield - Reverse yield - 126027873 - - - lane - Lane - 6 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 11010 - - - forward_run_id - Forward run ID - 181 - - - reverse_run_id - Reverse run ID - 183 - - - forward_yield - Forward yield - 185142395 - - - reverse_yield - Reverse yield - 132583384 - - - lane - Lane - 7 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 11011 - - - forward_run_id - Forward run ID - 181 - - - reverse_run_id - Reverse run ID - 183 - - - forward_yield - Forward yield - 175830211 - - - reverse_yield - Reverse yield - 126462913 - - - lane - Lane - 8 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 11012 - - - forward_run_id - Forward run ID - 193 - - - reverse_run_id - Reverse run ID - 208 - - - forward_yield - Forward yield - 188905492 - - - reverse_yield - Reverse yield - 181156398 - - - lane - Lane - 1 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 11013 - - - forward_run_id - Forward run ID - 193 - - - reverse_run_id - Reverse run ID - 208 - - - forward_yield - Forward yield - 208324547 - - - reverse_yield - Reverse yield - 198865030 - - - lane - Lane - 2 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 11014 - - - forward_run_id - Forward run ID - 193 - - - reverse_run_id - Reverse run ID - 208 - - - forward_yield - Forward yield - 206786347 - - - reverse_yield - Reverse yield - 198596298 - - - lane - Lane - 3 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 11015 - - - forward_run_id - Forward run ID - 193 - - - reverse_run_id - Reverse run ID - 208 - - - forward_yield - Forward yield - 200649775 - - - reverse_yield - Reverse yield - 193064296 - - - lane - Lane - 5 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 11016 - - - forward_run_id - Forward run ID - 193 - - - reverse_run_id - Reverse run ID - 208 - - - forward_yield - Forward yield - 220603969 - - - reverse_yield - Reverse yield - 211315457 - - - lane - Lane - 6 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 11017 - - - forward_run_id - Forward run ID - 193 - - - reverse_run_id - Reverse run ID - 208 - - - forward_yield - Forward yield - 200912558 - - - reverse_yield - Reverse yield - 193230798 - - - lane - Lane - 7 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 11018 - - - forward_run_id - Forward run ID - 193 - - - reverse_run_id - Reverse run ID - 208 - - - forward_yield - Forward yield - 195706380 - - - reverse_yield - Reverse yield - 188856455 - - - lane - Lane - 8 - - - read_length - Read length - 37 - - - fragment_size_required_from - Fragment size required (from) - 200 - - - fragment_size_required_to - Fragment size required (to) - - - - - - 43998 - - - - - 43999 - - - - - 44000 - - - - - 44001 - - - - - 44022 - - - - - 44023 - - - - - 44024 - - - - - 44025 - - - - - 44026 - - - - - 44027 - - - - - 44028 - - - - - 44029 - - - - - 44030 - - - - - 44031 - - - - - 44032 - - - - - diff --git a/t/data/st_api_lims_new/st/assets/3033734.xml b/t/data/st_api_lims_new/st/assets/3033734.xml deleted file mode 100644 index 2a846202..00000000 --- a/t/data/st_api_lims_new/st/assets/3033734.xml +++ /dev/null @@ -1,81 +0,0 @@ - - - 3033734 - LibraryTube - BS_3hrsomuleSm_202790 3033734 - - pending - 1121926 - - - - - 3213730 - 3323725 - - - 3145063 - - - - 3156170 - - - fragment_size_required_from - Fragment size required (from) - 150 - - - read_length - Read length - 75 - - - fragment_size_required_to - Fragment size required (to) - 500 - - - - - 3456759 - - - fragment_size_required_from - Fragment size required (from) - 150 - - - read_length - Read length - 75 - - - fragment_size_required_to - Fragment size required (to) - 500 - - - - - 3456767 - - - fragment_size_required_from - Fragment size required (from) - 150 - - - read_length - Read length - 75 - - - fragment_size_required_to - Fragment size required (to) - 500 - - - - - diff --git a/t/data/st_api_lims_new/st/assets/3111688.xml b/t/data/st_api_lims_new/st/assets/3111688.xml deleted file mode 100644 index be2a9d96..00000000 --- a/t/data/st_api_lims_new/st/assets/3111688.xml +++ /dev/null @@ -1,157 +0,0 @@ - - - 3111688 - MultiplexedLibraryTube - 3C_HiC_Pool3 - - pending - - - 1 - ATCACGTT - 6 - - - - - - 2 - CGATGTTT - 6 - - - - - - 3 - TTAGGCAT - 6 - - - - - - 4 - TGACCACT - 6 - - - - - - 5 - ACAGTGGT - 6 - - - - - - 6 - GCCAATGT - 6 - - - - - - 7 - CAGATCTG - 6 - - - - - - 8 - ACTTGATG - 6 - - - - - - 9 - GATCAGCG - 6 - - - - - 3213734 - 3323727 - - - 3111679 - 3111680 - 3111681 - 3111682 - 3111683 - 3111684 - 3111685 - 3111686 - 3111687 - - - - 3259935 - - - fragment_size_required_from - Fragment size required (from) - 400 - - - read_length - Read length - 75 - - - fragment_size_required_to - Fragment size required (to) - 600 - - - - - 3456761 - - - fragment_size_required_from - Fragment size required (from) - 400 - - - read_length - Read length - 75 - - - fragment_size_required_to - Fragment size required (to) - 600 - - - - - 3456769 - - - fragment_size_required_from - Fragment size required (from) - 400 - - - read_length - Read length - 75 - - - fragment_size_required_to - Fragment size required (to) - 600 - - - - - diff --git a/t/data/st_api_lims_new/st/batches/12141.xml b/t/data/st_api_lims_new/st/batches/12141.xml deleted file mode 100644 index ae4023ea..00000000 --- a/t/data/st_api_lims_new/st/batches/12141.xml +++ /dev/null @@ -1,1463 +0,0 @@ - - - 12141 - released - - - - - - 1 - ATCACGTTAT - 7 - - - - - - 2 - CGATGTTTAT - 7 - - - - - - 3 - TTAGGCATAT - 7 - - - - - - 4 - TGACCACTAT - 7 - - - - - - 5 - ACAGTGGTAT - 7 - - - - - - 6 - GCCAATGTAT - 7 - - - - - - 7 - CAGATCTGAT - 7 - - - - - - 8 - ACTTGATGAT - 7 - - - - - - 9 - GATCAGCGAT - 7 - - - - - - 10 - TAGCTTGTAT - 7 - - - - - - 11 - GGCTACAGAT - 7 - - - - - - 12 - CTTGTACTAT - 7 - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - 1 - ATCACGTTAT - 7 - - - - - - 2 - CGATGTTTAT - 7 - - - - - - 3 - TTAGGCATAT - 7 - - - - - - 4 - TGACCACTAT - 7 - - - - - - 5 - ACAGTGGTAT - 7 - - - - - - 6 - GCCAATGTAT - 7 - - - - - - 7 - CAGATCTGAT - 7 - - - - - - 8 - ACTTGATGAT - 7 - - - - - - 9 - GATCAGCGAT - 7 - - - - - - 10 - TAGCTTGTAT - 7 - - - - - - 11 - GGCTACAGAT - 7 - - - - - - 12 - CTTGTACTAT - 7 - - - - - - 13 - TGGTTGTTAT - 7 - - - - - - 14 - TCTCGGTTAT - 7 - - - - - - 15 - TAAGCGTTAT - 7 - - - - - - 16 - TCCGTCTTAT - 7 - - - - - - 17 - TGTACCTTAT - 7 - - - - - - 18 - TTCTGTGTAT - 7 - - - - - - 19 - TCTGCTGTAT - 7 - - - - - - 20 - TTGGAGGTAT - 7 - - - - - - 21 - TCGAGCGTAT - 7 - - - - - - 22 - TGATACGTAT - 7 - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - 1 - ATCACGTTAT - 7 - - - - - - 2 - CGATGTTTAT - 7 - - - - - - 3 - TTAGGCATAT - 7 - - - - - - 4 - TGACCACTAT - 7 - - - - - - 5 - ACAGTGGTAT - 7 - - - - - - 6 - GCCAATGTAT - 7 - - - - - - 7 - CAGATCTGAT - 7 - - - - - - 8 - ACTTGATGAT - 7 - - - - - - 9 - GATCAGCGAT - 7 - - - - - - 10 - TAGCTTGTAT - 7 - - - - - - 11 - GGCTACAGAT - 7 - - - - - - 12 - CTTGTACTAT - 7 - - - - - - 13 - TGGTTGTTAT - 7 - - - - - - 14 - TCTCGGTTAT - 7 - - - - - - 15 - TAAGCGTTAT - 7 - - - - - - 16 - TCCGTCTTAT - 7 - - - - - - 17 - TGTACCTTAT - 7 - - - - - - 18 - TTCTGTGTAT - 7 - - - - - - 19 - TCTGCTGTAT - 7 - - - - - - 20 - TTGGAGGTAT - 7 - - - - - - 21 - TCGAGCGTAT - 7 - - - - - - 22 - TGATACGTAT - 7 - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - 1 - ATCACGTTAT - 7 - - - - - - 2 - CGATGTTTAT - 7 - - - - - - 3 - TTAGGCATAT - 7 - - - - - - 4 - TGACCACTAT - 7 - - - - - - 5 - ACAGTGGTAT - 7 - - - - - - 6 - GCCAATGTAT - 7 - - - - - - 7 - CAGATCTGAT - 7 - - - - - - 8 - ACTTGATGAT - 7 - - - - - - 9 - GATCAGCGAT - 7 - - - - - - 10 - TAGCTTGTAT - 7 - - - - - - 11 - GGCTACAGAT - 7 - - - - - - 12 - CTTGTACTAT - 7 - - - - - - 13 - TGGTTGTTAT - 7 - - - - - - 14 - TCTCGGTTAT - 7 - - - - - - 15 - TAAGCGTTAT - 7 - - - - - - 16 - TCCGTCTTAT - 7 - - - - - - 17 - TGTACCTTAT - 7 - - - - - - 18 - TTCTGTGTAT - 7 - - - - - - 19 - TCTGCTGTAT - 7 - - - - - - 20 - TTGGAGGTAT - 7 - - - - - - 21 - TCGAGCGTAT - 7 - - - - - - 22 - TGATACGTAT - 7 - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - 1 - ATCACGTTAT - 7 - - - - - - 2 - CGATGTTTAT - 7 - - - - - - 3 - TTAGGCATAT - 7 - - - - - - 4 - TGACCACTAT - 7 - - - - - - 5 - ACAGTGGTAT - 7 - - - - - - 6 - GCCAATGTAT - 7 - - - - - - 7 - CAGATCTGAT - 7 - - - - - - 8 - ACTTGATGAT - 7 - - - - - - 9 - GATCAGCGAT - 7 - - - - - - 10 - TAGCTTGTAT - 7 - - - - - - 11 - GGCTACAGAT - 7 - - - - - - 12 - CTTGTACTAT - 7 - - - - - - 13 - TGGTTGTTAT - 7 - - - - - - 14 - TCTCGGTTAT - 7 - - - - - - 15 - TAAGCGTTAT - 7 - - - - - - 16 - TCCGTCTTAT - 7 - - - - - - 17 - TGTACCTTAT - 7 - - - - - - 18 - TTCTGTGTAT - 7 - - - - - - 19 - TCTGCTGTAT - 7 - - - - - - 20 - TTGGAGGTAT - 7 - - - - - - 21 - TCGAGCGTAT - 7 - - - - - - 22 - TGATACGTAT - 7 - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - 1 - ATCACGTTAT - 7 - - - - - - 2 - CGATGTTTAT - 7 - - - - - - 3 - TTAGGCATAT - 7 - - - - - - 4 - TGACCACTAT - 7 - - - - - - 5 - ACAGTGGTAT - 7 - - - - - - 6 - GCCAATGTAT - 7 - - - - - - 7 - CAGATCTGAT - 7 - - - - - - 8 - ACTTGATGAT - 7 - - - - - - 9 - GATCAGCGAT - 7 - - - - - - 10 - TAGCTTGTAT - 7 - - - - - - 11 - GGCTACAGAT - 7 - - - - - - 12 - CTTGTACTAT - 7 - - - - - - 13 - TGGTTGTTAT - 7 - - - - - - 14 - TCTCGGTTAT - 7 - - - - - - 15 - TAAGCGTTAT - 7 - - - - - - 16 - TCCGTCTTAT - 7 - - - - - - 17 - TGTACCTTAT - 7 - - - - - - 18 - TTCTGTGTAT - 7 - - - - - - 19 - TCTGCTGTAT - 7 - - - - - - 20 - TTGGAGGTAT - 7 - - - - - - 21 - TCGAGCGTAT - 7 - - - - - - 22 - TGATACGTAT - 7 - - - - - - 23 - TGCATAGTAT - 7 - - - - - - 24 - TTGACTCTAT - 7 - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - 1 - ATCACGTTAT - 7 - - - - - - 2 - CGATGTTTAT - 7 - - - - - - 3 - TTAGGCATAT - 7 - - - - - - 4 - TGACCACTAT - 7 - - - - - - 5 - ACAGTGGTAT - 7 - - - - - - 6 - GCCAATGTAT - 7 - - - - - - 7 - CAGATCTGAT - 7 - - - - - - 8 - ACTTGATGAT - 7 - - - - - - 9 - GATCAGCGAT - 7 - - - - - - 10 - TAGCTTGTAT - 7 - - - - - - 11 - GGCTACAGAT - 7 - - - - - - 12 - CTTGTACTAT - 7 - - - - - - 13 - TGGTTGTTAT - 7 - - - - - - 14 - TCTCGGTTAT - 7 - - - - - - 15 - TAAGCGTTAT - 7 - - - - - - 16 - TCCGTCTTAT - 7 - - - - - - 17 - TGTACCTTAT - 7 - - - - - - 18 - TTCTGTGTAT - 7 - - - - - - 19 - TCTGCTGTAT - 7 - - - - - - 20 - TTGGAGGTAT - 7 - - - - - - 21 - TCGAGCGTAT - 7 - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - 1 - ATCACGTTAT - 7 - - - - - - 2 - CGATGTTTAT - 7 - - - - - - 3 - TTAGGCATAT - 7 - - - - - - 4 - TGACCACTAT - 7 - - - - - - 5 - ACAGTGGTAT - 7 - - - - - - 6 - GCCAATGTAT - 7 - - - - - - 7 - CAGATCTGAT - 7 - - - - - - 8 - ACTTGATGAT - 7 - - - - - - 9 - GATCAGCGAT - 7 - - - - - - 10 - TAGCTTGTAT - 7 - - - - - - 11 - GGCTACAGAT - 7 - - - - - - 12 - CTTGTACTAT - 7 - - - - - - 13 - TGGTTGTTAT - 7 - - - - - - 14 - TCTCGGTTAT - 7 - - - - - - 15 - TAAGCGTTAT - 7 - - - - - - 16 - TCCGTCTTAT - 7 - - - - - - 17 - TGTACCTTAT - 7 - - - - - - 18 - TTCTGTGTAT - 7 - - - - - - 19 - TCTGCTGTAT - 7 - - - - - - 20 - TTGGAGGTAT - 7 - - - - - - 21 - TCGAGCGTAT - 7 - - - - - - 22 - TGATACGTAT - 7 - - - - - - 23 - TGCATAGTAT - 7 - - - - - - 24 - TTGACTCTAT - 7 - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - diff --git a/t/data/st_api_lims_new/st/batches/12378.xml b/t/data/st_api_lims_new/st/batches/12378.xml deleted file mode 100644 index a4d3fb39..00000000 --- a/t/data/st_api_lims_new/st/batches/12378.xml +++ /dev/null @@ -1,443 +0,0 @@ - - - 12378 - released - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1 - ATCACGTT - 6 - - - - - - 2 - CGATGTTT - 6 - - - - - - 3 - TTAGGCAT - 6 - - - - - - 4 - TGACCACT - 6 - - - - - - 5 - ACAGTGGT - 6 - - - - - - 6 - GCCAATGT - 6 - - - - - - 7 - CAGATCTG - 6 - - - - - - 8 - ACTTGATG - 6 - - - - - - 9 - GATCAGCG - 6 - - - - - - - - - - 1 - ATCACGTTAT - 7 - - - - - - 2 - CGATGTTTAT - 7 - - - - - - 3 - TTAGGCATAT - 7 - - - - - - 4 - TGACCACTAT - 7 - - - - - - 5 - ACAGTGGTAT - 7 - - - - - - 6 - GCCAATGTAT - 7 - - - - - - 7 - CAGATCTGAT - 7 - - - - - - 8 - ACTTGATGAT - 7 - - - - - - 9 - GATCAGCGAT - 7 - - - - - - 10 - TAGCTTGTAT - 7 - - - - - - 11 - GGCTACAGAT - 7 - - - - - - 12 - CTTGTACTAT - 7 - - - - - - 13 - TGGTTGTTAT - 7 - - - - - - 14 - TCTCGGTTAT - 7 - - - - - - 15 - TAAGCGTTAT - 7 - - - - - - 16 - TCCGTCTTAT - 7 - - - - - - 17 - TGTACCTTAT - 7 - - - - - - 18 - TTCTGTGTAT - 7 - - - - - - 19 - TCTGCTGTAT - 7 - - - - - - 20 - TTGGAGGTAT - 7 - - - - - - 21 - TCGAGCGTAT - 7 - - - - - - 22 - TGATACGTAT - 7 - - - - - - 23 - TGCATAGTAT - 7 - - - - - - 24 - TTGACTCTAT - 7 - - - - - - - - - - 1 - ATCACGTTAT - 4 - - - - - - 2 - CGATGTTTAT - 4 - - - - - - 3 - TTAGGCATAT - 4 - - - - - - 4 - TGACCACTAT - 4 - - - - - - 5 - ACAGTGGTAT - 4 - - - - - - 6 - GCCAATGTAT - 4 - - - - - - 7 - CAGATCTGAT - 4 - - - - - - 8 - ACTTGATGAT - 4 - - - - - - 9 - GATCAGCGAT - 4 - - - - - - 10 - TAGCTTGTAT - 4 - - - - - - 11 - GGCTACAGAT - 4 - - - - - - 12 - CTTGTACTAT - 4 - - - - - - - - - - 1 - ATCACGTTAT - 4 - - - - - - 2 - CGATGTTTAT - 4 - - - - - - 3 - TTAGGCATAT - 4 - - - - - - 4 - TGACCACTAT - 4 - - - - - - - diff --git a/t/data/st_api_lims_new/st/batches/13410.xml b/t/data/st_api_lims_new/st/batches/13410.xml deleted file mode 100644 index 5e464241..00000000 --- a/t/data/st_api_lims_new/st/batches/13410.xml +++ /dev/null @@ -1,527 +0,0 @@ - - - 13410 - released - - - - - - 2 - CGATGT - 3 - - - - - - 5 - ACAGTG - 3 - - - - - - 6 - GCCAAT - 3 - - - - - - 7 - CAGATC - 3 - - - - - - 8 - ACTTGA - 3 - - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - 1 - ATCACG - 3 - - - - - - 2 - CGATGT - 3 - - - - - - 4 - TGACCA - 3 - - - - - - 5 - ACAGTG - 3 - - - - - - 7 - CAGATC - 3 - - - - - - 8 - ACTTGA - 3 - - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - 1 - ATCACG - 3 - - - - - - 2 - CGATGT - 3 - - - - - - 4 - TGACCA - 3 - - - - - - 5 - ACAGTG - 3 - - - - - - 7 - CAGATC - 3 - - - - - - 8 - ACTTGA - 3 - - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - 1 - ATCACG - 3 - - - - - - 2 - CGATGT - 3 - - - - - - 3 - TTAGGC - 3 - - - - - - 4 - TGACCA - 3 - - - - - - 6 - GCCAAT - 3 - - - - - - 7 - CAGATC - 3 - - - - - - 8 - ACTTGA - 3 - - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - 1 - ATCACG - 3 - - - - - - 2 - CGATGT - 3 - - - - - - 3 - TTAGGC - 3 - - - - - - 4 - TGACCA - 3 - - - - - - 6 - GCCAAT - 3 - - - - - - 7 - CAGATC - 3 - - - - - - 8 - ACTTGA - 3 - - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - 1 - ATCACG - 3 - - - - - - 2 - CGATGT - 3 - - - - - - 3 - TTAGGC - 3 - - - - - - 4 - TGACCA - 3 - - - - - - 5 - ACAGTG - 3 - - - - - - 6 - GCCAAT - 3 - - - - - - 7 - CAGATC - 3 - - - - - - 8 - ACTTGA - 3 - - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - 1 - ATCACG - 3 - - - - - - 2 - CGATGT - 3 - - - - - - 3 - TTAGGC - 3 - - - - - - 4 - TGACCA - 3 - - - - - - 5 - ACAGTG - 3 - - - - - - 6 - GCCAAT - 3 - - - - - - 7 - CAGATC - 3 - - - - - - 8 - ACTTGA - 3 - - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - 1 - ATCACG - 3 - - - - - - 2 - CGATGT - 3 - - - - - - 5 - ACAGTG - 3 - - - - - - 6 - GCCAAT - 3 - - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - diff --git a/t/data/st_api_lims_new/st/batches/17763.xml b/t/data/st_api_lims_new/st/batches/17763.xml deleted file mode 100644 index 4f688ef4..00000000 --- a/t/data/st_api_lims_new/st/batches/17763.xml +++ /dev/null @@ -1,944 +0,0 @@ - - - 17763 - released - - - - - - 1 - ATCACGTT - 6 - - - - - - 2 - CGATGTTT - 6 - - - - - - 3 - TTAGGCAT - 6 - - - - - - 4 - TGACCACT - 6 - - - - - - 5 - ACAGTGGT - 6 - - - - - - 6 - GCCAATGT - 6 - - - - - - 7 - CAGATCTG - 6 - - - - - - 8 - ACTTGATG - 6 - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - 33 - TCGAAGTG - 6 - - - - - - 34 - TAACGCTG - 6 - - - - - - 35 - TTGGTATG - 6 - - - - - - 36 - TGAACTGG - 6 - - - - - - 37 - TACTTCGG - 6 - - - - - - 38 - TCTCACGG - 6 - - - - - - 39 - TCAGGAGG - 6 - - - - - - 40 - TAAGTTCG - 6 - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - 33 - TCGAAGTG - 6 - - - - - - 34 - TAACGCTG - 6 - - - - - - 35 - TTGGTATG - 6 - - - - - - 36 - TGAACTGG - 6 - - - - - - 37 - TACTTCGG - 6 - - - - - - 38 - TCTCACGG - 6 - - - - - - 39 - TCAGGAGG - 6 - - - - - - 40 - TAAGTTCG - 6 - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - 1 - ATCACGTT - 6 - - - - - - 2 - CGATGTTT - 6 - - - - - - 3 - TTAGGCAT - 6 - - - - - - 4 - TGACCACT - 6 - - - - - - 5 - ACAGTGGT - 6 - - - - - - 6 - GCCAATGT - 6 - - - - - - 7 - CAGATCTG - 6 - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - 11 - GGCTACAG - 6 - - - - - - 12 - CTTGTACT - 6 - - - - - - 13 - TGGTTGTT - 6 - - - - - - 14 - TCTCGGTT - 6 - - - - - - 15 - TAAGCGTT - 6 - - - - - - 16 - TCCGTCTT - 6 - - - - - - 17 - TGTACCTT - 6 - - - - - - 18 - TTCTGTGT - 6 - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - 19 - TCTGCTGT - 6 - - - - - - 20 - TTGGAGGT - 6 - - - - - - 21 - TCGAGCGT - 6 - - - - - - 22 - TGATACGT - 6 - - - - - - 23 - TGCATAGT - 6 - - - - - - 24 - TTGACTCT - 6 - - - - - - 25 - TGCGATCT - 6 - - - - - - 26 - TTCCTGCT - 6 - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - 1 - ATCACGTT - 6 - - - - - - 2 - CGATGTTT - 6 - - - - - - 3 - TTAGGCAT - 6 - - - - - - 4 - TGACCACT - 6 - - - - - - 5 - ACAGTGGT - 6 - - - - - - 6 - GCCAATGT - 6 - - - - - - 7 - CAGATCTG - 6 - - - - - - 8 - ACTTGATG - 6 - - - - - - 9 - GATCAGCG - 6 - - - - - - 10 - TAGCTTGT - 6 - - - - - - 11 - GGCTACAG - 6 - - - - - - 12 - CTTGTACT - 6 - - - - - - 13 - TGGTTGTT - 6 - - - - - - 14 - TCTCGGTT - 6 - - - - - - 15 - TAAGCGTT - 6 - - - - - - 16 - TCCGTCTT - 6 - - - - - - 17 - TGTACCTT - 6 - - - - - - 18 - TTCTGTGT - 6 - - - - - - 19 - TCTGCTGT - 6 - - - - - - 20 - TTGGAGGT - 6 - - - - - - 21 - TCGAGCGT - 6 - - - - - - 22 - TGATACGT - 6 - - - - - - 23 - TGCATAGT - 6 - - - - - - 24 - TTGACTCT - 6 - - - - - - 25 - TGCGATCT - 6 - - - - - - 26 - TTCCTGCT - 6 - - - - - - 27 - TAGTGACT - 6 - - - - - - 28 - TACAGGAT - 6 - - - - - - 29 - TCCTCAAT - 6 - - - - - - 30 - TGTGGTTG - 6 - - - - - - 31 - TAGTCTTG - 6 - - - - - - 32 - TTCCATTG - 6 - - - - - - 33 - TCGAAGTG - 6 - - - - - - 34 - TAACGCTG - 6 - - - - - - 35 - TTGGTATG - 6 - - - - - - 36 - TGAACTGG - 6 - - - - - - 37 - TACTTCGG - 6 - - - - - - 38 - TCTCACGG - 6 - - - - - - 39 - TCAGGAGG - 6 - - - - - - 40 - TAAGTTCG - 6 - - - - - - 41 - TCCAGTCG - 6 - - - - - - 42 - TGTATGCG - 6 - - - - - - 43 - TCATTGAG - 6 - - - - - - 44 - TGGCTCAG - 6 - - - - - - 45 - TATGCCAG - 6 - - - - - - 46 - TCAGATTC - 6 - - - - - - 47 - TACTAGTC - 6 - - - - - - 48 - TTCAGCTC - 6 - - - - - - 49 - TGTCTATC - 6 - - - - - - 50 - TATGTGGC - 6 - - - - - - 51 - TTACTCGC - 6 - - - - - - 52 - TCGTTAGC - 6 - - - - - - 53 - TACCGAGC - 6 - - - - - - 54 - TGTTCTCC - 6 - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - 55 - TTCGCACC - 6 - - - - - - 56 - TTGCGTAC - 6 - - - - - - 57 - TCTACGAC - 6 - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - diff --git a/t/data/st_api_lims_new/st/batches/22061.xml b/t/data/st_api_lims_new/st/batches/22061.xml deleted file mode 100644 index 078dda4e..00000000 --- a/t/data/st_api_lims_new/st/batches/22061.xml +++ /dev/null @@ -1,83 +0,0 @@ - - - 22061 - released - - - - - - 66 - TGAAGCCA - 6 - - - - - - 67 - TACCACCA - 6 - - - - - - 68 - TGCGTGAA - 6 - - - - - - 69 - GGTGAGTT - 6 - - - - - - 70 - GATCTCTT - 6 - - - - - - 71 - GTGTCCTT - 6 - - - - - - 72 - GACGGATT - 6 - - - - - - 73 - GCAACATT - 6 - - - - - - 74 - GGTCGTGT - 6 - - - - - - - diff --git a/t/data/st_api_lims_new/st/batches/22829.xml b/t/data/st_api_lims_new/st/batches/22829.xml deleted file mode 100644 index a057eb1b..00000000 --- a/t/data/st_api_lims_new/st/batches/22829.xml +++ /dev/null @@ -1,916 +0,0 @@ - - - 22829 - released - - - - - - 65 - TTGTTCCA - 6 - - - Human all exon V5 - - - - - - 66 - TGAAGCCA - 6 - - - Human all exon V5 - - - - - - 67 - TACCACCA - 6 - - - Human all exon V5 - - - - - - 68 - TGCGTGAA - 6 - - - Human all exon V5 - - - - - - 69 - GGTGAGTT - 6 - - - Human all exon V5 - - - - - - 70 - GATCTCTT - 6 - - - Human all exon V5 - - - - - - 71 - GTGTCCTT - 6 - - - Human all exon V5 - - - - - - 72 - GACGGATT - 6 - - - Human all exon V5 - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - 73 - GCAACATT - 6 - - - Human all exon V5 - - - - - - 74 - GGTCGTGT - 6 - - - Human all exon V5 - - - - - - 75 - GAATCTGT - 6 - - - Human all exon V5 - - - - - - 76 - GTACATCT - 6 - - - Human all exon V5 - - - - - - 77 - GAGGTGCT - 6 - - - Human all exon V5 - - - - - - 78 - GCATGGCT - 6 - - - Human all exon V5 - - - - - - 79 - GTTAGCCT - 6 - - - Human all exon V5 - - - - - - 80 - GTCGCTAT - 6 - - - Human all exon V5 - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - 81 - GGAATGAT - 6 - - - Human all exon V5 - - - - - - 82 - GAGCCAAT - 6 - - - Human all exon V5 - - - - - - 83 - GCTCCTTG - 6 - - - Human all exon V5 - - - - - - 84 - GTAAGGTG - 6 - - - Human all exon V5 - - - - - - 85 - GAGGATGG - 6 - - - Human all exon V5 - - - - - - 86 - GTTGTCGG - 6 - - - Human all exon V5 - - - - - - 87 - GGATTAGG - 6 - - - Human all exon V5 - - - - - - 88 - GATAGAGG - 6 - - - Human all exon V5 - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - 89 - GTGTGTCG - 6 - - - Human all exon V5 - - - - - - 90 - GCAATCCG - 6 - - - Human all exon V5 - - - - - - 91 - GACCTTAG - 6 - - - Human all exon V5 - - - - - - 92 - GCCTGTTC - 6 - - - Human all exon V5 - - - - - - 93 - GCACTGTC - 6 - - - Human all exon V5 - - - - - - 94 - GCTAACTC - 6 - - - Human all exon V5 - - - - - - 95 - GATTCATC - 6 - - - Human all exon V5 - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - 1 - ATCACGTT - 6 - - - - - - 2 - CGATGTTT - 6 - - - - - - 3 - TTAGGCAT - 6 - - - - - - 4 - TGACCACT - 6 - - - - - - 5 - ACAGTGGT - 6 - - - - - - 6 - GCCAATGT - 6 - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - 1 - ATCACGTT - 6 - - - - - - 2 - CGATGTTT - 6 - - - - - - 3 - TTAGGCAT - 6 - - - - - - 4 - TGACCACT - 6 - - - - - - 5 - ACAGTGGT - 6 - - - - - - 6 - GCCAATGT - 6 - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - 1 - ATCACG - 35 - - - - - - 2 - CGATGT - 35 - - - - - - 3 - TTAGGC - 35 - - - - - - 4 - TGACCA - 35 - - - - - - 5 - ACAGTG - 35 - - - - - - 6 - GCCAAT - 35 - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - 1 - ATCACGTT - 6 - - - - - - 2 - CGATGTTT - 6 - - - - - - 3 - TTAGGCAT - 6 - - - - - - 4 - TGACCACT - 6 - - - - - - 5 - ACAGTGGT - 6 - - - - - - 6 - GCCAATGT - 6 - - - - - - 7 - CAGATCTG - 6 - - - - - - 8 - ACTTGATG - 6 - - - - - - 9 - GATCAGCG - 6 - - - - - - 10 - TAGCTTGT - 6 - - - - - - 11 - GGCTACAG - 6 - - - - - - 12 - CTTGTACT - 6 - - - - - - 13 - TGGTTGTT - 6 - - - - - - 14 - TCTCGGTT - 6 - - - - - - 15 - TAAGCGTT - 6 - - - - - - 16 - TCCGTCTT - 6 - - - - - - 17 - TGTACCTT - 6 - - - - - - 18 - TTCTGTGT - 6 - - - - - - 19 - TCTGCTGT - 6 - - - - - - 20 - TTGGAGGT - 6 - - - - - - 21 - TCGAGCGT - 6 - - - - - - 22 - TGATACGT - 6 - - - - - - 23 - TGCATAGT - 6 - - - - - - 24 - TTGACTCT - 6 - - - - - - 25 - TGCGATCT - 6 - - - - - - 26 - TTCCTGCT - 6 - - - - - - 27 - TAGTGACT - 6 - - - - - - 28 - TACAGGAT - 6 - - - - - - 29 - TCCTCAAT - 6 - - - - - - 30 - TGTGGTTG - 6 - - - - - - 31 - TAGTCTTG - 6 - - - - - - 32 - TTCCATTG - 6 - - - - - - 33 - TCGAAGTG - 6 - - - - - - 34 - TAACGCTG - 6 - - - - - - 35 - TTGGTATG - 6 - - - - - - 36 - TGAACTGG - 6 - - - - - - 37 - TACTTCGG - 6 - - - - - - 38 - TCTCACGG - 6 - - - - - - 39 - TCAGGAGG - 6 - - - - - - 40 - TAAGTTCG - 6 - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - diff --git a/t/data/st_api_lims_new/st/projects/429.xml b/t/data/st_api_lims_new/st/projects/429.xml deleted file mode 100644 index 265eb596..00000000 --- a/t/data/st_api_lims_new/st/projects/429.xml +++ /dev/null @@ -1,37 +0,0 @@ - - - 429 - 3C and HiC of Plasmodium falciparum IT - true - active - - - External funding source - - - - Project cost code - S0701 - - - Sequencing budget cost centre - - - - Genotyping committee Tracking ID - - - - Collaborators - Prof. Chris Newbold - - - Funding comments - - - - Project funding model - Internal - - - diff --git a/t/data/st_api_lims_new/st/projects/810.xml b/t/data/st_api_lims_new/st/projects/810.xml deleted file mode 100644 index fd5b3290..00000000 --- a/t/data/st_api_lims_new/st/projects/810.xml +++ /dev/null @@ -1,37 +0,0 @@ - - - 810 - Schistosoma mansoni methylome - true - active - - - External funding source - - - - Project cost code - S0702 - - - Sequencing budget cost centre - - - - Genotyping committee Tracking ID - - - - Collaborators - Karl Hoffmann - - - Funding comments - - - - Project funding model - Internal - - - diff --git a/t/data/st_api_lims_new/st/samples/1060341.xml b/t/data/st_api_lims_new/st/samples/1060341.xml deleted file mode 100644 index d92ac203..00000000 --- a/t/data/st_api_lims_new/st/samples/1060341.xml +++ /dev/null @@ -1,210 +0,0 @@ - - - 1060341 - SMRU152 - 1703 - false - - - Organism - Streptococcus pneumoniae - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - - - - Common Name - Streptococcus pneumoniae - - - Strain - NT - - - TAXON ID - 1313 - - - ENA Sample Accession Number - ERS019310 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 1703 - diff --git a/t/data/st_api_lims_new/st/samples/10881.xml b/t/data/st_api_lims_new/st/samples/10881.xml deleted file mode 100644 index aef5acbc..00000000 --- a/t/data/st_api_lims_new/st/samples/10881.xml +++ /dev/null @@ -1,207 +0,0 @@ - - - 10881 - H083280501 - 427 - - - Phenotype - - - - Sample purified - - - - TAXON ID - 224729 - - - Country of origin - - - - Treatment - - - - Time Point - - - - Date of sample extraction - - - - Sample Description - - - - ENA Sample Accession Number - ERS003167 - - - Common Name - Salmonella enterica subsp. enterica serovar Java - - - Gender - - - - Mother - - - - Ethnicity - - - - Compound - - - - Cell Type - - - - Age - - - - Genotype - - - - Volume (µl) - - - - Dose - - - - Organism Part - - - - Growth Condition - - - - Concentration - - - - Public Name - H083280501 - - - Subject - - - - RNAi - - - - Concentration determind by - - - - Is re-submitted? - - - - DNA source - - - - Sample extraction method - - - - Disease - - - - Sibling - - - - Strain - S java - - - Cohort - - - - Immunoprecipitate - - - - Disease State - - - - Sample storage conditions - - - - Sample type - - - - Date of sample collection - - - - Developmental Stage - - - - Purification method - - - - Sample Visibility - Hold - - - GC content - neutral - - - Father - - - - Plate - - - - Geographical region - - - - Replicate - - - - Organism - Salmonella enterica Java - - - Reference Genome - - - - - - - - - - 427 - diff --git a/t/data/st_api_lims_new/st/samples/1093797.xml b/t/data/st_api_lims_new/st/samples/1093797.xml deleted file mode 100644 index 93728f12..00000000 --- a/t/data/st_api_lims_new/st/samples/1093797.xml +++ /dev/null @@ -1,209 +0,0 @@ - - - 1093797 - RPR_ND - 1772 - false - - - Organism - human - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Unknown - - - DNA source - Genomic - - - Public Name - RPR-Neu-diff - - - Common Name - Homo sapiens - - - Strain - - - - TAXON ID - 9606 - - - ENA Sample Accession Number - EGAN00001001709 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - 1772 - diff --git a/t/data/st_api_lims_new/st/samples/1093818.xml b/t/data/st_api_lims_new/st/samples/1093818.xml deleted file mode 100644 index db5a764b..00000000 --- a/t/data/st_api_lims_new/st/samples/1093818.xml +++ /dev/null @@ -1,209 +0,0 @@ - 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ERS024591 - - - TAXON ID - 624 - - - Strain - 109305 - - - Common Name - Shigella sonnei - - - Public Name - SS109305 - - - Age - - - - Reference Genome - - - - - - - - - - - - 297 - diff --git a/t/data/st_api_lims_new/st/samples/1093819.xml b/t/data/st_api_lims_new/st/samples/1093819.xml deleted file mode 100644 index e67d173d..00000000 --- a/t/data/st_api_lims_new/st/samples/1093819.xml +++ /dev/null @@ -1,209 +0,0 @@ - - - 1093819 - SS109114 - 297 - - - Disease - - - - Subject - - - - Treatment - - - - Time Point - - - - Organism Part - - - - RNAi - - - - Growth Condition - - - - Immunoprecipitate - - - - DNA source - Genomic - - - Geographical region - - - - Compound - - - - Disease State - - - - Cell Type - - - - Developmental Stage - - - - Gender - Not Applicable - - - Volume (µl) - - - - Country of origin - - - - Phenotype - - - - Genotype - - - - Sample storage conditions - - - - Sample type - - - - Concentration determind by - - - - Concentration - - - - Purification method - 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- - - - - - - - - 297 - diff --git a/t/data/st_api_lims_new/st/samples/1093821.xml b/t/data/st_api_lims_new/st/samples/1093821.xml deleted file mode 100644 index e022c09b..00000000 --- a/t/data/st_api_lims_new/st/samples/1093821.xml +++ /dev/null @@ -1,209 +0,0 @@ - - - 1093821 - SS117077 - 297 - - - Disease - - - - Subject - - - - Treatment - - - - Time Point - - - - Organism Part - - - - RNAi - - - - Growth Condition - - - - Immunoprecipitate - - - - DNA source - Genomic - - - Geographical region - - - - Compound - - - - Disease State - - - - Cell Type - - - - Developmental Stage - - - - Gender - Not Applicable - - - Volume (µl) - - - - Country of origin - - - - Phenotype - - - - Genotype - - - - Sample storage conditions - - - - Sample type - - - - Concentration determind by - - - - Concentration - - - - Purification method - - - - Sample purified - - - - Sample extraction method - - - - Date of sample extraction - - - - Date of sample collection - - - - Is re-submitted? - - - - Sibling - - - - Cohort - - - - Dose - - - - GC content - Neutral - - - Replicate - - - - Father - - - - Mother - - - - Plate - - - - Ethnicity - - - - Organism - Shigella sonnei - - - Sample Visibility - Hold - - - Sample Description - - - - ENA Sample Accession Number - ERS024594 - - - TAXON ID - 624 - - - Strain - 117077 - - - Common Name - Shigella sonnei - - - Public Name - SS117077 - - - Age - - - - Reference Genome - - - - - - - - - - - - 297 - diff --git a/t/data/st_api_lims_new/st/samples/1093822.xml b/t/data/st_api_lims_new/st/samples/1093822.xml deleted file mode 100644 index f994d893..00000000 --- a/t/data/st_api_lims_new/st/samples/1093822.xml +++ /dev/null @@ -1,209 +0,0 @@ - - - 1093822 - SS127358 - 297 - - - Disease - - - - Subject - - - - Treatment - - - - Time Point - - - - Organism Part - - - - RNAi - - - - Growth Condition - - - - Immunoprecipitate - - - - DNA source - Genomic - - - Geographical region - - - - Compound - - - - Disease State - - - - Cell Type - - - - Developmental Stage - - - - Gender - Not Applicable - - - Volume (µl) - - - - Country of origin - - - - Phenotype - - - - Genotype - - - - Sample storage conditions - - - - Sample type - - - - Concentration determind by - - - - Concentration - - - - Purification method - - - - Sample purified - - - - Sample extraction method - - - - Date of sample extraction - - - - Date of sample collection - - - - Is re-submitted? - - - - Sibling - - - - Cohort - - - - Dose - - - - GC content - Neutral - - - Replicate - - - - Father - - - - Mother - - - - Plate - - - - Ethnicity - - - - Organism - Shigella sonnei - - - Sample Visibility - Hold - - - Sample Description - - - - ENA Sample Accession Number - ERS024595 - - - TAXON ID - 624 - - - Strain - 127358 - - - Common Name - Shigella sonnei - - - Public Name - SS127358 - - - Age - - - - Reference Genome - - - - - - - - - - - - 297 - diff --git a/t/data/st_api_lims_new/st/samples/1093823.xml b/t/data/st_api_lims_new/st/samples/1093823.xml deleted file mode 100644 index bd678592..00000000 --- a/t/data/st_api_lims_new/st/samples/1093823.xml +++ /dev/null @@ -1,209 +0,0 @@ - - - 1093823 - SS129050 - 297 - - - Disease - - - - Subject - - - - Treatment - - - - Time Point - - - - Organism Part - - - - RNAi - - - - Growth Condition - - - - Immunoprecipitate - - - - DNA source - Genomic - - - Geographical region - - - - Compound - - - - Disease State - - - - Cell Type - - - - Developmental Stage - - - - Gender - Not Applicable - - - Volume (µl) - - - - Country of origin - - - - Phenotype - - - - Genotype - - - - Sample storage conditions - - - - Sample type - - - - Concentration determind by - - - - Concentration - - - - Purification method - - - - Sample purified - - - - Sample extraction method - - - - Date of sample extraction - - - - Date of sample collection - - - - Is re-submitted? - - - - Sibling - - - - Cohort - - - - Dose - - - - GC content - Neutral - - - Replicate - - - - Father - - - - Mother - - - - Plate - - - - Ethnicity - - - - Organism - Shigella sonnei - - - Sample Visibility - Hold - - - Sample Description - - - - ENA Sample Accession Number - ERS024596 - - - TAXON ID - 624 - - - Strain - 129050 - - - Common Name - Shigella sonnei - - - Public Name - SS129050 - - - Age - - - - Reference Genome - - - - - - - - - - - - 297 - diff --git a/t/data/st_api_lims_new/st/samples/1093824.xml b/t/data/st_api_lims_new/st/samples/1093824.xml deleted file mode 100644 index 8be8b68b..00000000 --- a/t/data/st_api_lims_new/st/samples/1093824.xml +++ /dev/null @@ -1,209 +0,0 @@ - - - 1093824 - SS127858 - 297 - - - Disease - - - - Subject - - - - Treatment - - - - Time Point - - - - Organism Part - - - - RNAi - - - - Growth Condition - - - - Immunoprecipitate - - - - DNA source - Genomic - - - Geographical region - - - - Compound - - - - Disease State - - - - Cell Type - - - - Developmental Stage - - - - Gender - Not Applicable - - - Volume (µl) - - - - Country of origin - - - - Phenotype - - - - Genotype - - - - Sample storage conditions - - - - Sample type - - - - Concentration determind by - - - - Concentration - - - - Purification method - - - - Sample purified - - - - Sample extraction method - - - - Date of sample extraction - - - - Date of sample collection - - - - Is re-submitted? - - - - Sibling - - - - Cohort - - - - Dose - - - - GC content - Neutral - - - Replicate - - - - Father - - - - Mother - - - - Plate - - - - Ethnicity - - - - Organism - Shigella sonnei - - - Sample Visibility - Hold - - - Sample Description - - - - ENA Sample Accession Number - ERS024597 - - - TAXON ID - 624 - - - Strain - 127858 - - - Common Name - Shigella sonnei - - - Public Name - SS127858 - - - Age - - - - Reference Genome - - - - - - - - - - - - 297 - diff --git a/t/data/st_api_lims_new/st/samples/1093825.xml b/t/data/st_api_lims_new/st/samples/1093825.xml deleted file mode 100644 index 77841f24..00000000 --- a/t/data/st_api_lims_new/st/samples/1093825.xml +++ /dev/null @@ -1,209 +0,0 @@ - - - 1093825 - SS128220 - 297 - - - Disease - - - - Subject - - - - Treatment - - - - Time Point - - - - Organism Part - - - - RNAi - - - - Growth Condition - - - - Immunoprecipitate - - - - DNA source - Genomic - - - Geographical region - - - - Compound - - - - Disease State - - - - Cell Type - - - - Developmental Stage - - - - Gender - Not Applicable - - - Volume (µl) - - - - Country of origin - - - - Phenotype - - - - Genotype - - - - Sample storage conditions - - - - Sample type - - - - Concentration determind by - - - - Concentration - - - - Purification method - - - - Sample purified - - - - Sample extraction method - - - - Date of sample extraction - - - - Date of sample collection - - - - Is re-submitted? - - - - Sibling - - - - Cohort - - - - Dose - - - - GC content - Neutral - - - Replicate - - - - Father - - - - Mother - - - - Plate - - - - Ethnicity - - - - Organism - Shigella sonnei - - - Sample Visibility - Hold - - - Sample Description - - - - ENA Sample Accession Number - ERS024598 - - - TAXON ID - 624 - - - Strain - 128220 - - - Common Name - Shigella sonnei - - - Public Name - SS128220 - - - Age - - - - Reference Genome - - - - - - - - - - - - 297 - diff --git a/t/data/st_api_lims_new/st/samples/1093826.xml b/t/data/st_api_lims_new/st/samples/1093826.xml deleted file mode 100644 index 4c787d8d..00000000 --- a/t/data/st_api_lims_new/st/samples/1093826.xml +++ /dev/null @@ -1,209 +0,0 @@ - - - 1093826 - SS128716 - 297 - - - Disease - - - - Subject - - - - Treatment - - - - Time Point - - - - Organism Part - - - - RNAi - - - - Growth Condition - - - - Immunoprecipitate - - - - DNA source - Genomic - - - Geographical region - - - - Compound - - - - Disease State - - - - Cell Type - - - - Developmental Stage - - - - Gender - Not Applicable - - - Volume (µl) - - - - Country of origin - - - - Phenotype - - - - Genotype - - - - Sample storage conditions - - - - Sample type - - - - Concentration determind by - - - - Concentration - - - - Purification method - - - - Sample purified - - - - Sample extraction method - - - - Date of sample extraction - - - - Date of sample collection - - - - Is re-submitted? - - - - Sibling - - - - Cohort - - - - Dose - - - - GC content - Neutral - - - Replicate - - - - Father - - - - Mother - - - - Plate - - - - Ethnicity - - - - Organism - Shigella sonnei - - - Sample Visibility - Hold - - - Sample Description - - - - ENA Sample Accession Number - ERS024599 - - - TAXON ID - 624 - - - Strain - 128716 - - - Common Name - Shigella sonnei - - - Public Name - SS128716 - - - Age - - - - Reference Genome - - - - - - - - - - - - 297 - diff --git a/t/data/st_api_lims_new/st/samples/1093827.xml b/t/data/st_api_lims_new/st/samples/1093827.xml deleted file mode 100644 index fe1ff621..00000000 --- a/t/data/st_api_lims_new/st/samples/1093827.xml +++ /dev/null @@ -1,209 +0,0 @@ - - - 1093827 - SS129764 - 297 - - - Disease - - - - Subject - - - - Treatment - - - - Time Point - - - - Organism Part - - - - RNAi - - - - Growth Condition - - - - Immunoprecipitate - - - - DNA source - Genomic - - - Geographical region - - - - Compound - - - - Disease State - - - - Cell Type - - - - Developmental Stage - - - - Gender - Not Applicable - - - Volume (µl) - - - - Country of origin - - - - Phenotype - - - - Genotype - - - - Sample storage conditions - - - - Sample type - - - - Concentration determind by - - - - Concentration - - - - Purification method - - - - Sample purified - - - - Sample extraction method - - - - Date of sample extraction - - - - Date of sample collection - - - - Is re-submitted? - - - - Sibling - - - - Cohort - - - - Dose - - - - GC content - Neutral - - - Replicate - - - - Father - - - - Mother - - - - Plate - - - - Ethnicity - - - - Organism - Shigella sonnei - - - Sample Visibility - Hold - - - Sample Description - - - - ENA Sample Accession Number - ERS024600 - - - TAXON ID - 624 - - - Strain - 129764 - - - Common Name - Shigella sonnei - - - Public Name - SS129764 - - - Age - - - - Reference Genome - - - - - - - - - - - - 297 - diff --git a/t/data/st_api_lims_new/st/samples/1093828.xml b/t/data/st_api_lims_new/st/samples/1093828.xml deleted file mode 100644 index f809c8eb..00000000 --- a/t/data/st_api_lims_new/st/samples/1093828.xml +++ /dev/null @@ -1,209 +0,0 @@ - - - 1093828 - SS130327 - 297 - - - Disease - - - - Subject - - - - Treatment - - - - Time Point - - - - Organism Part - - - - RNAi - - - - Growth Condition - - - - Immunoprecipitate - - - - DNA source - Genomic - - - Geographical region - - - - Compound - - - - Disease State - - - - Cell Type - - - - Developmental Stage - - - - Gender - Not Applicable - - - Volume (µl) - - - - Country of origin - - - - Phenotype - - - - Genotype - - - - Sample storage conditions - - - - Sample type - - - - Concentration determind by - - - - Concentration - - - - Purification method - - - - Sample purified - - - - Sample extraction method - - - - Date of sample extraction - - - - Date of sample collection - - - - Is re-submitted? - - - - Sibling - - - - Cohort - - - - Dose - - - - GC content - Neutral - - - Replicate - - - - Father - - - - Mother - - - - Plate - - - - Ethnicity - - - - Organism - Shigella sonnei - - - Sample Visibility - Hold - - - Sample Description - - - - ENA Sample Accession Number - ERS024601 - - - TAXON ID - 624 - - - Strain - 130327 - - - Common Name - Shigella sonnei - - - Public Name - SS130327 - - - Age - - - - Reference Genome - - - - - - - - - - - - 297 - diff --git a/t/data/st_api_lims_new/st/samples/1093829.xml b/t/data/st_api_lims_new/st/samples/1093829.xml deleted file mode 100644 index 6ad60bdf..00000000 --- a/t/data/st_api_lims_new/st/samples/1093829.xml +++ /dev/null @@ -1,209 +0,0 @@ - - - 1093829 - SS131636 - 297 - - - Disease - - - - Subject - - - - Treatment - - - - Time Point - - - - Organism Part - - - - RNAi - - - - Growth Condition - - - - Immunoprecipitate - - - - DNA source - Genomic - - - Geographical region - - - - Compound - - - - Disease State - - - - Cell Type - - - - Developmental Stage - - - - Gender - Not Applicable - - - Volume (µl) - - - - Country of origin - - - - Phenotype - - - - Genotype - - - - Sample storage conditions - - - - Sample type - - - - Concentration determind by - - - - Concentration - - - - Purification method - - - - Sample purified - - - - Sample extraction method - - - - Date of sample extraction - - - - Date of sample collection - - - - Is re-submitted? - - - - Sibling - - - - Cohort - - - - Dose - - - - GC content - Neutral - - - Replicate - - - - Father - - - - Mother - - - - Plate - - - - Ethnicity - - - - Organism - Shigella sonnei - - - Sample Visibility - Hold - - - Sample Description - - - - ENA Sample Accession Number - ERS024602 - - - TAXON ID - 624 - - - Strain - 131636 - - - Common Name - Shigella sonnei - - - Public Name - SS131636 - - - Age - - - - Reference Genome - - - - - - - - - - - - 297 - diff --git a/t/data/st_api_lims_new/st/samples/11036.xml b/t/data/st_api_lims_new/st/samples/11036.xml deleted file mode 100644 index a1808557..00000000 --- a/t/data/st_api_lims_new/st/samples/11036.xml +++ /dev/null @@ -1,207 +0,0 @@ - - - 11036 - Keith1 - 440 - false - - - Phenotype - - - - Sample purified - - - - TAXON ID - 90370 - - - Country of origin - - - - Treatment - - - - Time Point - - - - Date of sample extraction - - - - Sample Description - TraDIS library - - - ENA Sample Accession Number - ERS003242 - - - Common Name - Salmonella enterica subsp. enterica serovar Typhi - - - Gender - - - - Mother - - - - Ethnicity - - - - Compound - - - - Cell Type - - - - Age - - - - Genotype - - - - Volume (µl) - - - - Dose - - - - Organism Part - - - - Growth Condition - - - - Concentration - - - - Public Name - Ctrl1 - - - Subject - - - - RNAi - - - - Concentration determind by - - - - Is re-submitted? - - - - DNA source - - - - Sample extraction method - - - - Disease - - - - Sibling - - - - Strain - CVD908-htrA - - - Cohort - - - - Immunoprecipitate - - - - Disease State - - - - Sample storage conditions - - - - Sample type - - - - Date of sample collection - - - - Developmental Stage - - - - Purification method - - - - Sample Visibility - Hold - - - GC content - neutral - - - Father - - - - Plate - - - - Geographical region - - - - Replicate - - - - Organism - Salmonella typhi - - - Reference Genome - - - - - - - - - 440 - diff --git a/t/data/st_api_lims_new/st/samples/1118234.xml b/t/data/st_api_lims_new/st/samples/1118234.xml deleted file mode 100644 index 16830c7a..00000000 --- a/t/data/st_api_lims_new/st/samples/1118234.xml +++ /dev/null @@ -1,210 +0,0 @@ - - - 1118234 - SN27041 - 664 - false - - - Organism - Streptococcus pneumoniae - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - SN27041 - - - Common Name - Streptococcus pneumoniae - - - Strain - - - - TAXON ID - 1313 - - - ENA Sample Accession Number - ERS069155 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 664 - diff --git a/t/data/st_api_lims_new/st/samples/1118235.xml b/t/data/st_api_lims_new/st/samples/1118235.xml deleted file mode 100644 index 744a4c8c..00000000 --- a/t/data/st_api_lims_new/st/samples/1118235.xml +++ /dev/null @@ -1,210 +0,0 @@ - - - 1118235 - SN27071 - 664 - false - - - Organism - Streptococcus pneumoniae - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - SN27071 - - - Common Name - Streptococcus pneumoniae - - - Strain - - - - TAXON ID - 1313 - - - ENA Sample Accession Number - ERS069156 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 664 - diff --git a/t/data/st_api_lims_new/st/samples/1118236.xml b/t/data/st_api_lims_new/st/samples/1118236.xml deleted file mode 100644 index bb44ed67..00000000 --- a/t/data/st_api_lims_new/st/samples/1118236.xml +++ /dev/null @@ -1,210 +0,0 @@ - - - 1118236 - SN27072 - 664 - false - - - Organism - Streptococcus pneumoniae - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - SN27072 - - - Common Name - Streptococcus pneumoniae - - - Strain - - - - TAXON ID - 1313 - - - ENA Sample Accession Number - ERS069157 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 664 - diff --git a/t/data/st_api_lims_new/st/samples/1118237.xml b/t/data/st_api_lims_new/st/samples/1118237.xml deleted file mode 100644 index a50ac9f7..00000000 --- a/t/data/st_api_lims_new/st/samples/1118237.xml +++ /dev/null @@ -1,210 +0,0 @@ - - - 1118237 - SN27110 - 664 - false - - - Organism - Streptococcus pneumoniae - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - SN27110 - - - Common Name - Streptococcus pneumoniae - - - Strain - - - - TAXON ID - 1313 - - - ENA Sample Accession Number - ERS069158 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 664 - diff --git a/t/data/st_api_lims_new/st/samples/1118238.xml b/t/data/st_api_lims_new/st/samples/1118238.xml deleted file mode 100644 index e2d4113f..00000000 --- a/t/data/st_api_lims_new/st/samples/1118238.xml +++ /dev/null @@ -1,210 +0,0 @@ - - - 1118238 - SN27111 - 664 - false - - - Organism - Streptococcus pneumoniae - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - SN27111 - - - Common Name - Streptococcus pneumoniae - - - Strain - - - - TAXON ID - 1313 - - - ENA Sample Accession Number - ERS069159 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 664 - diff --git a/t/data/st_api_lims_new/st/samples/1118239.xml b/t/data/st_api_lims_new/st/samples/1118239.xml deleted file mode 100644 index 10548c31..00000000 --- a/t/data/st_api_lims_new/st/samples/1118239.xml +++ /dev/null @@ -1,210 +0,0 @@ - - - 1118239 - SN27402 - 664 - false - - - Organism - Streptococcus pneumoniae - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - SN27402 - - - Common Name - Streptococcus pneumoniae - - - Strain - - - - TAXON ID - 1313 - - - ENA Sample Accession Number - ERS069160 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 664 - diff --git a/t/data/st_api_lims_new/st/samples/1118240.xml b/t/data/st_api_lims_new/st/samples/1118240.xml deleted file mode 100644 index 73f0dffd..00000000 --- a/t/data/st_api_lims_new/st/samples/1118240.xml +++ /dev/null @@ -1,210 +0,0 @@ - - - 1118240 - SN27457 - 664 - false - - - Organism - Streptococcus pneumoniae - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - SN27457 - - - Common Name - Streptococcus pneumoniae - - - Strain - - - - TAXON ID - 1313 - - - ENA Sample Accession Number - ERS069161 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 664 - diff --git a/t/data/st_api_lims_new/st/samples/1118241.xml b/t/data/st_api_lims_new/st/samples/1118241.xml deleted file mode 100644 index 0f4a8b90..00000000 --- a/t/data/st_api_lims_new/st/samples/1118241.xml +++ /dev/null @@ -1,210 +0,0 @@ - - - 1118241 - SN27467 - 664 - false - - - Organism - Streptococcus pneumoniae - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - SN27467 - - - Common Name - Streptococcus pneumoniae - - - Strain - - - - TAXON ID - 1313 - - - ENA Sample Accession Number - ERS069162 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 664 - diff --git a/t/data/st_api_lims_new/st/samples/1118242.xml b/t/data/st_api_lims_new/st/samples/1118242.xml deleted file mode 100644 index 379e91df..00000000 --- a/t/data/st_api_lims_new/st/samples/1118242.xml +++ /dev/null @@ -1,210 +0,0 @@ - - - 1118242 - SN27518 - 664 - false - - - Organism - Streptococcus pneumoniae - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - SN27518 - - - Common Name - Streptococcus pneumoniae - - - Strain - - - - TAXON ID - 1313 - - - ENA Sample Accession Number - ERS069163 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 664 - diff --git a/t/data/st_api_lims_new/st/samples/1118243.xml b/t/data/st_api_lims_new/st/samples/1118243.xml deleted file mode 100644 index f51de24e..00000000 --- a/t/data/st_api_lims_new/st/samples/1118243.xml +++ /dev/null @@ -1,210 +0,0 @@ - - - 1118243 - SN27556 - 664 - false - - - Organism - Streptococcus pneumoniae - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - SN27556 - - - Common Name - Streptococcus pneumoniae - - - Strain - - - - TAXON ID - 1313 - - - ENA Sample Accession Number - ERS069164 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 664 - diff --git a/t/data/st_api_lims_new/st/samples/1118244.xml b/t/data/st_api_lims_new/st/samples/1118244.xml deleted file mode 100644 index 9cdda408..00000000 --- a/t/data/st_api_lims_new/st/samples/1118244.xml +++ /dev/null @@ -1,210 +0,0 @@ - - - 1118244 - SN27673 - 664 - false - - - Organism - Streptococcus pneumoniae - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - SN27673 - - - Common Name - Streptococcus pneumoniae - - - Strain - - - - TAXON ID - 1313 - - - ENA Sample Accession Number - ERS069165 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 664 - diff --git a/t/data/st_api_lims_new/st/samples/1118245.xml b/t/data/st_api_lims_new/st/samples/1118245.xml deleted file mode 100644 index 0a8686da..00000000 --- a/t/data/st_api_lims_new/st/samples/1118245.xml +++ /dev/null @@ -1,210 +0,0 @@ - - - 1118245 - SN27684 - 664 - false - - - Organism - Streptococcus pneumoniae - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - SN27684 - - - Common Name - Streptococcus pneumoniae - - - Strain - - - - TAXON ID - 1313 - - - ENA Sample Accession Number - ERS069166 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 664 - diff --git a/t/data/st_api_lims_new/st/samples/1118246.xml b/t/data/st_api_lims_new/st/samples/1118246.xml deleted file mode 100644 index c9860119..00000000 --- a/t/data/st_api_lims_new/st/samples/1118246.xml +++ /dev/null @@ -1,210 +0,0 @@ - - - 1118246 - SN27815 - 664 - false - - - Organism - Streptococcus pneumoniae - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - SN27815 - - - Common Name - Streptococcus pneumoniae - - - Strain - - - - TAXON ID - 1313 - - - ENA Sample Accession Number - ERS069167 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 664 - diff --git a/t/data/st_api_lims_new/st/samples/1118247.xml b/t/data/st_api_lims_new/st/samples/1118247.xml deleted file mode 100644 index 27479b07..00000000 --- a/t/data/st_api_lims_new/st/samples/1118247.xml +++ /dev/null @@ -1,210 +0,0 @@ - - - 1118247 - SN27818 - 664 - false - - - Organism - Streptococcus pneumoniae - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - SN27818 - - - Common Name - Streptococcus pneumoniae - - - Strain - - - - TAXON ID - 1313 - - - ENA Sample Accession Number - ERS069168 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 664 - diff --git a/t/data/st_api_lims_new/st/samples/1118248.xml b/t/data/st_api_lims_new/st/samples/1118248.xml deleted file mode 100644 index 4096dcab..00000000 --- a/t/data/st_api_lims_new/st/samples/1118248.xml +++ /dev/null @@ -1,210 +0,0 @@ - - - 1118248 - SN27857 - 664 - false - - - Organism - Streptococcus pneumoniae - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - SN27857 - - - Common Name - Streptococcus pneumoniae - - - Strain - - - - TAXON ID - 1313 - - - ENA Sample Accession Number - ERS069169 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 664 - diff --git a/t/data/st_api_lims_new/st/samples/1118249.xml b/t/data/st_api_lims_new/st/samples/1118249.xml deleted file mode 100644 index bd409151..00000000 --- a/t/data/st_api_lims_new/st/samples/1118249.xml +++ /dev/null @@ -1,210 +0,0 @@ - - - 1118249 - SN27903 - 664 - false - - - Organism - Streptococcus pneumoniae - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - SN27903 - - - Common Name - Streptococcus pneumoniae - - - Strain - - - - TAXON ID - 1313 - - - ENA Sample Accession Number - ERS069170 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 664 - diff --git a/t/data/st_api_lims_new/st/samples/1118250.xml b/t/data/st_api_lims_new/st/samples/1118250.xml deleted file mode 100644 index 19d240db..00000000 --- a/t/data/st_api_lims_new/st/samples/1118250.xml +++ /dev/null @@ -1,210 +0,0 @@ - - - 1118250 - SN28019 - 664 - false - - - Organism - Streptococcus pneumoniae - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - SN28019 - - - Common Name - Streptococcus pneumoniae - - - Strain - - - - TAXON ID - 1313 - - - ENA Sample Accession Number - ERS069171 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 664 - diff --git a/t/data/st_api_lims_new/st/samples/1118251.xml b/t/data/st_api_lims_new/st/samples/1118251.xml deleted file mode 100644 index 1b8a25c1..00000000 --- a/t/data/st_api_lims_new/st/samples/1118251.xml +++ /dev/null @@ -1,210 +0,0 @@ - - - 1118251 - SN28054 - 664 - false - - - Organism - Streptococcus pneumoniae - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - SN28054 - - - Common Name - Streptococcus pneumoniae - - - Strain - - - - TAXON ID - 1313 - - - ENA Sample Accession Number - ERS069172 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 664 - diff --git a/t/data/st_api_lims_new/st/samples/1118252.xml b/t/data/st_api_lims_new/st/samples/1118252.xml deleted file mode 100644 index 4f75495a..00000000 --- a/t/data/st_api_lims_new/st/samples/1118252.xml +++ /dev/null @@ -1,210 +0,0 @@ - - - 1118252 - SN28129 - 664 - false - - - Organism - Streptococcus pneumoniae - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - SN28129 - - - Common Name - Streptococcus pneumoniae - - - Strain - - - - TAXON ID - 1313 - - - ENA Sample Accession Number - ERS069173 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 664 - diff --git a/t/data/st_api_lims_new/st/samples/1118253.xml b/t/data/st_api_lims_new/st/samples/1118253.xml deleted file mode 100644 index 48b1f939..00000000 --- a/t/data/st_api_lims_new/st/samples/1118253.xml +++ /dev/null @@ -1,210 +0,0 @@ - - - 1118253 - SN28162 - 664 - false - - - Organism - Streptococcus pneumoniae - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - SN28162 - - - Common Name - Streptococcus pneumoniae - - - Strain - - - - TAXON ID - 1313 - - - ENA Sample Accession Number - ERS069174 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 664 - diff --git a/t/data/st_api_lims_new/st/samples/1118254.xml b/t/data/st_api_lims_new/st/samples/1118254.xml deleted file mode 100644 index b9f2351b..00000000 --- a/t/data/st_api_lims_new/st/samples/1118254.xml +++ /dev/null @@ -1,210 +0,0 @@ - - - 1118254 - SN28177 - 664 - false - - - Organism - Streptococcus pneumoniae - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - SN28177 - - - Common Name - Streptococcus pneumoniae - - - Strain - - - - TAXON ID - 1313 - - - ENA Sample Accession Number - ERS069175 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 664 - diff --git a/t/data/st_api_lims_new/st/samples/1118255.xml b/t/data/st_api_lims_new/st/samples/1118255.xml deleted file mode 100644 index 3baa8e28..00000000 --- a/t/data/st_api_lims_new/st/samples/1118255.xml +++ /dev/null @@ -1,210 +0,0 @@ - - - 1118255 - SN28222 - 664 - false - - - Organism - Streptococcus pneumoniae - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - SN28222 - - - Common Name - Streptococcus pneumoniae - - - Strain - - - - TAXON ID - 1313 - - - ENA Sample Accession Number - ERS069176 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 664 - diff --git a/t/data/st_api_lims_new/st/samples/1118256.xml b/t/data/st_api_lims_new/st/samples/1118256.xml deleted file mode 100644 index a1ac3c2b..00000000 --- a/t/data/st_api_lims_new/st/samples/1118256.xml +++ /dev/null @@ -1,210 +0,0 @@ - - - 1118256 - SN28230 - 664 - false - - - Organism - Streptococcus pneumoniae - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - SN28230 - - - Common Name - Streptococcus pneumoniae - - - Strain - - - - TAXON ID - 1313 - - - ENA Sample Accession Number - ERS069177 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 664 - diff --git a/t/data/st_api_lims_new/st/samples/1118257.xml b/t/data/st_api_lims_new/st/samples/1118257.xml deleted file mode 100644 index ac333064..00000000 --- a/t/data/st_api_lims_new/st/samples/1118257.xml +++ /dev/null @@ -1,210 +0,0 @@ - - - 1118257 - SN28293 - 664 - false - - - Organism - Streptococcus pneumoniae - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - SN28293 - - - Common Name - Streptococcus pneumoniae - - - Strain - - - - TAXON ID - 1313 - - - ENA Sample Accession Number - ERS069178 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 664 - diff --git a/t/data/st_api_lims_new/st/samples/1118258.xml b/t/data/st_api_lims_new/st/samples/1118258.xml deleted file mode 100644 index b48aebed..00000000 --- a/t/data/st_api_lims_new/st/samples/1118258.xml +++ /dev/null @@ -1,210 +0,0 @@ - - - 1118258 - SN28419 - 664 - false - - - Organism - Streptococcus pneumoniae - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - SN28419 - - - Common Name - Streptococcus pneumoniae - - - Strain - - - - TAXON ID - 1313 - - - ENA Sample Accession Number - ERS069179 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 664 - diff --git a/t/data/st_api_lims_new/st/samples/1118259.xml b/t/data/st_api_lims_new/st/samples/1118259.xml deleted file mode 100644 index ca8b472b..00000000 --- a/t/data/st_api_lims_new/st/samples/1118259.xml +++ /dev/null @@ -1,210 +0,0 @@ - - - 1118259 - SN28421 - 664 - false - - - Organism - Streptococcus pneumoniae - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - SN28421 - - - Common Name - Streptococcus pneumoniae - - - Strain - - - - TAXON ID - 1313 - - - ENA Sample Accession Number - ERS069180 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 664 - diff --git a/t/data/st_api_lims_new/st/samples/1118260.xml b/t/data/st_api_lims_new/st/samples/1118260.xml deleted file mode 100644 index 28e7b1ce..00000000 --- a/t/data/st_api_lims_new/st/samples/1118260.xml +++ /dev/null @@ -1,210 +0,0 @@ - - - 1118260 - SN28481 - 664 - false - - - Organism - Streptococcus pneumoniae - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - SN28481 - - - Common Name - Streptococcus pneumoniae - - - Strain - - - - TAXON ID - 1313 - - - ENA Sample Accession Number - ERS069181 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 664 - diff --git a/t/data/st_api_lims_new/st/samples/1118261.xml b/t/data/st_api_lims_new/st/samples/1118261.xml deleted file mode 100644 index fe186773..00000000 --- a/t/data/st_api_lims_new/st/samples/1118261.xml +++ /dev/null @@ -1,210 +0,0 @@ - - - 1118261 - SN28493 - 664 - false - - - Organism - Streptococcus pneumoniae - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - SN28493 - - - Common Name - Streptococcus pneumoniae - - - Strain - - - - TAXON ID - 1313 - - - ENA Sample Accession Number - ERS069182 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 664 - diff --git a/t/data/st_api_lims_new/st/samples/1118262.xml b/t/data/st_api_lims_new/st/samples/1118262.xml deleted file mode 100644 index c5ff21ba..00000000 --- a/t/data/st_api_lims_new/st/samples/1118262.xml +++ /dev/null @@ -1,210 +0,0 @@ - - - 1118262 - SN28582 - 664 - false - - - Organism - Streptococcus pneumoniae - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - SN28582 - - - Common Name - Streptococcus pneumoniae - - - Strain - - - - TAXON ID - 1313 - - - ENA Sample Accession Number - ERS069183 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 664 - diff --git a/t/data/st_api_lims_new/st/samples/1118263.xml b/t/data/st_api_lims_new/st/samples/1118263.xml deleted file mode 100644 index 0c65a90f..00000000 --- a/t/data/st_api_lims_new/st/samples/1118263.xml +++ /dev/null @@ -1,210 +0,0 @@ - - - 1118263 - SN28685 - 664 - false - - - Organism - Streptococcus pneumoniae - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - SN28685 - - - Common Name - Streptococcus pneumoniae - - - Strain - - - - TAXON ID - 1313 - - - ENA Sample Accession Number - ERS069184 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 664 - diff --git a/t/data/st_api_lims_new/st/samples/1118264.xml b/t/data/st_api_lims_new/st/samples/1118264.xml deleted file mode 100644 index 1659efda..00000000 --- a/t/data/st_api_lims_new/st/samples/1118264.xml +++ /dev/null @@ -1,210 +0,0 @@ - - - 1118264 - SN28699 - 664 - false - - - Organism - Streptococcus pneumoniae - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - SN28699 - - - Common Name - Streptococcus pneumoniae - - - Strain - - - - TAXON ID - 1313 - - - ENA Sample Accession Number - ERS069185 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 664 - diff --git a/t/data/st_api_lims_new/st/samples/1118265.xml b/t/data/st_api_lims_new/st/samples/1118265.xml deleted file mode 100644 index 511c5563..00000000 --- a/t/data/st_api_lims_new/st/samples/1118265.xml +++ /dev/null @@ -1,210 +0,0 @@ - - - 1118265 - SN28722 - 664 - false - - - Organism - Streptococcus pneumoniae - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - SN28722 - - - Common Name - Streptococcus pneumoniae - - - Strain - - - - TAXON ID - 1313 - - - ENA Sample Accession Number - ERS069186 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 664 - diff --git a/t/data/st_api_lims_new/st/samples/1118266.xml b/t/data/st_api_lims_new/st/samples/1118266.xml deleted file mode 100644 index 08815496..00000000 --- a/t/data/st_api_lims_new/st/samples/1118266.xml +++ /dev/null @@ -1,210 +0,0 @@ - - - 1118266 - SN28777 - 664 - false - - - Organism - Streptococcus pneumoniae - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - SN28777 - - - Common Name - Streptococcus pneumoniae - - - Strain - - - - TAXON ID - 1313 - - - ENA Sample Accession Number - ERS069187 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 664 - diff --git a/t/data/st_api_lims_new/st/samples/1118267.xml b/t/data/st_api_lims_new/st/samples/1118267.xml deleted file mode 100644 index 13a1a069..00000000 --- a/t/data/st_api_lims_new/st/samples/1118267.xml +++ /dev/null @@ -1,210 +0,0 @@ - - - 1118267 - SN28796 - 664 - false - - - Organism - Streptococcus pneumoniae - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - SN28796 - - - Common Name - Streptococcus pneumoniae - - - Strain - - - - TAXON ID - 1313 - - - ENA Sample Accession Number - ERS069188 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 664 - diff --git a/t/data/st_api_lims_new/st/samples/1118268.xml b/t/data/st_api_lims_new/st/samples/1118268.xml deleted file mode 100644 index f9165f2d..00000000 --- a/t/data/st_api_lims_new/st/samples/1118268.xml +++ /dev/null @@ -1,210 +0,0 @@ - - - 1118268 - SN28797 - 664 - false - - - Organism - Streptococcus pneumoniae - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - SN28797 - - - Common Name - Streptococcus pneumoniae - - - Strain - - - - TAXON ID - 1313 - - - ENA Sample Accession Number - ERS069189 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 664 - diff --git a/t/data/st_api_lims_new/st/samples/1118269.xml b/t/data/st_api_lims_new/st/samples/1118269.xml deleted file mode 100644 index 7785c3a8..00000000 --- a/t/data/st_api_lims_new/st/samples/1118269.xml +++ /dev/null @@ -1,210 +0,0 @@ - - - 1118269 - SN28854 - 664 - false - - - Organism - Streptococcus pneumoniae - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - SN28854 - - - Common Name - Streptococcus pneumoniae - - - Strain - - - - TAXON ID - 1313 - - - ENA Sample Accession Number - ERS069190 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 664 - diff --git a/t/data/st_api_lims_new/st/samples/1118270.xml b/t/data/st_api_lims_new/st/samples/1118270.xml deleted file mode 100644 index f71cc853..00000000 --- a/t/data/st_api_lims_new/st/samples/1118270.xml +++ /dev/null @@ -1,210 +0,0 @@ - - - 1118270 - SN28890 - 664 - false - - - Organism - Streptococcus pneumoniae - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - SN28890 - - - Common Name - Streptococcus pneumoniae - - - Strain - - - - TAXON ID - 1313 - - - ENA Sample Accession Number - ERS069191 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 664 - diff --git a/t/data/st_api_lims_new/st/samples/1118271.xml b/t/data/st_api_lims_new/st/samples/1118271.xml deleted file mode 100644 index 901a56ae..00000000 --- a/t/data/st_api_lims_new/st/samples/1118271.xml +++ /dev/null @@ -1,210 +0,0 @@ - - - 1118271 - SN28905 - 664 - false - - - Organism - Streptococcus pneumoniae - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - SN28905 - - - Common Name - Streptococcus pneumoniae - - - Strain - - - - TAXON ID - 1313 - - - ENA Sample Accession Number - ERS069192 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 664 - diff --git a/t/data/st_api_lims_new/st/samples/1118272.xml b/t/data/st_api_lims_new/st/samples/1118272.xml deleted file mode 100644 index 69495d4e..00000000 --- a/t/data/st_api_lims_new/st/samples/1118272.xml +++ /dev/null @@ -1,210 +0,0 @@ - - - 1118272 - SN28918 - 664 - false - - - Organism - Streptococcus pneumoniae - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - SN28918 - - - Common Name - Streptococcus pneumoniae - - - Strain - - - - TAXON ID - 1313 - - - ENA Sample Accession Number - ERS069193 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 664 - diff --git a/t/data/st_api_lims_new/st/samples/1118273.xml b/t/data/st_api_lims_new/st/samples/1118273.xml deleted file mode 100644 index 72ea50f4..00000000 --- a/t/data/st_api_lims_new/st/samples/1118273.xml +++ /dev/null @@ -1,210 +0,0 @@ - - - 1118273 - SN28923 - 664 - false - - - Organism - Streptococcus pneumoniae - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - SN28923 - - - Common Name - Streptococcus pneumoniae - - - Strain - - - - TAXON ID - 1313 - - - ENA Sample Accession Number - ERS069194 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 664 - diff --git a/t/data/st_api_lims_new/st/samples/1118274.xml b/t/data/st_api_lims_new/st/samples/1118274.xml deleted file mode 100644 index 47276387..00000000 --- a/t/data/st_api_lims_new/st/samples/1118274.xml +++ /dev/null @@ -1,210 +0,0 @@ - - - 1118274 - SN28974 - 664 - false - - - Organism - Streptococcus pneumoniae - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - SN28974 - - - Common Name - Streptococcus pneumoniae - - - Strain - - - - TAXON ID - 1313 - - - ENA Sample Accession Number - ERS069195 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 664 - diff --git a/t/data/st_api_lims_new/st/samples/1118275.xml b/t/data/st_api_lims_new/st/samples/1118275.xml deleted file mode 100644 index 3ccae32d..00000000 --- a/t/data/st_api_lims_new/st/samples/1118275.xml +++ /dev/null @@ -1,210 +0,0 @@ - - - 1118275 - SN28994 - 664 - false - - - Organism - Streptococcus pneumoniae - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - SN28994 - - - Common Name - Streptococcus pneumoniae - - - Strain - - - - TAXON ID - 1313 - - - ENA Sample Accession Number - ERS069196 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 664 - diff --git a/t/data/st_api_lims_new/st/samples/1118276.xml b/t/data/st_api_lims_new/st/samples/1118276.xml deleted file mode 100644 index 4f697b92..00000000 --- a/t/data/st_api_lims_new/st/samples/1118276.xml +++ /dev/null @@ -1,210 +0,0 @@ - - - 1118276 - SN29738 - 664 - false - - - Organism - Streptococcus pneumoniae - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - SN29738 - - - Common Name - Streptococcus pneumoniae - - - Strain - - - - TAXON ID - 1313 - - - ENA Sample Accession Number - ERS069197 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 664 - diff --git a/t/data/st_api_lims_new/st/samples/1118277.xml b/t/data/st_api_lims_new/st/samples/1118277.xml deleted file mode 100644 index 06d79fc5..00000000 --- a/t/data/st_api_lims_new/st/samples/1118277.xml +++ /dev/null @@ -1,210 +0,0 @@ - - - 1118277 - SN29754 - 664 - false - - - Organism - Streptococcus pneumoniae - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - SN29754 - - - Common Name - Streptococcus pneumoniae - - - Strain - - - - TAXON ID - 1313 - - - ENA Sample Accession Number - ERS069198 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 664 - diff --git a/t/data/st_api_lims_new/st/samples/1118278.xml b/t/data/st_api_lims_new/st/samples/1118278.xml deleted file mode 100644 index 8bcd8f2a..00000000 --- a/t/data/st_api_lims_new/st/samples/1118278.xml +++ /dev/null @@ -1,210 +0,0 @@ - - - 1118278 - SN29770 - 664 - false - - - Organism - Streptococcus pneumoniae - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - SN29770 - - - Common Name - Streptococcus pneumoniae - - - Strain - - - - TAXON ID - 1313 - - - ENA Sample Accession Number - ERS069199 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 664 - diff --git a/t/data/st_api_lims_new/st/samples/1118279.xml b/t/data/st_api_lims_new/st/samples/1118279.xml deleted file mode 100644 index 44db1631..00000000 --- a/t/data/st_api_lims_new/st/samples/1118279.xml +++ /dev/null @@ -1,210 +0,0 @@ - - - 1118279 - SN29791 - 664 - false - - - Organism - Streptococcus pneumoniae - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - SN29791 - - - Common Name - Streptococcus pneumoniae - - - Strain - - - - TAXON ID - 1313 - - - ENA Sample Accession Number - ERS069200 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 664 - diff --git a/t/data/st_api_lims_new/st/samples/1118280.xml b/t/data/st_api_lims_new/st/samples/1118280.xml deleted file mode 100644 index f9183a7e..00000000 --- a/t/data/st_api_lims_new/st/samples/1118280.xml +++ /dev/null @@ -1,210 +0,0 @@ - - - 1118280 - SN29798 - 664 - false - - - Organism - Streptococcus pneumoniae - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - SN29798 - - - Common Name - Streptococcus pneumoniae - - - Strain - - - - TAXON ID - 1313 - - - ENA Sample Accession Number - ERS069201 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 664 - diff --git a/t/data/st_api_lims_new/st/samples/1118281.xml b/t/data/st_api_lims_new/st/samples/1118281.xml deleted file mode 100644 index 292fdfba..00000000 --- a/t/data/st_api_lims_new/st/samples/1118281.xml +++ /dev/null @@ -1,210 +0,0 @@ - - - 1118281 - SN29801 - 664 - false - - - Organism - Streptococcus pneumoniae - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - SN29801 - - - Common Name - Streptococcus pneumoniae - - - Strain - - - - TAXON ID - 1313 - - - ENA Sample Accession Number - ERS069202 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 664 - diff --git a/t/data/st_api_lims_new/st/samples/1121926.xml b/t/data/st_api_lims_new/st/samples/1121926.xml deleted file mode 100644 index 32c5169c..00000000 --- a/t/data/st_api_lims_new/st/samples/1121926.xml +++ /dev/null @@ -1,208 +0,0 @@ - - - 1121926 - BS_3hrsomuleSm_202790 - 1811 - - - Disease - - - - Subject - - - - Treatment - - - - Time Point - - - - Organism Part - - - - RNAi - - - - Growth Condition - - - - Immunoprecipitate - - - - DNA source - Genomic - - - Geographical region - - - - Compound - - - - Disease State - - - - Cell Type - - - - Developmental Stage - - - - Gender - Mixed - - - Volume (µl) - - - - Country of origin - - - - Phenotype - - - - Genotype - - - - Sample storage conditions - - - - Sample type - - - - Concentration determind by - - - - Concentration - - - - Purification method - - - - Sample purified - - - - Sample extraction method - - - - Date of sample extraction - - - - Date of sample collection - - - - Is re-submitted? - - - - Sibling - - - - Cohort - - - - Dose - - - - GC content - Neutral - - - Replicate - - - - Father - - - - Mother - - - - Plate - - - - Ethnicity - - - - Organism - Schistosoma mansoni - - - Sample Visibility - Hold - - - Sample Description - - - - ENA Sample Accession Number - ERS028649 - - - TAXON ID - 6183 - - - Strain - Puerto Rican - - - Common Name - Schistosoma mansoni - - - Public Name - - - - Age - - - - Reference Genome - Schistosoma_mansoni (20100601) - - - - - - - - - - 1811 - diff --git a/t/data/st_api_lims_new/st/samples/1132331.xml b/t/data/st_api_lims_new/st/samples/1132331.xml deleted file mode 100644 index 932eb61b..00000000 --- a/t/data/st_api_lims_new/st/samples/1132331.xml +++ /dev/null @@ -1,208 +0,0 @@ - - - 1132331 - HiC_H_ON_DCJ - 429 - - - Disease - - - - Subject - - - - Treatment - - - - Time Point - - - - Organism Part - 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- Age - - - - Reference Genome - - - - - - - - - - - 429 - diff --git a/t/data/st_api_lims_new/st/samples/1132333.xml b/t/data/st_api_lims_new/st/samples/1132333.xml deleted file mode 100644 index c9cd4309..00000000 --- a/t/data/st_api_lims_new/st/samples/1132333.xml +++ /dev/null @@ -1,208 +0,0 @@ - - - 1132333 - HiC_H_Dd2 - 429 - - - Disease - - - - Subject - - - - Treatment - - - - Time Point - - - - Organism Part - - - - RNAi - - - - Growth Condition - - - - Immunoprecipitate - - - - DNA source - Genomic - - - Geographical region - - - - Compound - - - - Disease State - - - - Cell Type - - - - Developmental Stage - - - - Gender - Not Applicable - - - Volume (µl) - - - - Country of origin - - - - Phenotype - - - - Genotype - - - - Sample storage conditions - - - - Sample type - - - - Concentration determind by - - - - Concentration - - - - Purification method - - - - Sample purified - - - - Sample extraction method - - - - Date of sample extraction - - - - Date of sample collection - - - - Is re-submitted? - - - - Sibling - - - - Cohort - - - - Dose - - - - GC content - High AT - - - Replicate - - - - Father - - - - Mother - - - - Plate - - - - Ethnicity - - - - Organism - Plasmodium falciparum - - - Sample Visibility - Hold - - - Sample Description - - - - ENA Sample Accession Number - ERS033160 - - - TAXON ID - 5833 - - - Strain - - - - Common Name - Plasmodium falciparum - - - Public Name - - - - Age - - - - Reference Genome - - - - - - - - - - - 429 - diff --git a/t/data/st_api_lims_new/st/samples/1132335.xml b/t/data/st_api_lims_new/st/samples/1132335.xml deleted file mode 100644 index 66cf85fb..00000000 --- a/t/data/st_api_lims_new/st/samples/1132335.xml +++ /dev/null @@ -1,208 +0,0 @@ - - - 1132335 - HiC_H_PQP1 - 429 - - - Disease - - - - Subject - - - - Treatment - - - - Time Point - - - - Organism Part - - - - RNAi - - - - Growth Condition - - - - Immunoprecipitate - - - - DNA source - Genomic - - - Geographical region - - - - Compound - - - - Disease State - - - - Cell Type - - - - Developmental Stage - - - - Gender - Not Applicable - - - Volume (µl) - - - - Country of origin - - - - Phenotype - - - - Genotype - - - - Sample storage conditions - - - - Sample type - - - - Concentration determind by - - - - Concentration - - - - Purification method - - - - Sample purified - - - - Sample extraction method - - - - Date of sample extraction - - - - Date of sample collection - - - - Is re-submitted? - - - - Sibling - - - - Cohort - - - - Dose - - - - GC content - High AT - - - Replicate - - - - Father - - - - Mother - - - - Plate - - - - Ethnicity - - - - Organism - Plasmodium falciparum - - - Sample Visibility - Hold - - - Sample Description - - - - ENA Sample Accession Number - ERS033162 - - - TAXON ID - 5833 - - - Strain - - - - Common Name - Plasmodium falciparum - - - Public Name - - - - Age - - - - Reference Genome - - - - - - - - - - - 429 - diff --git a/t/data/st_api_lims_new/st/samples/1132341.xml b/t/data/st_api_lims_new/st/samples/1132341.xml deleted file mode 100644 index e165913b..00000000 --- a/t/data/st_api_lims_new/st/samples/1132341.xml +++ /dev/null @@ -1,208 +0,0 @@ - - - 1132341 - HiC_H_OFF_DCJ - 429 - - - Disease - - - - Subject - - - - Treatment - - - - Time Point - - - - Organism Part - - - - RNAi - - - - Growth Condition - - - - Immunoprecipitate - - - - DNA source - Genomic - - - Geographical region - - - - Compound - - - - Disease State - - - - Cell Type - - - - Developmental Stage - - - - Gender - Not Applicable - - - Volume (µl) - - - - Country of origin - - - - Phenotype - - - - Genotype - - - - Sample storage conditions - - - - Sample type - - - - Concentration determind by - - - - Concentration - - - - Purification method - - - - Sample purified - - - - Sample extraction method - - - - Date of sample extraction - - - - Date of sample collection - - - - Is re-submitted? - - - - Sibling - - - - Cohort - - - - Dose - - - - GC content - High AT - - - Replicate - - - - Father - - - - Mother - - - - Plate - - - - Ethnicity - - - - Organism - Plasmodium falciparum - - - Sample Visibility - Hold - - - Sample Description - - - - ENA Sample Accession Number - ERS033168 - - - TAXON ID - 5833 - - - Strain - - - - Common Name - Plasmodium falciparum - - - Public Name - - - - Age - - - - Reference Genome - - - - - - - - - - - 429 - diff --git a/t/data/st_api_lims_new/st/samples/1132343.xml b/t/data/st_api_lims_new/st/samples/1132343.xml deleted file mode 100644 index 39c37217..00000000 --- a/t/data/st_api_lims_new/st/samples/1132343.xml +++ /dev/null @@ -1,208 +0,0 @@ - - - 1132343 - HIC_M_B15C2 - 429 - - - Disease - - - - Subject - - - - Treatment - - - - Time Point - - - - Organism Part - - - - RNAi - - - - Growth Condition - - - - Immunoprecipitate - - - - DNA source - Genomic - - - Geographical region - - - - Compound - - - - Disease State - - - - Cell Type - - - - Developmental Stage - - - - Gender - Not Applicable - - - Volume (µl) - - - - Country of origin - - - - Phenotype - - - - Genotype - - - - Sample storage conditions - - - - Sample type - - - - Concentration determind by - - - - Concentration - - - - Purification method - - - - Sample purified - - - - Sample extraction method - - - - Date of sample extraction - - - - Date of sample collection - - - - Is re-submitted? - - - - Sibling - - - - Cohort - - - - Dose - - - - GC content - High AT - - - Replicate - - - - Father - - - - Mother - - - - Plate - - - - Ethnicity - - - - Organism - Plasmodium falciparum - - - Sample Visibility - Hold - - - Sample Description - - - - ENA Sample Accession Number - ERS033170 - - - TAXON ID - 5833 - - - Strain - - - - Common Name - Plasmodium falciparum - - - Public Name - - - - Age - - - - Reference Genome - - - - - - - - - - - 429 - diff --git a/t/data/st_api_lims_new/st/samples/1132345.xml b/t/data/st_api_lims_new/st/samples/1132345.xml deleted file mode 100644 index afa1e422..00000000 --- a/t/data/st_api_lims_new/st/samples/1132345.xml +++ /dev/null @@ -1,208 +0,0 @@ - - - 1132345 - HiC_M_Rev1 - 429 - - - Disease - - - - Subject - - - - Treatment - - - - Time Point - - - - Organism Part - - - - RNAi - - - - Growth Condition - - - - Immunoprecipitate - 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- - 1132347 - HiC_M_3D7 - 429 - - - Disease - - - - Subject - - - - Treatment - - - - Time Point - - - - Organism Part - - - - RNAi - - - - Growth Condition - - - - Immunoprecipitate - - - - DNA source - Genomic - - - Geographical region - - - - Compound - - - - Disease State - - - - Cell Type - - - - Developmental Stage - - - - Gender - Not Applicable - - - Volume (µl) - - - - Country of origin - - - - Phenotype - - - - Genotype - - - - Sample storage conditions - - - - Sample type - - - - Concentration determind by - - - - Concentration - - - - Purification method - - - - Sample purified - - - - Sample extraction method - - - - Date of sample extraction - - - - Date of sample collection - - - - Is re-submitted? - - - - Sibling - - - - Cohort - - - - Dose - - - - GC content - High AT - - - Replicate - - - - Father - - - - Mother - - - - Plate - - - - Ethnicity - - - - Organism - Plasmodium falciparum - - - Sample Visibility - Hold - - - Sample Description - - - - ENA Sample Accession Number - ERS033174 - - - TAXON ID - 5833 - - - Strain - - - - Common Name - Plasmodium falciparum - - - Public Name - - - - Age - - - - Reference Genome - - - - - - - - - - - 429 - diff --git a/t/data/st_api_lims_new/st/samples/1132349.xml b/t/data/st_api_lims_new/st/samples/1132349.xml deleted file mode 100644 index 0c9dabc9..00000000 --- a/t/data/st_api_lims_new/st/samples/1132349.xml +++ /dev/null @@ -1,208 +0,0 @@ - - - 1132349 - HiC_M_ER3D7 - 429 - - - Disease - - - - Subject - - - - Treatment - - - - Time Point - - - - Organism Part - - - - RNAi - - - - Growth Condition - - - - Immunoprecipitate - - - - DNA source - Genomic - - - Geographical region - - - - Compound - - - - Disease State - - - - Cell Type - - - - Developmental Stage - - - - Gender - Not Applicable - - - Volume (µl) - - - - Country of origin - - - - Phenotype - - - - Genotype - - - - Sample storage conditions - - - - Sample type - - - - Concentration determind by - - - - Concentration - - - - Purification method - - - - Sample purified - - - - Sample extraction method - - - - Date of sample extraction - - - - Date of sample collection - - - - Is re-submitted? - - - - Sibling - - - - Cohort - - - - Dose - - - - GC content - High AT - - - Replicate - - - - Father - - - - Mother - - - - Plate - - - - Ethnicity - - - - Organism - Plasmodium falciparum - - - Sample Visibility - Hold - - - Sample Description - - - - ENA Sample Accession Number - ERS033176 - - - TAXON ID - 5833 - - - Strain - - - - Common Name - Plasmodium falciparum - - - Public Name - - - - Age - - - - Reference Genome - - - - - - - - - - - 429 - diff --git a/t/data/st_api_lims_new/st/samples/1132351.xml b/t/data/st_api_lims_new/st/samples/1132351.xml deleted file mode 100644 index 1bfdbf77..00000000 --- a/t/data/st_api_lims_new/st/samples/1132351.xml +++ /dev/null @@ -1,208 +0,0 @@ - - - 1132351 - HiC_H_LT3D7 - 429 - - - Disease - - - - Subject - - - - Treatment - - - - Time Point - - - - Organism Part - - - - RNAi - - - - Growth Condition - - - - Immunoprecipitate - - - - DNA source - Genomic - - - Geographical region - - - - Compound - - - - Disease State - - - - Cell Type - - - - Developmental Stage - - - - Gender - Not Applicable - - - Volume (µl) - - - - Country of origin - - - - Phenotype - - - - Genotype - - - - Sample storage conditions - - - - Sample type - - - - Concentration determind by - - - - Concentration - - - - Purification method - - - - Sample purified - - - - Sample extraction method - - - - Date of sample extraction - - - - Date of sample collection - - - - Is re-submitted? - - - - Sibling - - - - Cohort - - - - Dose - - - - GC content - High AT - - - Replicate - - - - Father - - - - Mother - - - - Plate - - - - Ethnicity - - - - Organism - Plasmodium falciparum - - - Sample Visibility - Hold - - - Sample Description - - - - ENA Sample Accession Number - ERS033178 - - - TAXON ID - 5833 - - - Strain - - - - Common Name - Plasmodium falciparum - - - Public Name - - - - Age - - - - Reference Genome - - - - - - - - - - - 429 - diff --git a/t/data/st_api_lims_new/st/samples/1135847.xml b/t/data/st_api_lims_new/st/samples/1135847.xml deleted file mode 100644 index 84765baa..00000000 --- a/t/data/st_api_lims_new/st/samples/1135847.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135847 - SH0090 - 1826 - false - - - Dose - - - - Disease State - - - - Concentration determind by - - - - Purification method - - - - Sample Visibility - Hold - - - Public Name - IB1644 - - - Gender - Not Applicable - - - Volume (µl) - - - - Developmental Stage - - - - Plate - - - - Ethnicity - - - - Organism - Shigella flexneri - - - Disease - - - - RNAi - - - - Phenotype - - - - Date of sample collection - - - - Is re-submitted? - - - - TAXON ID - 623 - - - Sample type - - - - Sample purified - - - - ENA Sample Accession Number - ERS033304 - - - Strain - IB1644 - - - GC content - Neutral - - - Genotype - - - - Date of sample extraction - - - - Sibling - - - - Mother - - - - Geographical region - - - - Immunoprecipitate - - - - Cell Type - - - - Replicate - - - - Cohort - - - - Age - - - - Sample Description - - - - Common Name - Shigella flexneri - - - Treatment - - - - Time Point - - - - Growth Condition - - - - Compound - - - - Sample storage conditions - - - - Sample extraction method - - - - Subject - - - - Organism Part - - - - Father - - - - Country of origin - - - - Concentration - - - - DNA source - Genomic - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135848.xml b/t/data/st_api_lims_new/st/samples/1135848.xml deleted file mode 100644 index 9ef5391a..00000000 --- a/t/data/st_api_lims_new/st/samples/1135848.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135848 - SH0091 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB1645 - - - Common Name - Shigella flexneri - - - Strain - IB1645 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033305 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135849.xml b/t/data/st_api_lims_new/st/samples/1135849.xml deleted file mode 100644 index 3aa510a7..00000000 --- a/t/data/st_api_lims_new/st/samples/1135849.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135849 - SH0092 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB1646 - - - Common Name - Shigella flexneri - - - Strain - IB1646 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033306 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135850.xml b/t/data/st_api_lims_new/st/samples/1135850.xml deleted file mode 100644 index 9f91cddc..00000000 --- a/t/data/st_api_lims_new/st/samples/1135850.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135850 - SH0093 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB1647 - - - Common Name - Shigella flexneri - - - Strain - IB1647 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033307 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135851.xml b/t/data/st_api_lims_new/st/samples/1135851.xml deleted file mode 100644 index 087eb20c..00000000 --- a/t/data/st_api_lims_new/st/samples/1135851.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135851 - SH0094 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB1648 - - - Common Name - Shigella flexneri - - - Strain - IB1648 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033308 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135852.xml b/t/data/st_api_lims_new/st/samples/1135852.xml deleted file mode 100644 index 85e79ca3..00000000 --- a/t/data/st_api_lims_new/st/samples/1135852.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135852 - SH0095 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB1649 - - - Common Name - Shigella flexneri - - - Strain - IB1649 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033309 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135853.xml b/t/data/st_api_lims_new/st/samples/1135853.xml deleted file mode 100644 index a2826e18..00000000 --- a/t/data/st_api_lims_new/st/samples/1135853.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135853 - SH0096 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB1650 - - - Common Name - Shigella flexneri - - - Strain - IB1650 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033310 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135854.xml b/t/data/st_api_lims_new/st/samples/1135854.xml deleted file mode 100644 index aadf873f..00000000 --- a/t/data/st_api_lims_new/st/samples/1135854.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135854 - SH0097 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB1651 - - - Common Name - Shigella flexneri - - - Strain - IB1651 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033311 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135855.xml b/t/data/st_api_lims_new/st/samples/1135855.xml deleted file mode 100644 index 30b5898f..00000000 --- a/t/data/st_api_lims_new/st/samples/1135855.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135855 - SH0098 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB1652 - - - Common Name - Shigella flexneri - - - Strain - IB1652 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033312 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135856.xml b/t/data/st_api_lims_new/st/samples/1135856.xml deleted file mode 100644 index cc019185..00000000 --- a/t/data/st_api_lims_new/st/samples/1135856.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135856 - SH0099 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB1653 - - - Common Name - Shigella flexneri - - - Strain - IB1653 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033313 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135857.xml b/t/data/st_api_lims_new/st/samples/1135857.xml deleted file mode 100644 index 151c136f..00000000 --- a/t/data/st_api_lims_new/st/samples/1135857.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135857 - SH0100 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB1654 - - - Common Name - Shigella flexneri - - - Strain - IB1654 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033314 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135858.xml b/t/data/st_api_lims_new/st/samples/1135858.xml deleted file mode 100644 index 922ef444..00000000 --- a/t/data/st_api_lims_new/st/samples/1135858.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135858 - SH0101 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB1655 - - - Common Name - Shigella flexneri - - - Strain - IB1655 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033315 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135859.xml b/t/data/st_api_lims_new/st/samples/1135859.xml deleted file mode 100644 index 293abbca..00000000 --- a/t/data/st_api_lims_new/st/samples/1135859.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135859 - SH0102 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB1656 - - - Common Name - Shigella flexneri - - - Strain - IB1656 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033316 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135860.xml b/t/data/st_api_lims_new/st/samples/1135860.xml deleted file mode 100644 index 78336b70..00000000 --- a/t/data/st_api_lims_new/st/samples/1135860.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135860 - SH0103 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB1657 - - - Common Name - Shigella flexneri - - - Strain - IB1657 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033317 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135861.xml b/t/data/st_api_lims_new/st/samples/1135861.xml deleted file mode 100644 index 59eda8ec..00000000 --- a/t/data/st_api_lims_new/st/samples/1135861.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135861 - SH0104 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB1658 - - - Common Name - Shigella flexneri - - - Strain - IB1658 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033318 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135862.xml b/t/data/st_api_lims_new/st/samples/1135862.xml deleted file mode 100644 index a73427a2..00000000 --- a/t/data/st_api_lims_new/st/samples/1135862.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135862 - SH0105 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB1659 - - - Common Name - Shigella flexneri - - - Strain - IB1659 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033319 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135863.xml b/t/data/st_api_lims_new/st/samples/1135863.xml deleted file mode 100644 index 2e4c2620..00000000 --- a/t/data/st_api_lims_new/st/samples/1135863.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135863 - SH0106 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB1660 - - - Common Name - Shigella flexneri - - - Strain - IB1660 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033320 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135864.xml b/t/data/st_api_lims_new/st/samples/1135864.xml deleted file mode 100644 index bf5c5ac1..00000000 --- a/t/data/st_api_lims_new/st/samples/1135864.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135864 - SH0107 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB1661 - - - Common Name - Shigella flexneri - - - Strain - IB1661 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033321 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135865.xml b/t/data/st_api_lims_new/st/samples/1135865.xml deleted file mode 100644 index 2f4a1e53..00000000 --- a/t/data/st_api_lims_new/st/samples/1135865.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135865 - SH0108 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB1662 - - - Common Name - Shigella flexneri - - - Strain - IB1662 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033322 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135866.xml b/t/data/st_api_lims_new/st/samples/1135866.xml deleted file mode 100644 index 0dec9f44..00000000 --- a/t/data/st_api_lims_new/st/samples/1135866.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135866 - SH0109 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB1663 - - - Common Name - Shigella flexneri - - - Strain - IB1663 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033323 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135867.xml b/t/data/st_api_lims_new/st/samples/1135867.xml deleted file mode 100644 index e216eebd..00000000 --- a/t/data/st_api_lims_new/st/samples/1135867.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135867 - SH0110 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB1664 - - - Common Name - Shigella flexneri - - - Strain - IB1664 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033324 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135868.xml b/t/data/st_api_lims_new/st/samples/1135868.xml deleted file mode 100644 index 14cf1c6d..00000000 --- a/t/data/st_api_lims_new/st/samples/1135868.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135868 - SH0111 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB1665 - - - Common Name - Shigella flexneri - - - Strain - IB1665 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033325 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135869.xml b/t/data/st_api_lims_new/st/samples/1135869.xml deleted file mode 100644 index 4f1923a9..00000000 --- a/t/data/st_api_lims_new/st/samples/1135869.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135869 - SH0112 - 1826 - false - - - Dose - - - - Disease State - - - - Concentration determind by - - - - Purification method - - - - Sample Visibility - Hold - - - Public Name - IB1666 - - - Gender - Not Applicable - - - Volume (µl) - - - - Developmental Stage - - - - Plate - - - - Ethnicity - - - - Organism - Shigella flexneri - - - Disease - - - - RNAi - - - - Phenotype - - - - Date of sample collection - - - - Is re-submitted? - - - - TAXON ID - 623 - - - Sample type - - - - Sample purified - - - - ENA Sample Accession Number - ERS033326 - - - Strain - IB1666 - - - GC content - Neutral - - - Genotype - - - - Date of sample extraction - - - - Sibling - - - - Mother - - - - Geographical region - - - - Immunoprecipitate - - - - Cell Type - - - - Replicate - - - - Cohort - - - - Age - - - - Sample Description - - - - Common Name - Shigella flexneri - - - Treatment - - - - Time Point - - - - Growth Condition - - - - Compound - - - - Sample storage conditions - - - - Sample extraction method - - - - Subject - - - - Organism Part - - - - Father - - - - Country of origin - - - - Concentration - - - - DNA source - Genomic - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135870.xml b/t/data/st_api_lims_new/st/samples/1135870.xml deleted file mode 100644 index 6373141b..00000000 --- a/t/data/st_api_lims_new/st/samples/1135870.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135870 - SH0113 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB1667 - - - Common Name - Shigella flexneri - - - Strain - IB1667 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033327 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135871.xml b/t/data/st_api_lims_new/st/samples/1135871.xml deleted file mode 100644 index 2d529480..00000000 --- a/t/data/st_api_lims_new/st/samples/1135871.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135871 - SH0114 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB1668 - - - Common Name - Shigella flexneri - - - Strain - IB1668 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033328 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135872.xml b/t/data/st_api_lims_new/st/samples/1135872.xml deleted file mode 100644 index c876a60a..00000000 --- a/t/data/st_api_lims_new/st/samples/1135872.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135872 - SH0115 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB1669 - - - Common Name - Shigella flexneri - - - Strain - IB1669 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033329 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135873.xml b/t/data/st_api_lims_new/st/samples/1135873.xml deleted file mode 100644 index 17ae4d08..00000000 --- a/t/data/st_api_lims_new/st/samples/1135873.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135873 - SH0116 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB1670 - - - Common Name - Shigella flexneri - - - Strain - IB1670 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033330 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135874.xml b/t/data/st_api_lims_new/st/samples/1135874.xml deleted file mode 100644 index 021fcd2f..00000000 --- a/t/data/st_api_lims_new/st/samples/1135874.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135874 - SH0117 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB2490 - - - Common Name - Shigella flexneri - - - Strain - IB2490 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033331 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135875.xml b/t/data/st_api_lims_new/st/samples/1135875.xml deleted file mode 100644 index 765e08b9..00000000 --- a/t/data/st_api_lims_new/st/samples/1135875.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135875 - SH0118 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB2491 - - - Common Name - Shigella flexneri - - - Strain - IB2491 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033332 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135876.xml b/t/data/st_api_lims_new/st/samples/1135876.xml deleted file mode 100644 index d41353e1..00000000 --- a/t/data/st_api_lims_new/st/samples/1135876.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135876 - SH0119 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB1685 - - - Common Name - Shigella flexneri - - - Strain - IB1685 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033333 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135877.xml b/t/data/st_api_lims_new/st/samples/1135877.xml deleted file mode 100644 index db78a177..00000000 --- a/t/data/st_api_lims_new/st/samples/1135877.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135877 - SH0120 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB1721 - - - Common Name - Shigella flexneri - - - Strain - IB1721 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033334 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135878.xml b/t/data/st_api_lims_new/st/samples/1135878.xml deleted file mode 100644 index 85d3a5fa..00000000 --- a/t/data/st_api_lims_new/st/samples/1135878.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135878 - SH0121 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB1788 - - - Common Name - Shigella flexneri - - - Strain - IB1788 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033335 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135879.xml b/t/data/st_api_lims_new/st/samples/1135879.xml deleted file mode 100644 index 0d778cde..00000000 --- a/t/data/st_api_lims_new/st/samples/1135879.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135879 - SH0122 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB1789 - - - Common Name - Shigella flexneri - - - Strain - IB1789 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033336 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135880.xml b/t/data/st_api_lims_new/st/samples/1135880.xml deleted file mode 100644 index 2de2d2d1..00000000 --- a/t/data/st_api_lims_new/st/samples/1135880.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135880 - SH0123 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB1835 - - - Common Name - Shigella flexneri - - - Strain - IB1835 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033337 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135881.xml b/t/data/st_api_lims_new/st/samples/1135881.xml deleted file mode 100644 index 43fb6dad..00000000 --- a/t/data/st_api_lims_new/st/samples/1135881.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135881 - SH0124 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB1885 - - - Common Name - Shigella flexneri - - - Strain - IB1885 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033338 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135882.xml b/t/data/st_api_lims_new/st/samples/1135882.xml deleted file mode 100644 index 1630a575..00000000 --- a/t/data/st_api_lims_new/st/samples/1135882.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135882 - SH0125 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB4230 - - - Common Name - Shigella flexneri - - - Strain - IB4230 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033339 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135883.xml b/t/data/st_api_lims_new/st/samples/1135883.xml deleted file mode 100644 index 6926b49d..00000000 --- a/t/data/st_api_lims_new/st/samples/1135883.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135883 - SH0126 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB4235 - - - Common Name - Shigella flexneri - - - Strain - IB4235 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033340 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135884.xml b/t/data/st_api_lims_new/st/samples/1135884.xml deleted file mode 100644 index 3361d230..00000000 --- a/t/data/st_api_lims_new/st/samples/1135884.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135884 - SH0127 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB3327 - - - Common Name - Shigella flexneri - - - Strain - IB3327 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033341 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135885.xml b/t/data/st_api_lims_new/st/samples/1135885.xml deleted file mode 100644 index b165713b..00000000 --- a/t/data/st_api_lims_new/st/samples/1135885.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135885 - SH0128 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB3328 - - - Common Name - Shigella flexneri - - - Strain - IB3328 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033342 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - 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- - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB3350 - - - Common Name - Shigella flexneri - - - Strain - IB3350 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033343 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135887.xml b/t/data/st_api_lims_new/st/samples/1135887.xml deleted file mode 100644 index 70b5b880..00000000 --- a/t/data/st_api_lims_new/st/samples/1135887.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135887 - SH0130 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB3356 - - - Common Name - Shigella flexneri - - - Strain - IB3356 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033344 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - 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- - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135889.xml b/t/data/st_api_lims_new/st/samples/1135889.xml deleted file mode 100644 index 9130f000..00000000 --- a/t/data/st_api_lims_new/st/samples/1135889.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135889 - SH0132 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB3389 - - - Common Name - Shigella flexneri - - - Strain - IB3389 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033346 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135890.xml b/t/data/st_api_lims_new/st/samples/1135890.xml deleted file mode 100644 index 19b86f21..00000000 --- a/t/data/st_api_lims_new/st/samples/1135890.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135890 - SH0133 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB3391 - - - Common Name - Shigella flexneri - - - Strain - IB3391 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033347 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135891.xml b/t/data/st_api_lims_new/st/samples/1135891.xml deleted file mode 100644 index 9e7201ff..00000000 --- a/t/data/st_api_lims_new/st/samples/1135891.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135891 - SH0134 - 1826 - false - - - Dose - - - - Disease State - - - - Concentration determind by - - - - Purification method - - - - Sample Visibility - Hold - - - Public Name - IB3396 - - - Gender - Not Applicable - - - Volume (µl) - - - - Developmental Stage - - - - Plate - - - - Ethnicity - - - - Organism - Shigella flexneri - - - Disease - - - - RNAi - - - - Phenotype - - - - Date of sample collection - - - - Is re-submitted? - - - - TAXON ID - 623 - - - Sample type - - - - Sample purified - - - - ENA Sample Accession Number - ERS033348 - - - Strain - IB3396 - - - GC content - Neutral - - - Genotype - - - - Date of sample extraction - - - - Sibling - - - - Mother - - - - Geographical region - - - - Immunoprecipitate - - - - Cell Type - - - - Replicate - - - - Cohort - - - - Age - - - - Sample Description - - - - Common Name - Shigella flexneri - - - Treatment - - - - Time Point - - - - Growth Condition - - - - Compound - - - - Sample storage conditions - - - - Sample extraction method - - - - Subject - - - - Organism Part - - - - Father - - - - Country of origin - - - - Concentration - - - - DNA source - Genomic - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135892.xml b/t/data/st_api_lims_new/st/samples/1135892.xml deleted file mode 100644 index 4749fc9a..00000000 --- a/t/data/st_api_lims_new/st/samples/1135892.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135892 - SH0135 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB3404 - - - Common Name - Shigella flexneri - - - Strain - IB3404 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033349 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135893.xml b/t/data/st_api_lims_new/st/samples/1135893.xml deleted file mode 100644 index 2fb35917..00000000 --- a/t/data/st_api_lims_new/st/samples/1135893.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135893 - SH0136 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB3432 - - - Common Name - Shigella flexneri - - - Strain - IB3432 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033350 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135894.xml b/t/data/st_api_lims_new/st/samples/1135894.xml deleted file mode 100644 index ce057fdd..00000000 --- a/t/data/st_api_lims_new/st/samples/1135894.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135894 - SH0137 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB0700 - - - Common Name - Shigella flexneri - - - Strain - IB0700 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033351 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135895.xml b/t/data/st_api_lims_new/st/samples/1135895.xml deleted file mode 100644 index 0f473de1..00000000 --- a/t/data/st_api_lims_new/st/samples/1135895.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135895 - SH0138 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB0708 - - - Common Name - Shigella flexneri - - - Strain - IB0708 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033352 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135896.xml b/t/data/st_api_lims_new/st/samples/1135896.xml deleted file mode 100644 index 28158875..00000000 --- a/t/data/st_api_lims_new/st/samples/1135896.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135896 - SH0139 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB0709 - - - Common Name - Shigella flexneri - - - Strain - IB0709 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033353 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135897.xml b/t/data/st_api_lims_new/st/samples/1135897.xml deleted file mode 100644 index be265272..00000000 --- a/t/data/st_api_lims_new/st/samples/1135897.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135897 - SH0140 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB0711 - - - Common Name - Shigella flexneri - - - Strain - IB0711 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033354 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135898.xml b/t/data/st_api_lims_new/st/samples/1135898.xml deleted file mode 100644 index 61af7f5c..00000000 --- a/t/data/st_api_lims_new/st/samples/1135898.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135898 - SH0141 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB0712 - - - Common Name - Shigella flexneri - - - Strain - IB0712 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033355 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135899.xml b/t/data/st_api_lims_new/st/samples/1135899.xml deleted file mode 100644 index e4676c98..00000000 --- a/t/data/st_api_lims_new/st/samples/1135899.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135899 - SH0142 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB0714 - - - Common Name - Shigella flexneri - - - Strain - IB0714 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033356 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135900.xml b/t/data/st_api_lims_new/st/samples/1135900.xml deleted file mode 100644 index 5b70974e..00000000 --- a/t/data/st_api_lims_new/st/samples/1135900.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135900 - SH0143 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB0719 - - - Common Name - Shigella flexneri - - - Strain - IB0719 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033357 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135901.xml b/t/data/st_api_lims_new/st/samples/1135901.xml deleted file mode 100644 index 2f9a39e0..00000000 --- a/t/data/st_api_lims_new/st/samples/1135901.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135901 - SH0144 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB0737 - - - Common Name - Shigella flexneri - - - Strain - IB0737 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033358 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135902.xml b/t/data/st_api_lims_new/st/samples/1135902.xml deleted file mode 100644 index 7846017f..00000000 --- a/t/data/st_api_lims_new/st/samples/1135902.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135902 - SH0145 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB0740 - - - Common Name - Shigella flexneri - - - Strain - IB0740 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033359 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135903.xml b/t/data/st_api_lims_new/st/samples/1135903.xml deleted file mode 100644 index 49026eb8..00000000 --- a/t/data/st_api_lims_new/st/samples/1135903.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135903 - SH0146 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB1709 - - - Common Name - Shigella flexneri - - - Strain - IB1709 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033360 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135904.xml b/t/data/st_api_lims_new/st/samples/1135904.xml deleted file mode 100644 index 90a9a1ae..00000000 --- a/t/data/st_api_lims_new/st/samples/1135904.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135904 - SH0147 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB1808 - - - Common Name - Shigella flexneri - - - Strain - IB1808 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033361 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135905.xml b/t/data/st_api_lims_new/st/samples/1135905.xml deleted file mode 100644 index ce7eb305..00000000 --- a/t/data/st_api_lims_new/st/samples/1135905.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135905 - SH0148 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB1848 - - - Common Name - Shigella flexneri - - - Strain - IB1848 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033362 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135906.xml b/t/data/st_api_lims_new/st/samples/1135906.xml deleted file mode 100644 index fab50318..00000000 --- a/t/data/st_api_lims_new/st/samples/1135906.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135906 - SH0149 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB1896 - - - Common Name - Shigella flexneri - - - Strain - IB1896 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033363 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135907.xml b/t/data/st_api_lims_new/st/samples/1135907.xml deleted file mode 100644 index 5ccc7283..00000000 --- a/t/data/st_api_lims_new/st/samples/1135907.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135907 - SH0150 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB2494 - - - Common Name - Shigella flexneri - - - Strain - IB2494 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033364 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135908.xml b/t/data/st_api_lims_new/st/samples/1135908.xml deleted file mode 100644 index 334a78bb..00000000 --- a/t/data/st_api_lims_new/st/samples/1135908.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135908 - SH0151 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB2495 - - - Common Name - Shigella flexneri - - - Strain - IB2495 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033365 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135909.xml b/t/data/st_api_lims_new/st/samples/1135909.xml deleted file mode 100644 index 16567a94..00000000 --- a/t/data/st_api_lims_new/st/samples/1135909.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135909 - SH0152 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB2496 - - - Common Name - Shigella flexneri - - - Strain - IB2496 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033366 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135910.xml b/t/data/st_api_lims_new/st/samples/1135910.xml deleted file mode 100644 index bf7f13c0..00000000 --- a/t/data/st_api_lims_new/st/samples/1135910.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135910 - SH0153 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB0011 - - - Common Name - Shigella flexneri - - - Strain - IB0011 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033367 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135911.xml b/t/data/st_api_lims_new/st/samples/1135911.xml deleted file mode 100644 index 910203da..00000000 --- a/t/data/st_api_lims_new/st/samples/1135911.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135911 - SH0154 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB0012 - - - Common Name - Shigella flexneri - - - Strain - IB0012 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033368 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135912.xml b/t/data/st_api_lims_new/st/samples/1135912.xml deleted file mode 100644 index f67a27c7..00000000 --- a/t/data/st_api_lims_new/st/samples/1135912.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135912 - SH0155 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB0017 - - - Common Name - Shigella flexneri - - - Strain - IB0017 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033369 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135913.xml b/t/data/st_api_lims_new/st/samples/1135913.xml deleted file mode 100644 index fed80856..00000000 --- a/t/data/st_api_lims_new/st/samples/1135913.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135913 - SH0156 - 1826 - false - - - Dose - - - - Disease State - - - - Concentration determind by - - - - Purification method - - - - Sample Visibility - Hold - - - Public Name - IB0022 - - - Gender - Not Applicable - - - Volume (µl) - - - - Developmental Stage - - - - Plate - - - - Ethnicity - - - - Organism - Shigella flexneri - - - Disease - - - - RNAi - - - - Phenotype - - - - Date of sample collection - - - - Is re-submitted? - - - - TAXON ID - 623 - - - Sample type - - - - Sample purified - - - - ENA Sample Accession Number - ERS033370 - - - Strain - IB0022 - - - GC content - Neutral - - - Genotype - - - - Date of sample extraction - - - - Sibling - - - - Mother - - - - Geographical region - - - - Immunoprecipitate - - - - Cell Type - - - - Replicate - - - - Cohort - - - - Age - - - - Sample Description - - - - Common Name - Shigella flexneri - - - Treatment - - - - Time Point - - - - Growth Condition - - - - Compound - - - - Sample storage conditions - - - - Sample extraction method - - - - Subject - - - - Organism Part - - - - Father - - - - Country of origin - - - - Concentration - - - - DNA source - Genomic - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135914.xml b/t/data/st_api_lims_new/st/samples/1135914.xml deleted file mode 100644 index b6dae5ee..00000000 --- a/t/data/st_api_lims_new/st/samples/1135914.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135914 - SH0157 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB0034 - - - Common Name - Shigella flexneri - - - Strain - IB0034 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033371 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135915.xml b/t/data/st_api_lims_new/st/samples/1135915.xml deleted file mode 100644 index b75dc959..00000000 --- a/t/data/st_api_lims_new/st/samples/1135915.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135915 - SH0158 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB0036 - - - Common Name - Shigella flexneri - - - Strain - IB0036 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033372 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135916.xml b/t/data/st_api_lims_new/st/samples/1135916.xml deleted file mode 100644 index 0dd031c3..00000000 --- a/t/data/st_api_lims_new/st/samples/1135916.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135916 - SH0159 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB0037 - - - Common Name - Shigella flexneri - - - Strain - IB0037 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033373 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135917.xml b/t/data/st_api_lims_new/st/samples/1135917.xml deleted file mode 100644 index 8c992965..00000000 --- a/t/data/st_api_lims_new/st/samples/1135917.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135917 - SH0160 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB0039 - - - Common Name - Shigella flexneri - - - Strain - IB0039 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033374 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135918.xml b/t/data/st_api_lims_new/st/samples/1135918.xml deleted file mode 100644 index d2428a16..00000000 --- a/t/data/st_api_lims_new/st/samples/1135918.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135918 - SH0161 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB0043 - - - Common Name - Shigella flexneri - - - Strain - IB0043 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033375 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135919.xml b/t/data/st_api_lims_new/st/samples/1135919.xml deleted file mode 100644 index 203d41a9..00000000 --- a/t/data/st_api_lims_new/st/samples/1135919.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135919 - SH0162 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB0045 - - - Common Name - Shigella flexneri - - - Strain - IB0045 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033376 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135920.xml b/t/data/st_api_lims_new/st/samples/1135920.xml deleted file mode 100644 index 4ea3224c..00000000 --- a/t/data/st_api_lims_new/st/samples/1135920.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135920 - SH0163 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB0046 - - - Common Name - Shigella flexneri - - - Strain - IB0046 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033377 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135921.xml b/t/data/st_api_lims_new/st/samples/1135921.xml deleted file mode 100644 index 8b22dc31..00000000 --- a/t/data/st_api_lims_new/st/samples/1135921.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135921 - SH0164 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB0047 - - - Common Name - Shigella flexneri - - - Strain - IB0047 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033378 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135922.xml b/t/data/st_api_lims_new/st/samples/1135922.xml deleted file mode 100644 index fe966831..00000000 --- a/t/data/st_api_lims_new/st/samples/1135922.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135922 - SH0165 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB0068 - - - Common Name - Shigella flexneri - - - Strain - IB0068 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033379 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135923.xml b/t/data/st_api_lims_new/st/samples/1135923.xml deleted file mode 100644 index c4b79172..00000000 --- a/t/data/st_api_lims_new/st/samples/1135923.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135923 - SH0166 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB1716 - - - Common Name - Shigella flexneri - - - Strain - IB1716 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033380 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135924.xml b/t/data/st_api_lims_new/st/samples/1135924.xml deleted file mode 100644 index 01006ac7..00000000 --- a/t/data/st_api_lims_new/st/samples/1135924.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135924 - SH0167 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB1753 - - - Common Name - Shigella flexneri - - - Strain - IB1753 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033381 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135925.xml b/t/data/st_api_lims_new/st/samples/1135925.xml deleted file mode 100644 index 1aeb03f6..00000000 --- a/t/data/st_api_lims_new/st/samples/1135925.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135925 - SH0168 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB1757 - - - Common Name - Shigella flexneri - - - Strain - IB1757 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033382 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135926.xml b/t/data/st_api_lims_new/st/samples/1135926.xml deleted file mode 100644 index 57ec6dc0..00000000 --- a/t/data/st_api_lims_new/st/samples/1135926.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135926 - SH0169 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB1762 - - - Common Name - Shigella flexneri - - - Strain - IB1762 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033383 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135927.xml b/t/data/st_api_lims_new/st/samples/1135927.xml deleted file mode 100644 index 98af4a94..00000000 --- a/t/data/st_api_lims_new/st/samples/1135927.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135927 - SH0170 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB1773 - - - Common Name - Shigella flexneri - - - Strain - IB1773 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033384 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135928.xml b/t/data/st_api_lims_new/st/samples/1135928.xml deleted file mode 100644 index 70fb3405..00000000 --- a/t/data/st_api_lims_new/st/samples/1135928.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135928 - SH0171 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB4229 - - - Common Name - Shigella flexneri - - - Strain - IB4229 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033385 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135929.xml b/t/data/st_api_lims_new/st/samples/1135929.xml deleted file mode 100644 index fd2fd3be..00000000 --- a/t/data/st_api_lims_new/st/samples/1135929.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135929 - SH0172 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB1743 - - - Common Name - Shigella flexneri - - - Strain - IB1743 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033386 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135930.xml b/t/data/st_api_lims_new/st/samples/1135930.xml deleted file mode 100644 index e29e99db..00000000 --- a/t/data/st_api_lims_new/st/samples/1135930.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135930 - SH0173 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - M90T - - - Common Name - Shigella flexneri - - - Strain - M90T - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033387 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135931.xml b/t/data/st_api_lims_new/st/samples/1135931.xml deleted file mode 100644 index a3bdb505..00000000 --- a/t/data/st_api_lims_new/st/samples/1135931.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135931 - SH0174 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - YSH6000 - - - Common Name - Shigella flexneri - - - Strain - YSH6000 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033388 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135932.xml b/t/data/st_api_lims_new/st/samples/1135932.xml deleted file mode 100644 index 8e2fb5d5..00000000 --- a/t/data/st_api_lims_new/st/samples/1135932.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135932 - SH0175 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB3325 - - - Common Name - Shigella flexneri - - - Strain - IB3325 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033389 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135933.xml b/t/data/st_api_lims_new/st/samples/1135933.xml deleted file mode 100644 index f88d3bbf..00000000 --- a/t/data/st_api_lims_new/st/samples/1135933.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135933 - SH0176 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB0058 - - - Common Name - Shigella flexneri - - - Strain - IB0058 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033390 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1135934.xml b/t/data/st_api_lims_new/st/samples/1135934.xml deleted file mode 100644 index 9ddf810b..00000000 --- a/t/data/st_api_lims_new/st/samples/1135934.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1135934 - SH0177 - 1826 - false - - - Organism - Shigella flexneri - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - IB0064 - - - Common Name - Shigella flexneri - - - Strain - IB0064 - - - TAXON ID - 623 - - - ENA Sample Accession Number - ERS033391 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 1826 - diff --git a/t/data/st_api_lims_new/st/samples/1139014.xml b/t/data/st_api_lims_new/st/samples/1139014.xml deleted file mode 100644 index 7180fdef..00000000 --- a/t/data/st_api_lims_new/st/samples/1139014.xml +++ /dev/null @@ -1,210 +0,0 @@ - - - 1139014 - SPN742 - 664 - false - - - Organism - Streptococcus pneumoniae - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - 742 - - - Common Name - Streptococcus pneumoniae - - - Strain - 742 - - - TAXON ID - 1313 - - - ENA Sample Accession Number - ERS069340 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 664 - diff --git a/t/data/st_api_lims_new/st/samples/1139015.xml b/t/data/st_api_lims_new/st/samples/1139015.xml deleted file mode 100644 index bc21923a..00000000 --- a/t/data/st_api_lims_new/st/samples/1139015.xml +++ /dev/null @@ -1,210 +0,0 @@ - - - 1139015 - SPN726 - 664 - false - - - Organism - Streptococcus pneumoniae - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - 726 - - - Common Name - Streptococcus pneumoniae - - - Strain - 726 - - - TAXON ID - 1313 - - - ENA Sample Accession Number - ERS069341 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 664 - diff --git a/t/data/st_api_lims_new/st/samples/1139016.xml b/t/data/st_api_lims_new/st/samples/1139016.xml deleted file mode 100644 index 82940047..00000000 --- a/t/data/st_api_lims_new/st/samples/1139016.xml +++ /dev/null @@ -1,210 +0,0 @@ - - - 1139016 - SPN792 - 664 - false - - - Organism - Streptococcus pneumoniae - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - 792 - - - Common Name - Streptococcus pneumoniae - - - Strain - 792 - - - TAXON ID - 1313 - - - ENA Sample Accession Number - ERS069342 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 664 - diff --git a/t/data/st_api_lims_new/st/samples/1139017.xml b/t/data/st_api_lims_new/st/samples/1139017.xml deleted file mode 100644 index 1d0f4f7b..00000000 --- a/t/data/st_api_lims_new/st/samples/1139017.xml +++ /dev/null @@ -1,210 +0,0 @@ - - - 1139017 - SPN772 - 664 - false - - - Organism - Streptococcus pneumoniae - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - 772 - - - Common Name - Streptococcus pneumoniae - - - Strain - 772 - - - TAXON ID - 1313 - - - ENA Sample Accession Number - ERS069343 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 664 - diff --git a/t/data/st_api_lims_new/st/samples/1139018.xml b/t/data/st_api_lims_new/st/samples/1139018.xml deleted file mode 100644 index 12644f35..00000000 --- a/t/data/st_api_lims_new/st/samples/1139018.xml +++ /dev/null @@ -1,210 +0,0 @@ - - - 1139018 - SPN3402 - 664 - false - - - Organism - Streptococcus pneumoniae - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - 3402 - - - Common Name - Streptococcus pneumoniae - - - Strain - 3402 - - - TAXON ID - 1313 - - - ENA Sample Accession Number - ERS069344 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 664 - diff --git a/t/data/st_api_lims_new/st/samples/1139019.xml b/t/data/st_api_lims_new/st/samples/1139019.xml deleted file mode 100644 index 8e95ff53..00000000 --- a/t/data/st_api_lims_new/st/samples/1139019.xml +++ /dev/null @@ -1,210 +0,0 @@ - - - 1139019 - SPN1110 - 664 - false - - - Organism - Streptococcus pneumoniae - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - 1110 - - - Common Name - Streptococcus pneumoniae - - - Strain - 1110 - - - TAXON ID - 1313 - - - ENA Sample Accession Number - ERS069345 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 664 - diff --git a/t/data/st_api_lims_new/st/samples/1139020.xml b/t/data/st_api_lims_new/st/samples/1139020.xml deleted file mode 100644 index b4692a48..00000000 --- a/t/data/st_api_lims_new/st/samples/1139020.xml +++ /dev/null @@ -1,210 +0,0 @@ - - - 1139020 - SPN8206 - 664 - false - - - Organism - Streptococcus pneumoniae - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - 8206 - - - Common Name - Streptococcus pneumoniae - - - Strain - 8206 - - - TAXON ID - 1313 - - - ENA Sample Accession Number - ERS069346 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 664 - diff --git a/t/data/st_api_lims_new/st/samples/1139021.xml b/t/data/st_api_lims_new/st/samples/1139021.xml deleted file mode 100644 index 4cc4d89e..00000000 --- a/t/data/st_api_lims_new/st/samples/1139021.xml +++ /dev/null @@ -1,210 +0,0 @@ - - - 1139021 - SPN5441 - 664 - false - - - Organism - Streptococcus pneumoniae - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - 5441 - - - Common Name - Streptococcus pneumoniae - - - Strain - 5441 - - - TAXON ID - 1313 - - - ENA Sample Accession Number - ERS069347 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 664 - diff --git a/t/data/st_api_lims_new/st/samples/1139022.xml b/t/data/st_api_lims_new/st/samples/1139022.xml deleted file mode 100644 index 58797c2e..00000000 --- a/t/data/st_api_lims_new/st/samples/1139022.xml +++ /dev/null @@ -1,210 +0,0 @@ - - - 1139022 - SPN456 - 664 - false - - - Organism - Streptococcus pneumoniae - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - 456 - - - Common Name - Streptococcus pneumoniae - - - Strain - 456 - - - TAXON ID - 1313 - - - ENA Sample Accession Number - ERS069348 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 664 - diff --git a/t/data/st_api_lims_new/st/samples/1139023.xml b/t/data/st_api_lims_new/st/samples/1139023.xml deleted file mode 100644 index 8b8e0907..00000000 --- a/t/data/st_api_lims_new/st/samples/1139023.xml +++ /dev/null @@ -1,210 +0,0 @@ - - - 1139023 - SPN485 - 664 - false - - - Organism - Streptococcus pneumoniae - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - 485 - - - Common Name - Streptococcus pneumoniae - - - Strain - 485 - - - TAXON ID - 1313 - - - ENA Sample Accession Number - ERS069349 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 664 - diff --git a/t/data/st_api_lims_new/st/samples/1139024.xml b/t/data/st_api_lims_new/st/samples/1139024.xml deleted file mode 100644 index 38025d3f..00000000 --- a/t/data/st_api_lims_new/st/samples/1139024.xml +++ /dev/null @@ -1,210 +0,0 @@ - - - 1139024 - SPN2906 - 664 - false - - - Organism - Streptococcus pneumoniae - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - 2906 - - - Common Name - Streptococcus pneumoniae - - - Strain - 2906 - - - TAXON ID - 1313 - - - ENA Sample Accession Number - ERS069350 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 664 - diff --git a/t/data/st_api_lims_new/st/samples/1139025.xml b/t/data/st_api_lims_new/st/samples/1139025.xml deleted file mode 100644 index 769a8459..00000000 --- a/t/data/st_api_lims_new/st/samples/1139025.xml +++ /dev/null @@ -1,210 +0,0 @@ - - - 1139025 - SPN4705 - 664 - false - - - Organism - Streptococcus pneumoniae - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - 4705 - - - Common Name - Streptococcus pneumoniae - - - Strain - 4705 - - - TAXON ID - 1313 - - - ENA Sample Accession Number - ERS069351 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 664 - diff --git a/t/data/st_api_lims_new/st/samples/1139026.xml b/t/data/st_api_lims_new/st/samples/1139026.xml deleted file mode 100644 index 593c6ce6..00000000 --- a/t/data/st_api_lims_new/st/samples/1139026.xml +++ /dev/null @@ -1,210 +0,0 @@ - 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N/A - - - Compound - Activin - - - Dose - 10 ng/ml - - - Immunoprecipitate - Anti H3K27me3 - - - Growth Condition - Activin - - - RNAi - - - - Organism Part - N/A - - - Time Point - 4h - - - Treatment - Activin - - - Subject - - - - Disease - N/A - - - Reference Genome - Homo_sapiens (1000Genomes_hs37d5) - - - - - - - - - - - - - - - - - - - - - - - - 2712 - diff --git a/t/data/st_api_lims_new/st/samples/1672018.xml b/t/data/st_api_lims_new/st/samples/1672018.xml deleted file mode 100644 index 56128f7c..00000000 --- a/t/data/st_api_lims_new/st/samples/1672018.xml +++ /dev/null @@ -1,227 +0,0 @@ - - - 1672018 - SB-1-K4 - 2712 - false - - - Organism - Human - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - 25 - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Female - - - Donor Id - - - - DNA source - Genomic - - - Public Name - SB_H3K4me3_replicate1 - - - Common Name - Homo sapiens - - - Strain - - - - TAXON ID - 9606 - - - ENA Sample Accession Number - ERS329833 - - - Sample Description - ChIP for H3K4me3 from H9 cells treated with 10uM SB431542 - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - Wildtype - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - N/A - - - Cell Type - H9 hESC line - - - Disease State - N/A - - - Compound - SB431542 - - - Dose - 10 uM - - - Immunoprecipitate - Anti H3K4me3 - - - Growth Condition - SB431542 - - - RNAi - - - - Organism Part - N/A - - - Time Point - 4h - - - Treatment - SB431542 - - - Subject - - - - Disease - N/A - - - Reference Genome - Homo_sapiens (1000Genomes_hs37d5) - - - - - - - - - - - - - - - - - - - - - - - - 2712 - diff --git a/t/data/st_api_lims_new/st/samples/1672019.xml b/t/data/st_api_lims_new/st/samples/1672019.xml deleted file mode 100644 index 4b123493..00000000 --- a/t/data/st_api_lims_new/st/samples/1672019.xml +++ /dev/null @@ -1,227 +0,0 @@ - - - 1672019 - SB-2-K4 - 2712 - false - - - Organism - Human - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - 25 - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Female - - - Donor Id - - - - DNA source - Genomic - - - Public Name - SB_H3K4me3_replicate2 - - - Common Name - Homo sapiens - - - Strain - - - - TAXON ID - 9606 - - - ENA Sample Accession Number - ERS329834 - - - Sample Description - ChIP for H3K4me3 from H9 cells treated with 10uM SB431542 - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - Wildtype - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - N/A - - - Cell Type - H9 hESC line - - - Disease State - N/A - - - Compound - SB431542 - - - Dose - 10 uM - - - Immunoprecipitate - Anti H3K4me3 - - - Growth Condition - SB431542 - - - RNAi - - - - Organism Part - N/A - - - Time Point - 4h - - - Treatment - SB431542 - - - Subject - - - - Disease - N/A - - - Reference Genome - Homo_sapiens (1000Genomes_hs37d5) - - - - - - - - - - - - - - - - - - - - - - - - 2712 - diff --git a/t/data/st_api_lims_new/st/samples/1672020.xml b/t/data/st_api_lims_new/st/samples/1672020.xml deleted file mode 100644 index a47cc4f7..00000000 --- a/t/data/st_api_lims_new/st/samples/1672020.xml +++ /dev/null @@ -1,227 +0,0 @@ - - - 1672020 - SB-3-K4 - 2712 - false - - - Organism - Human - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - 25 - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Female - - - Donor Id - - - - DNA source - Genomic - - - Public Name - SB_H3K4me3_replicate3 - - - Common Name - Homo sapiens - - - Strain - - - - TAXON ID - 9606 - - - ENA Sample Accession Number - ERS329835 - - - Sample Description - ChIP for H3K4me3 from H9 cells treated with 10uM SB431542 - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - Wildtype - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - N/A - - - Cell Type - H9 hESC line - - - Disease State - N/A - - - Compound - SB431542 - - - Dose - 10 uM - - - Immunoprecipitate - Anti H3K4me3 - - - Growth Condition - SB431542 - - - RNAi - - - - Organism Part - N/A - - - Time Point - 4h - - - Treatment - SB431542 - - - Subject - - - - Disease - N/A - - - Reference Genome - Homo_sapiens (1000Genomes_hs37d5) - - - - - - - - - - - - - - - - - - - - - - - - 2712 - diff --git a/t/data/st_api_lims_new/st/samples/1672021.xml b/t/data/st_api_lims_new/st/samples/1672021.xml deleted file mode 100644 index 2458355b..00000000 --- a/t/data/st_api_lims_new/st/samples/1672021.xml +++ /dev/null @@ -1,227 +0,0 @@ - - - 1672021 - SB-1-K27 - 2712 - false - - - Organism - Human - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - 25 - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Female - - - Donor Id - - - - DNA source - Genomic - - - Public Name - SB_H3K27me3_replicate1 - - - Common Name - Homo sapiens - - - Strain - - - - TAXON ID - 9606 - - - ENA Sample Accession Number - ERS329836 - - - Sample Description - ChIP for H3K4me27 from H9 cells treated with 10uM SB431542 - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - Wildtype - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - N/A - - - Cell Type - H9 hESC line - - - Disease State - N/A - - - Compound - SB431542 - - - Dose - 10 uM - - - Immunoprecipitate - Anti H3K27me3 - - - Growth Condition - SB431542 - - - RNAi - - - - Organism Part - N/A - - - Time Point - 4h - - - Treatment - SB431542 - - - Subject - - - - Disease - N/A - - - Reference Genome - Homo_sapiens (1000Genomes_hs37d5) - - - - - - - - - - - - - - - - - - - - - - - - 2712 - diff --git a/t/data/st_api_lims_new/st/samples/1672022.xml b/t/data/st_api_lims_new/st/samples/1672022.xml deleted file mode 100644 index 80f7c9c0..00000000 --- a/t/data/st_api_lims_new/st/samples/1672022.xml +++ /dev/null @@ -1,227 +0,0 @@ - - - 1672022 - SB-2-K27 - 2712 - false - - - Organism - Human - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - 25 - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Female - - - Donor Id - - - - DNA source - Genomic - - - Public Name - SB_H3K27me3_replicate2 - - - Common Name - Homo sapiens - - - Strain - - - - TAXON ID - 9606 - - - ENA Sample Accession Number - ERS329837 - - - Sample Description - ChIP for H3K4me27 from H9 cells treated with 10uM SB431542 - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - Wildtype - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - N/A - - - Cell Type - H9 hESC line - - - Disease State - N/A - - - Compound - SB431542 - - - Dose - 10 uM - - - Immunoprecipitate - Anti H3K27me3 - - - Growth Condition - SB431542 - - - RNAi - - - - Organism Part - N/A - - - Time Point - 4h - - - Treatment - SB431542 - - - Subject - - - - Disease - N/A - - - Reference Genome - Homo_sapiens (1000Genomes_hs37d5) - - - - - - - - - - - - - - - - - - - - - - - - 2712 - diff --git a/t/data/st_api_lims_new/st/samples/1672023.xml b/t/data/st_api_lims_new/st/samples/1672023.xml deleted file mode 100644 index a755c4ef..00000000 --- a/t/data/st_api_lims_new/st/samples/1672023.xml +++ /dev/null @@ -1,227 +0,0 @@ - - - 1672023 - SB-3-K27 - 2712 - false - - - Organism - Human - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - 25 - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Female - - - Donor Id - - - - DNA source - Genomic - - - Public Name - SB_H3K27me3_replicate3 - - - Common Name - Homo sapiens - - - Strain - - - - TAXON ID - 9606 - - - ENA Sample Accession Number - ERS329838 - - - Sample Description - ChIP for H3K4me27 from H9 cells treated with 10uM SB431542 - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - Wildtype - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - N/A - - - Cell Type - H9 hESC line - - - Disease State - N/A - - - Compound - SB431542 - - - Dose - 10 uM - - - Immunoprecipitate - Anti H3K27me3 - - - Growth Condition - SB431542 - - - RNAi - - - - Organism Part - N/A - - - Time Point - 4h - - - Treatment - SB431542 - - - Subject - - - - Disease - N/A - - - Reference Genome - Homo_sapiens (1000Genomes_hs37d5) - - - - - - - - - - - - - - - - - - - - - - - - 2712 - diff --git a/t/data/st_api_lims_new/st/samples/1672024.xml b/t/data/st_api_lims_new/st/samples/1672024.xml deleted file mode 100644 index 037d56e4..00000000 --- a/t/data/st_api_lims_new/st/samples/1672024.xml +++ /dev/null @@ -1,227 +0,0 @@ - - - 1672024 - SCRD-1-K4 - 2712 - false - - - Organism - Human - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - 25 - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Female - - - Donor Id - - - - DNA source - Genomic - - - Public Name - Scramble control Dpy30_H3K4me3_replicate1 - - - Common Name - Homo sapiens - - - Strain - - - - TAXON ID - 9606 - - - ENA Sample Accession Number - ERS329839 - - - Sample Description - ChIP for H3K4me3 from H9 cells expressing a control shRNA matched with the Dpy30 KD lines - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - Scramble shRNA - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - N/A - - - Cell Type - H9 hESC line - - - Disease State - N/A - - - Compound - Scramble shRNA - - - Dose - N/A - - - Immunoprecipitate - Anti H3K4me3 - - - Growth Condition - N/A - - - RNAi - - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - - - - Disease - N/A - - - Reference Genome - Homo_sapiens (1000Genomes_hs37d5) - - - - - - - - - - - - - - - - - - - - - - - - 2712 - diff --git a/t/data/st_api_lims_new/st/samples/1672025.xml b/t/data/st_api_lims_new/st/samples/1672025.xml deleted file mode 100644 index 84be88c0..00000000 --- a/t/data/st_api_lims_new/st/samples/1672025.xml +++ /dev/null @@ -1,227 +0,0 @@ - - - 1672025 - SCRD-2-K4 - 2712 - false - - - Organism - Human - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - 25 - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Female - - - Donor Id - - - - DNA source - Genomic - - - Public Name - Scramble control Dpy30_H3K4me3_replicate2 - - - Common Name - Homo sapiens - - - Strain - - - - TAXON ID - 9606 - - - ENA Sample Accession Number - ERS329840 - - - Sample Description - ChIP for H3K4me3 from H9 cells expressing a control shRNA matched with the Dpy30 KD lines - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - Scramble shRNA - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - N/A - - - Cell Type - H9 hESC line - - - Disease State - N/A - - - Compound - Scramble shRNA - - - Dose - N/A - - - Immunoprecipitate - Anti H3K4me3 - - - Growth Condition - N/A - - - RNAi - - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - - - - Disease - N/A - - - Reference Genome - Homo_sapiens (1000Genomes_hs37d5) - - - - - - - - - - - - - - - - - - - - - - - - 2712 - diff --git a/t/data/st_api_lims_new/st/samples/1672026.xml b/t/data/st_api_lims_new/st/samples/1672026.xml deleted file mode 100644 index 5e49a3bd..00000000 --- a/t/data/st_api_lims_new/st/samples/1672026.xml +++ /dev/null @@ -1,227 +0,0 @@ - - - 1672026 - SCRD-3-K4 - 2712 - false - - - Organism - Human - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - 25 - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Female - - - Donor Id - - - - DNA source - Genomic - - - Public Name - Scramble control Dpy30_H3K4me3_replicate3 - - - Common Name - Homo sapiens - - - Strain - - - - TAXON ID - 9606 - - - ENA Sample Accession Number - ERS329841 - - - Sample Description - ChIP for H3K4me3 from H9 cells expressing a control shRNA matched with the Dpy30 KD lines - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - Scramble shRNA - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - N/A - - - Cell Type - H9 hESC line - - - Disease State - N/A - - - Compound - Scramble shRNA - - - Dose - N/A - - - Immunoprecipitate - Anti H3K4me3 - - - Growth Condition - N/A - - - RNAi - - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - - - - Disease - N/A - - - Reference Genome - Homo_sapiens (1000Genomes_hs37d5) - - - - - - - - - - - - - - - - - - - - - - - - 2712 - diff --git a/t/data/st_api_lims_new/st/samples/1672027.xml b/t/data/st_api_lims_new/st/samples/1672027.xml deleted file mode 100644 index cffb3a50..00000000 --- a/t/data/st_api_lims_new/st/samples/1672027.xml +++ /dev/null @@ -1,227 +0,0 @@ - - - 1672027 - SCRD-1-K27 - 2712 - false - - - Organism - Human - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - 25 - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Female - - - Donor Id - - - - DNA source - Genomic - - - Public Name - Scramble control Dpy30_H3K27me3_replicate1 - - - Common Name - Homo sapiens - - - Strain - - - - TAXON ID - 9606 - - - ENA Sample Accession Number - ERS329842 - - - Sample Description - ChIP for H3K4me27 from H9 cells expressing a control shRNA matched with the Dpy30 KD lines - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - Scramble shRNA - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - N/A - - - Cell Type - H9 hESC line - - - Disease State - N/A - - - Compound - Scramble shRNA - - - Dose - N/A - - - Immunoprecipitate - Anti H3K27me3 - - - Growth Condition - N/A - - - RNAi - - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - - - - Disease - N/A - - - Reference Genome - Homo_sapiens (1000Genomes_hs37d5) - - - - - - - - - - - - - - - - - - - - - - - - 2712 - diff --git a/t/data/st_api_lims_new/st/samples/1672028.xml b/t/data/st_api_lims_new/st/samples/1672028.xml deleted file mode 100644 index f871aae2..00000000 --- a/t/data/st_api_lims_new/st/samples/1672028.xml +++ /dev/null @@ -1,227 +0,0 @@ - - - 1672028 - SCRD-2-K27 - 2712 - false - - - Organism - Human - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - 25 - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Female - - - Donor Id - - - - DNA source - Genomic - - - Public Name - Scramble control Dpy30_H3K27me3_replicate2 - - - Common Name - Homo sapiens - - - Strain - - - - TAXON ID - 9606 - - - ENA Sample Accession Number - ERS329843 - - - Sample Description - ChIP for H3K4me27 from H9 cells expressing a control shRNA matched with the Dpy30 KD lines - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - Scramble shRNA - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - N/A - - - Cell Type - H9 hESC line - - - Disease State - N/A - - - Compound - Scramble shRNA - - - Dose - N/A - - - Immunoprecipitate - Anti H3K27me3 - - - Growth Condition - N/A - - - RNAi - - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - - - - Disease - N/A - - - Reference Genome - Homo_sapiens (1000Genomes_hs37d5) - - - - - - - - - - - - - - - - - - - - - - - - 2712 - diff --git a/t/data/st_api_lims_new/st/samples/1672029.xml b/t/data/st_api_lims_new/st/samples/1672029.xml deleted file mode 100644 index 307be7fc..00000000 --- a/t/data/st_api_lims_new/st/samples/1672029.xml +++ /dev/null @@ -1,227 +0,0 @@ - - - 1672029 - SCRD-3-K27 - 2712 - false - - - Organism - Human - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - 25 - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Female - - - Donor Id - - - - DNA source - Genomic - - - Public Name - Scramble control Dpy30_H3K27me3_replicate3 - - - Common Name - Homo sapiens - - - Strain - - - - TAXON ID - 9606 - - - ENA Sample Accession Number - ERS329844 - - - Sample Description - ChIP for H3K4me27 from H9 cells expressing a control shRNA matched with the Dpy30 KD lines - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - Scramble shRNA - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - N/A - - - Cell Type - H9 hESC line - - - Disease State - N/A - - - Compound - Scramble shRNA - - - Dose - N/A - - - Immunoprecipitate - Anti H3K27me3 - - - Growth Condition - N/A - - - RNAi - - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - - - - Disease - N/A - - - Reference Genome - Homo_sapiens (1000Genomes_hs37d5) - - - - - - - - - - - - - - - - - - - - - - - - 2712 - diff --git a/t/data/st_api_lims_new/st/samples/1672030.xml b/t/data/st_api_lims_new/st/samples/1672030.xml deleted file mode 100644 index 3e359c57..00000000 --- a/t/data/st_api_lims_new/st/samples/1672030.xml +++ /dev/null @@ -1,227 +0,0 @@ - - - 1672030 - DPY-1-K4 - 2712 - false - - - Organism - Human - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - 25 - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Female - - - Donor Id - - - - DNA source - Genomic - - - Public Name - Dpy30 KD_H3K4me3_replicate1 - - - Common Name - Homo sapiens - - - Strain - - - - TAXON ID - 9606 - - - ENA Sample Accession Number - ERS329845 - - - Sample Description - ChIP for H3K4me3 from H9 cells expressing an shRNA against Dpy30 - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - Dpy30 shRNA - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - N/A - - - Cell Type - H9 hESC line - - - Disease State - N/A - - - Compound - Dpy30 shRNA - - - Dose - N/A - - - Immunoprecipitate - Anti H3K4me3 - - - Growth Condition - N/A - - - RNAi - - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - - - - Disease - N/A - - - Reference Genome - Homo_sapiens (1000Genomes_hs37d5) - - - - - - - - - - - - - - - - - - - - - - - - 2712 - diff --git a/t/data/st_api_lims_new/st/samples/1672031.xml b/t/data/st_api_lims_new/st/samples/1672031.xml deleted file mode 100644 index f09fa801..00000000 --- a/t/data/st_api_lims_new/st/samples/1672031.xml +++ /dev/null @@ -1,227 +0,0 @@ - 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N/A - - - Cell Type - H9 hESC line - - - Disease State - N/A - - - Compound - Dpy30 shRNA - - - Dose - N/A - - - Immunoprecipitate - Anti H3K4me3 - - - Growth Condition - N/A - - - RNAi - - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - - - - Disease - N/A - - - Reference Genome - Homo_sapiens (1000Genomes_hs37d5) - - - - - - - - - - - - - - - - - - - - - - - - 2712 - diff --git a/t/data/st_api_lims_new/st/samples/1672032.xml b/t/data/st_api_lims_new/st/samples/1672032.xml deleted file mode 100644 index 20d060f2..00000000 --- a/t/data/st_api_lims_new/st/samples/1672032.xml +++ /dev/null @@ -1,227 +0,0 @@ - - - 1672032 - DPY-3-K4 - 2712 - false - - - Organism - Human - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - 25 - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Female - - - Donor Id - - - - DNA source - Genomic - - - Public Name - Dpy30 KD_H3K4me3_replicate3 - - - Common Name - Homo sapiens - - - Strain - - - - TAXON ID - 9606 - - - ENA Sample Accession Number - ERS329847 - - - Sample Description - ChIP for H3K4me3 from H9 cells expressing an shRNA against Dpy30 - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - Dpy30 shRNA - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - N/A - - - Cell Type - H9 hESC line - - - Disease State - N/A - - - Compound - Dpy30 shRNA - - - Dose - N/A - - - Immunoprecipitate - Anti H3K4me3 - - - Growth Condition - N/A - - - RNAi - - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - - - - Disease - N/A - - - Reference Genome - Homo_sapiens (1000Genomes_hs37d5) - - - - - - - - - - - - - - - - - - - - - - - - 2712 - diff --git a/t/data/st_api_lims_new/st/samples/1672033.xml b/t/data/st_api_lims_new/st/samples/1672033.xml deleted file mode 100644 index 56d9213b..00000000 --- a/t/data/st_api_lims_new/st/samples/1672033.xml +++ /dev/null @@ -1,227 +0,0 @@ - - - 1672033 - DPY-1-K27 - 2712 - false - - - Organism - Human - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - 25 - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Female - - - Donor Id - - - - DNA source - Genomic - - - Public Name - Dpy30 KD_H3K27me3_replicate1 - - - Common Name - Homo sapiens - - - Strain - - - - TAXON ID - 9606 - - - ENA Sample Accession Number - ERS329848 - - - Sample Description - ChIP for H3K4me27 from H9 cells expressing an shRNA against Dpy30 - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - Dpy30 shRNA - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - N/A - - - Cell Type - H9 hESC line - - - Disease State - N/A - - - Compound - Dpy30 shRNA - - - Dose - N/A - - - Immunoprecipitate - Anti H3K27me3 - - - Growth Condition - N/A - - - RNAi - - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - - - - Disease - N/A - - - Reference Genome - Homo_sapiens (1000Genomes_hs37d5) - - - - - - - - - - - - - - - - - - - - - - - - 2712 - diff --git a/t/data/st_api_lims_new/st/samples/1672034.xml b/t/data/st_api_lims_new/st/samples/1672034.xml deleted file mode 100644 index ea283d24..00000000 --- a/t/data/st_api_lims_new/st/samples/1672034.xml +++ /dev/null @@ -1,227 +0,0 @@ - - - 1672034 - DPY-2-K27 - 2712 - false - - - Organism - Human - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - 25 - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Female - - - Donor Id - - - - DNA source - Genomic - - - Public Name - Dpy30 KD_H3K27me3_replicate2 - - - Common Name - Homo sapiens - - - Strain - - - - TAXON ID - 9606 - - - ENA Sample Accession Number - ERS329849 - - - Sample Description - ChIP for H3K4me27 from H9 cells expressing an shRNA against Dpy30 - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - Dpy30 shRNA - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - N/A - - - Cell Type - H9 hESC line - - - Disease State - N/A - - - Compound - Dpy30 shRNA - - - Dose - N/A - - - Immunoprecipitate - Anti H3K27me3 - - - Growth Condition - N/A - - - RNAi - - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - - - - Disease - N/A - - - Reference Genome - Homo_sapiens (1000Genomes_hs37d5) - - - - - - - - - - - - - - - - - - - - - - - - 2712 - diff --git a/t/data/st_api_lims_new/st/samples/1672035.xml b/t/data/st_api_lims_new/st/samples/1672035.xml deleted file mode 100644 index 0b7bfcc9..00000000 --- a/t/data/st_api_lims_new/st/samples/1672035.xml +++ /dev/null @@ -1,227 +0,0 @@ - - - 1672035 - DPY-3-K27 - 2712 - false - - - Organism - Human - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - 25 - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Female - - - Donor Id - - - - DNA source - Genomic - - - Public Name - Dpy30 KD_H3K27me3_replicate3 - - - Common Name - Homo sapiens - - - Strain - - - - TAXON ID - 9606 - - - ENA Sample Accession Number - ERS329850 - - - Sample Description - ChIP for H3K4me27 from H9 cells expressing an shRNA against Dpy30 - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - Dpy30 shRNA - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - N/A - - - Cell Type - H9 hESC line - - - Disease State - N/A - - - Compound - Dpy30 shRNA - - - Dose - N/A - - - Immunoprecipitate - Anti H3K27me3 - - - Growth Condition - N/A - - - RNAi - - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - - - - Disease - N/A - - - Reference Genome - Homo_sapiens (1000Genomes_hs37d5) - - - - - - - - - - - - - - - - - - - - - - - - 2712 - diff --git a/t/data/st_api_lims_new/st/samples/1672036.xml b/t/data/st_api_lims_new/st/samples/1672036.xml deleted file mode 100644 index dd076225..00000000 --- a/t/data/st_api_lims_new/st/samples/1672036.xml +++ /dev/null @@ -1,227 +0,0 @@ - - - 1672036 - SCRN-1-K4 - 2712 - false - - - Organism - Human - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - 25 - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Female - - - Donor Id - - - - DNA source - Genomic - - - Public Name - Scramble control Nanog_H3K4me3_replicate1 - - - Common Name - Homo sapiens - - - Strain - - - - TAXON ID - 9606 - - - ENA Sample Accession Number - ERS329851 - - - Sample Description - ChIP for H3K4me3 from H9 cells expressing a control shRNA matched with the Nanog KD lines - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - Scramble shRNA - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - N/A - - - Cell Type - H9 hESC line - - - Disease State - N/A - - - Compound - Scramble shRNA - - - Dose - N/A - - - Immunoprecipitate - Anti H3K4me3 - - - Growth Condition - N/A - - - RNAi - - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - - - - Disease - N/A - - - Reference Genome - Homo_sapiens (1000Genomes_hs37d5) - - - - - - - - - - - - - - - - - - - - - - - - 2712 - diff --git a/t/data/st_api_lims_new/st/samples/1672037.xml b/t/data/st_api_lims_new/st/samples/1672037.xml deleted file mode 100644 index d02254f4..00000000 --- a/t/data/st_api_lims_new/st/samples/1672037.xml +++ /dev/null @@ -1,227 +0,0 @@ - - - 1672037 - SCRN-2-K4 - 2712 - false - - - Organism - Human - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - 25 - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Female - - - Donor Id - - - - DNA source - Genomic - - - Public Name - Scramble control Nanog_H3K4me3_replicate2 - - - Common Name - Homo sapiens - - - Strain - - - - TAXON ID - 9606 - - - ENA Sample Accession Number - ERS329852 - - - Sample Description - ChIP for H3K4me3 from H9 cells expressing a control shRNA matched with the Nanog KD lines - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - Scramble shRNA - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - N/A - - - Cell Type - H9 hESC line - - - Disease State - N/A - - - Compound - Scramble shRNA - - - Dose - N/A - - - Immunoprecipitate - Anti H3K4me3 - - - Growth Condition - N/A - - - RNAi - - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - - - - Disease - N/A - - - Reference Genome - Homo_sapiens (1000Genomes_hs37d5) - - - - - - - - - - - - - - - - - - - - - - - - 2712 - diff --git a/t/data/st_api_lims_new/st/samples/1672038.xml b/t/data/st_api_lims_new/st/samples/1672038.xml deleted file mode 100644 index 7d8f5428..00000000 --- a/t/data/st_api_lims_new/st/samples/1672038.xml +++ /dev/null @@ -1,227 +0,0 @@ - - - 1672038 - SCRN-3-K4 - 2712 - false - - - Organism - Human - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - 25 - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Female - - - Donor Id - - - - DNA source - Genomic - - - Public Name - Scramble control Nanog_H3K4me3_replicate3 - - - Common Name - Homo sapiens - - - Strain - - - - TAXON ID - 9606 - - - ENA Sample Accession Number - ERS329853 - - - Sample Description - ChIP for H3K4me3 from H9 cells expressing a control shRNA matched with the Nanog KD lines - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - Scramble shRNA - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - N/A - - - Cell Type - H9 hESC line - - - Disease State - N/A - - - Compound - Scramble shRNA - - - Dose - N/A - - - Immunoprecipitate - Anti H3K4me3 - - - Growth Condition - N/A - - - RNAi - - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - - - - Disease - N/A - - - Reference Genome - Homo_sapiens (1000Genomes_hs37d5) - - - - - - - - - - - - - - - - - - - - - - - - 2712 - diff --git a/t/data/st_api_lims_new/st/samples/1672039.xml b/t/data/st_api_lims_new/st/samples/1672039.xml deleted file mode 100644 index fe90d15e..00000000 --- a/t/data/st_api_lims_new/st/samples/1672039.xml +++ /dev/null @@ -1,227 +0,0 @@ - - - 1672039 - SCRN-1-K27 - 2712 - false - - - Organism - Human - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - 25 - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Female - - - Donor Id - - - - DNA source - Genomic - - - Public Name - Scramble control Nanog_H3K27me3_replicate1 - - - Common Name - Homo sapiens - - - Strain - - - - TAXON ID - 9606 - - - ENA Sample Accession Number - ERS329854 - - - Sample Description - ChIP for H3K4me27 from H9 cells expressing a control shRNA matched with the Nanog KD lines - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - Scramble shRNA - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - N/A - - - Cell Type - H9 hESC line - - - Disease State - N/A - - - Compound - Scramble shRNA - - - Dose - N/A - - - Immunoprecipitate - Anti H3K27me3 - - - Growth Condition - N/A - - - RNAi - - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - - - - Disease - N/A - - - Reference Genome - Homo_sapiens (1000Genomes_hs37d5) - - - - - - - - - - - - - - - - - - - - - - - - 2712 - diff --git a/t/data/st_api_lims_new/st/samples/1672040.xml b/t/data/st_api_lims_new/st/samples/1672040.xml deleted file mode 100644 index caf628eb..00000000 --- a/t/data/st_api_lims_new/st/samples/1672040.xml +++ /dev/null @@ -1,227 +0,0 @@ - - - 1672040 - SCRN-2-K27 - 2712 - false - - - Organism - Human - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - 25 - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Female - - - Donor Id - - - - DNA source - Genomic - - - Public Name - Scramble control Nanog_H3K27me3_replicate2 - - - Common Name - Homo sapiens - - - Strain - - - - TAXON ID - 9606 - - - ENA Sample Accession Number - ERS329855 - - - Sample Description - ChIP for H3K4me27 from H9 cells expressing a control shRNA matched with the Nanog KD lines - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - Scramble shRNA - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - N/A - - - Cell Type - H9 hESC line - - - Disease State - N/A - - - Compound - Scramble shRNA - - - Dose - N/A - - - Immunoprecipitate - Anti H3K27me3 - - - Growth Condition - N/A - - - RNAi - - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - - - - Disease - N/A - - - Reference Genome - Homo_sapiens (1000Genomes_hs37d5) - - - - - - - - - - - - - - - - - - - - - - - - 2712 - diff --git a/t/data/st_api_lims_new/st/samples/1672041.xml b/t/data/st_api_lims_new/st/samples/1672041.xml deleted file mode 100644 index 26a608a2..00000000 --- a/t/data/st_api_lims_new/st/samples/1672041.xml +++ /dev/null @@ -1,227 +0,0 @@ - - - 1672041 - SCRN-3-K27 - 2712 - false - - - Organism - Human - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - 25 - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Female - - - Donor Id - - - - DNA source - Genomic - - - Public Name - Scramble control Nanog_H3K27me3_replicate3 - - - Common Name - Homo sapiens - - - Strain - - - - TAXON ID - 9606 - - - ENA Sample Accession Number - ERS329856 - - - Sample Description - ChIP for H3K4me27 from H9 cells expressing a control shRNA matched with the Nanog KD lines - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - Scramble shRNA - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - N/A - - - Cell Type - H9 hESC line - - - Disease State - N/A - - - Compound - Scramble shRNA - - - Dose - N/A - - - Immunoprecipitate - Anti H3K27me3 - - - Growth Condition - N/A - - - RNAi - - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - - - - Disease - N/A - - - Reference Genome - Homo_sapiens (1000Genomes_hs37d5) - - - - - - - - - - - - - - - - - - - - - - - - 2712 - diff --git a/t/data/st_api_lims_new/st/samples/1672042.xml b/t/data/st_api_lims_new/st/samples/1672042.xml deleted file mode 100644 index 56150b08..00000000 --- a/t/data/st_api_lims_new/st/samples/1672042.xml +++ /dev/null @@ -1,227 +0,0 @@ - - - 1672042 - NAN-1-K4 - 2712 - false - - - Organism - Human - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - 25 - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Female - - - Donor Id - - - - DNA source - Genomic - - - Public Name - Nanog KD_H3K4me3_replicate1 - - - Common Name - Homo sapiens - - - Strain - - - - TAXON ID - 9606 - - - ENA Sample Accession Number - ERS329857 - - - Sample Description - ChIP for H3K4me3 from H9 cells expressing an shRNA against Nanog - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - Nanog shRNA - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - N/A - - - Cell Type - H9 hESC line - - - Disease State - N/A - - - Compound - Nanog shRNA - - - Dose - N/A - - - Immunoprecipitate - Anti H3K4me3 - - - Growth Condition - N/A - - - RNAi - - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - - - - Disease - N/A - - - Reference Genome - Homo_sapiens (1000Genomes_hs37d5) - - - - - - - - - - - - - - - - - - - - - - - - 2712 - diff --git a/t/data/st_api_lims_new/st/samples/1672043.xml b/t/data/st_api_lims_new/st/samples/1672043.xml deleted file mode 100644 index fbce8879..00000000 --- a/t/data/st_api_lims_new/st/samples/1672043.xml +++ /dev/null @@ -1,227 +0,0 @@ - - - 1672043 - NAN-2-K4 - 2712 - false - - - Organism - Human - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - 25 - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Female - - - Donor Id - - - - DNA source - Genomic - - - Public Name - Nanog KD_H3K4me3_replicate2 - - - Common Name - Homo sapiens - - - Strain - - - - TAXON ID - 9606 - - - ENA Sample Accession Number - ERS329858 - - - Sample Description - ChIP for H3K4me3 from H9 cells expressing an shRNA against Nanog - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - Nanog shRNA - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - N/A - - - Cell Type - H9 hESC line - - - Disease State - N/A - - - Compound - Nanog shRNA - - - Dose - N/A - - - Immunoprecipitate - Anti H3K4me3 - - - Growth Condition - N/A - - - RNAi - - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - - - - Disease - N/A - - - Reference Genome - Homo_sapiens (1000Genomes_hs37d5) - - - - - - - - - - - - - - - - - - - - - - - - 2712 - diff --git a/t/data/st_api_lims_new/st/samples/1672044.xml b/t/data/st_api_lims_new/st/samples/1672044.xml deleted file mode 100644 index d33666d7..00000000 --- a/t/data/st_api_lims_new/st/samples/1672044.xml +++ /dev/null @@ -1,227 +0,0 @@ - - - 1672044 - NAN-3-K4 - 2712 - false - - - Organism - Human - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - 25 - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Female - - - Donor Id - - - - DNA source - Genomic - - - Public Name - Nanog KD_H3K4me3_replicate3 - - - Common Name - Homo sapiens - - - Strain - - - - TAXON ID - 9606 - - - ENA Sample Accession Number - ERS329859 - - - Sample Description - ChIP for H3K4me3 from H9 cells expressing an shRNA against Nanog - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - Nanog shRNA - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - N/A - - - Cell Type - H9 hESC line - - - Disease State - N/A - - - Compound - Nanog shRNA - - - Dose - N/A - - - Immunoprecipitate - Anti H3K4me3 - - - Growth Condition - N/A - - - RNAi - - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - - - - Disease - N/A - - - Reference Genome - Homo_sapiens (1000Genomes_hs37d5) - - - - - - - - - - - - - - - - - - - - - - - - 2712 - diff --git a/t/data/st_api_lims_new/st/samples/1672045.xml b/t/data/st_api_lims_new/st/samples/1672045.xml deleted file mode 100644 index aa02d5f5..00000000 --- a/t/data/st_api_lims_new/st/samples/1672045.xml +++ /dev/null @@ -1,227 +0,0 @@ - - - 1672045 - NAN-1-K27 - 2712 - false - - - Organism - Human - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - 25 - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Female - - - Donor Id - - - - DNA source - Genomic - - - Public Name - Nanog KD_H3K27me3_replicate1 - - - Common Name - Homo sapiens - - - Strain - - - - TAXON ID - 9606 - - - ENA Sample Accession Number - ERS329860 - - - Sample Description - ChIP for H3K4me27 from H9 cells expressing an shRNA against Nanog - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - Nanog shRNA - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - N/A - - - Cell Type - H9 hESC line - - - Disease State - N/A - - - Compound - Nanog shRNA - - - Dose - N/A - - - Immunoprecipitate - Anti H3K27me3 - - - Growth Condition - N/A - - - RNAi - - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - - - - Disease - N/A - - - Reference Genome - Homo_sapiens (1000Genomes_hs37d5) - - - - - - - - - - - - - - - - - - - - - - - - 2712 - diff --git a/t/data/st_api_lims_new/st/samples/1672046.xml b/t/data/st_api_lims_new/st/samples/1672046.xml deleted file mode 100644 index 5d3f40f4..00000000 --- a/t/data/st_api_lims_new/st/samples/1672046.xml +++ /dev/null @@ -1,227 +0,0 @@ - - - 1672046 - NAN-2-K27 - 2712 - false - - - Organism - Human - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - 25 - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Female - - - Donor Id - - - - DNA source - Genomic - - - Public Name - Nanog KD_H3K27me3_replicate2 - - - Common Name - Homo sapiens - - - Strain - - - - TAXON ID - 9606 - - - ENA Sample Accession Number - ERS329861 - - - Sample Description - ChIP for H3K4me27 from H9 cells expressing an shRNA against Nanog - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - Nanog shRNA - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - N/A - - - Cell Type - H9 hESC line - - - Disease State - N/A - - - Compound - Nanog shRNA - - - Dose - N/A - - - Immunoprecipitate - Anti H3K27me3 - - - Growth Condition - N/A - - - RNAi - - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - - - - Disease - N/A - - - Reference Genome - Homo_sapiens (1000Genomes_hs37d5) - - - - - - - - - - - - - - - - - - - - - - - - 2712 - diff --git a/t/data/st_api_lims_new/st/samples/1672047.xml b/t/data/st_api_lims_new/st/samples/1672047.xml deleted file mode 100644 index b4b1e24a..00000000 --- a/t/data/st_api_lims_new/st/samples/1672047.xml +++ /dev/null @@ -1,227 +0,0 @@ - - - 1672047 - NAN-3-K27 - 2712 - false - - - Organism - Human - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - 25 - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Female - - - Donor Id - - - - DNA source - Genomic - - - Public Name - Nanog KD_H3K27me3_replicate3 - - - Common Name - Homo sapiens - - - Strain - - - - TAXON ID - 9606 - - - ENA Sample Accession Number - ERS329862 - - - Sample Description - ChIP for H3K4me27 from H9 cells expressing an shRNA against Nanog - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - Nanog shRNA - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - N/A - - - Cell Type - H9 hESC line - - - Disease State - N/A - - - Compound - Nanog shRNA - - - Dose - N/A - - - Immunoprecipitate - Anti H3K27me3 - - - Growth Condition - N/A - - - RNAi - - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - - - - Disease - N/A - - - Reference Genome - Homo_sapiens (1000Genomes_hs37d5) - - - - - - - - - - - - - - - - - - - - - - - - 2712 - diff --git a/t/data/st_api_lims_new/st/samples/1672048.xml b/t/data/st_api_lims_new/st/samples/1672048.xml deleted file mode 100644 index 5fb49bfe..00000000 --- a/t/data/st_api_lims_new/st/samples/1672048.xml +++ /dev/null @@ -1,227 +0,0 @@ - - - 1672048 - ACT-INPUT - 2712 - false - - - Organism - Human - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - 25 - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Female - - - Donor Id - - - - DNA source - Genomic - - - Public Name - Activin_Input - - - Common Name - Homo sapiens - - - Strain - - - - TAXON ID - 9606 - - - ENA Sample Accession Number - ERS329863 - - - Sample Description - Pooled input DNA for ChIPs in normal and control shRNA expressing H9 - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - Mixed wildtype/Scramble shRNA - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - N/A - - - Cell Type - H9 hESC line - - - Disease State - N/A - - - Compound - Activin - - - Dose - 10 ng/ml - - - Immunoprecipitate - None - - - Growth Condition - Activin - - - RNAi - - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - Activin - - - Subject - - - - Disease - N/A - - - Reference Genome - Homo_sapiens (1000Genomes_hs37d5) - - - - - - - - - - - - - - - - - - - - - - - - 2712 - diff --git a/t/data/st_api_lims_new/st/samples/1672049.xml b/t/data/st_api_lims_new/st/samples/1672049.xml deleted file mode 100644 index 141662a1..00000000 --- a/t/data/st_api_lims_new/st/samples/1672049.xml +++ /dev/null @@ -1,227 +0,0 @@ - - - 1672049 - SB-INPUT - 2712 - false - - - Organism - Human - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - 25 - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Female - - - Donor Id - - - - DNA source - Genomic - - - Public Name - SB_Input - - - Common Name - Homo sapiens - - - Strain - - - - TAXON ID - 9606 - - - ENA Sample Accession Number - ERS329864 - - - Sample Description - Pooled input DNA for ChIPs in H9 treated with SB431542 - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - Wildtype - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - N/A - - - Cell Type - H9 hESC line - - - Disease State - N/A - - - Compound - SB431542 - - - Dose - 10 uM - - - Immunoprecipitate - None - - - Growth Condition - SB431542 - - - RNAi - - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - SB431542 - - - Subject - - - - Disease - N/A - - - Reference Genome - Homo_sapiens (1000Genomes_hs37d5) - - - - - - - - - - - - - - - - - - - - - - - - 2712 - diff --git a/t/data/st_api_lims_new/st/samples/1672050.xml b/t/data/st_api_lims_new/st/samples/1672050.xml deleted file mode 100644 index 4c53a750..00000000 --- a/t/data/st_api_lims_new/st/samples/1672050.xml +++ /dev/null @@ -1,227 +0,0 @@ - - - 1672050 - DPY-INPUT - 2712 - false - - - Organism - Human - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - 25 - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Female - - - Donor Id - - - - DNA source - Genomic - - - Public Name - Dpy30 KD_input - - - Common Name - Homo sapiens - - - Strain - - - - TAXON ID - 9606 - - - ENA Sample Accession Number - ERS329865 - - - Sample Description - Pooled input DNA for ChIPs in H9 expressing an shRNA against Dpy30 - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - Dpy30 shRNA - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - N/A - - - Cell Type - H9 hESC line - - - Disease State - N/A - - - Compound - Dpy30 shRNA - - - Dose - N/A - - - Immunoprecipitate - None - - - Growth Condition - N/A - - - RNAi - - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - - - - Disease - N/A - - - Reference Genome - Homo_sapiens (1000Genomes_hs37d5) - - - - - - - - - - - - - - - - - - - - - - - - 2712 - diff --git a/t/data/st_api_lims_new/st/samples/1672051.xml b/t/data/st_api_lims_new/st/samples/1672051.xml deleted file mode 100644 index 83cf9277..00000000 --- a/t/data/st_api_lims_new/st/samples/1672051.xml +++ /dev/null @@ -1,227 +0,0 @@ - - - 1672051 - NAN-INPUT - 2712 - false - - - Organism - Human - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - 25 - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Female - - - Donor Id - - - - DNA source - Genomic - - - Public Name - Nanog KD_input - - - Common Name - Homo sapiens - - - Strain - - - - TAXON ID - 9606 - - - ENA Sample Accession Number - ERS329866 - - - Sample Description - Pooled input DNA for ChIPs in H9 expressing an shRNA against Nanog - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - Nanog shRNA - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - N/A - - - Cell Type - H9 hESC line - - - Disease State - N/A - - - Compound - Nanog shRNA - - - Dose - N/A - - - Immunoprecipitate - None - - - Growth Condition - N/A - - - RNAi - - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - - - - Disease - N/A - - - Reference Genome - Homo_sapiens (1000Genomes_hs37d5) - - - - - - - - - - - - - - - - - - - - - - - - 2712 - diff --git a/t/data/st_api_lims_new/st/samples/1673265.xml b/t/data/st_api_lims_new/st/samples/1673265.xml deleted file mode 100644 index abe299ea..00000000 --- a/t/data/st_api_lims_new/st/samples/1673265.xml +++ /dev/null @@ -1,213 +0,0 @@ - - - 1673265 - k-1 - 2717 - false - - - Organism - Mouse - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - Donor Id - - - - DNA source - Genomic - - - Public Name - k-1 - - - Common Name - mus musculus - - - Strain - - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS331837 - - - Sample Description - Enriched mRNA from ES cells. A 5 base indexing sequence (GAGGC) is bases 6 to 10 of read 1 followed by polyT - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - Wildtype - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - N/A - - - Cell Type - ES Cell - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - control - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (GRCm38) - - - - - - - - - - 2717 - diff --git a/t/data/st_api_lims_new/st/samples/1673266.xml b/t/data/st_api_lims_new/st/samples/1673266.xml deleted file mode 100644 index 54392037..00000000 --- a/t/data/st_api_lims_new/st/samples/1673266.xml +++ /dev/null @@ -1,213 +0,0 @@ - - - 1673266 - k-2 - 2717 - false - - - Organism - Mouse - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - Donor Id - - - - DNA source - Genomic - - - Public Name - k-2 - - - Common Name - mus musculus - - - Strain - - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS331838 - - - Sample Description - Enriched mRNA from ES cells. A 5 base indexing sequence (AGAAG) is bases 6 to 10 of read 1 followed by polyT - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - Wildtype - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - N/A - - - Cell Type - ES Cell - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - control - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (GRCm38) - - - - - - - - - - 2717 - diff --git a/t/data/st_api_lims_new/st/samples/1673267.xml b/t/data/st_api_lims_new/st/samples/1673267.xml deleted file mode 100644 index dc63c81f..00000000 --- a/t/data/st_api_lims_new/st/samples/1673267.xml +++ /dev/null @@ -1,213 +0,0 @@ - - - 1673267 - k-3 - 2717 - false - - - Organism - Mouse - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - Donor Id - - - - DNA source - Genomic - - - Public Name - k-3 - - - Common Name - mus musculus - - - Strain - - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS331839 - - - Sample Description - Enriched mRNA from ES cells. A 5 base indexing sequence (CAGAG) is bases 6 to 10 of read 1 followed by polyT - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - Wildtype - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - N/A - - - Cell Type - ES Cell - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - control - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (GRCm38) - - - - - - - - - - 2717 - diff --git a/t/data/st_api_lims_new/st/samples/1673268.xml b/t/data/st_api_lims_new/st/samples/1673268.xml deleted file mode 100644 index 2d7bfda8..00000000 --- a/t/data/st_api_lims_new/st/samples/1673268.xml +++ /dev/null @@ -1,213 +0,0 @@ - - - 1673268 - 2i-1 - 2717 - false - - - Organism - Mouse - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - Donor Id - - - - DNA source - Genomic - - - Public Name - 2i-1 - - - Common Name - mus musculus - - - Strain - - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS331840 - - - Sample Description - Enriched mRNA from ES cells. A 5 base indexing sequence (GCACG) is bases 6 to 10 of read 1 followed by polyT - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - Wildtype - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - N/A - - - Cell Type - ES Cell - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - 2i - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (GRCm38) - - - - - - - - - - 2717 - diff --git a/t/data/st_api_lims_new/st/samples/1673269.xml b/t/data/st_api_lims_new/st/samples/1673269.xml deleted file mode 100644 index e9ba82d3..00000000 --- a/t/data/st_api_lims_new/st/samples/1673269.xml +++ /dev/null @@ -1,213 +0,0 @@ - - - 1673269 - 2i-2 - 2717 - false - - - Organism - Mouse - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - Donor Id - - - - DNA source - Genomic - - - Public Name - 2i-2 - - - Common Name - mus musculus - - - Strain - - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS331841 - - - Sample Description - Enriched mRNA from ES cells. A 5 base indexing sequence (CGCAA) is bases 6 to 10 of read 1 followed by polyT - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - Wildtype - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - N/A - - - Cell Type - ES Cell - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - 2i - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (GRCm38) - - - - - - - - - - 2717 - diff --git a/t/data/st_api_lims_new/st/samples/1673270.xml b/t/data/st_api_lims_new/st/samples/1673270.xml deleted file mode 100644 index 2dbc7b43..00000000 --- a/t/data/st_api_lims_new/st/samples/1673270.xml +++ /dev/null @@ -1,213 +0,0 @@ - - - 1673270 - 2i-3 - 2717 - false - - - Organism - Mouse - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - Donor Id - - - - DNA source - Genomic - - - Public Name - 2i-3 - - - Common Name - mus musculus - - - Strain - - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS331842 - - - Sample Description - Enriched mRNA from ES cells. A 5 base indexing sequence (CAAGA) is bases 6 to 10 of read 1 followed by polyT - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - Wildtype - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - N/A - - - Cell Type - ES Cell - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - 2i - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - N/A - - - Reference Genome - Mus_musculus (GRCm38) - - - - - - - - - - 2717 - diff --git a/t/data/st_api_lims_new/st/samples/1677420.xml b/t/data/st_api_lims_new/st/samples/1677420.xml deleted file mode 100644 index dcb8cef3..00000000 --- a/t/data/st_api_lims_new/st/samples/1677420.xml +++ /dev/null @@ -1,213 +0,0 @@ - - - 1677420 - zmp_ph23_1m - 2311 - false - - - Organism - zebrafish - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Unknown - - - Donor Id - - - - DNA source - Genomic - - - Public Name - ZMP phenotype 23.1 mutant - - - Common Name - Danio rerio - - - Strain - mixed - - - TAXON ID - 7955 - - - ENA Sample Accession Number - ERS336311 - - - Sample Description - 3' end enriched mRNA from morphologically abnormal embryos from ZMP phenotype 23 clutch 1. A 5 base indexing sequence (GAGGCG) is bases 7 to 12 of non-index read 2 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph23 - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - N/A - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - Hatching : Long pec - ZFS:0000033 - - - Cell Type - N/A - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - N/A - - - RNAi - - - - Organism Part - Whole Embryo - - - Time Point - N/A - - - Treatment - N/A - - - Subject - - - - Disease - N/A - - - Reference Genome - Danio_rerio (zv9) - - - - - - - - - - 2311 - diff --git a/t/data/st_api_lims_new/st/samples/1677421.xml b/t/data/st_api_lims_new/st/samples/1677421.xml deleted file mode 100644 index 2bb85e2a..00000000 --- a/t/data/st_api_lims_new/st/samples/1677421.xml +++ /dev/null @@ -1,213 +0,0 @@ - - - 1677421 - zmp_ph23_1s - 2311 - false - - - Organism - zebrafish - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Unknown - - - Donor Id - - - - DNA source - Genomic - - - Public Name - ZMP phenotype 23.1 sibling - - - Common Name - Danio rerio - - - Strain - mixed - - - TAXON ID - 7955 - - - ENA Sample Accession Number - ERS336312 - - - Sample Description - 3' end enriched mRNA from morphologically normal sibling embryos from ZMP phenotype 23 clutch 1. A 5 base indexing sequence (AGAAGG) is bases 7 to 12 of non-index read 2 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph23 - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - N/A - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - Hatching : Long pec - ZFS:0000033 - - - Cell Type - N/A - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - N/A - - - RNAi - - - - Organism Part - Whole Embryo - - - Time Point - N/A - - - Treatment - N/A - - - Subject - - - - Disease - N/A - - - Reference Genome - Danio_rerio (zv9) - - - - - - - - - - 2311 - diff --git a/t/data/st_api_lims_new/st/samples/1677422.xml b/t/data/st_api_lims_new/st/samples/1677422.xml deleted file mode 100644 index a7e88ee0..00000000 --- a/t/data/st_api_lims_new/st/samples/1677422.xml +++ /dev/null @@ -1,213 +0,0 @@ - - - 1677422 - zmp_ph23_2m - 2311 - false - - - Organism - zebrafish - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Unknown - - - Donor Id - - - - DNA source - Genomic - - - Public Name - ZMP phenotype 23.2 mutant - - - Common Name - Danio rerio - - - Strain - mixed - - - TAXON ID - 7955 - - - ENA Sample Accession Number - ERS336313 - - - Sample Description - 3' end enriched mRNA from morphologically abnormal embryos from ZMP phenotype 23 clutch 2. A 5 base indexing sequence (CAGAGG) is bases 7 to 12 of non-index read 2 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph23 - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - N/A - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - Hatching : Long pec - ZFS:0000033 - - - Cell Type - N/A - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - N/A - - - RNAi - - - - Organism Part - Whole Embryo - - - Time Point - N/A - - - Treatment - N/A - - - Subject - - - - Disease - N/A - - - Reference Genome - Danio_rerio (zv9) - - - - - - - - - - 2311 - diff --git a/t/data/st_api_lims_new/st/samples/1677423.xml b/t/data/st_api_lims_new/st/samples/1677423.xml deleted file mode 100644 index 0fe0ca01..00000000 --- a/t/data/st_api_lims_new/st/samples/1677423.xml +++ /dev/null @@ -1,213 +0,0 @@ - - - 1677423 - zmp_ph23_2s - 2311 - false - - - Organism - zebrafish - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Unknown - - - Donor Id - - - - DNA source - Genomic - - - Public Name - ZMP phenotype 23.2 sibling - - - Common Name - Danio rerio - - - Strain - mixed - - - TAXON ID - 7955 - - - ENA Sample Accession Number - ERS336314 - - - Sample Description - 3' end enriched mRNA from morphologically normal sibling embryos from ZMP phenotype 23 clutch 2. A 5 base indexing sequence (GCACGG) is bases 7 to 12 of non-index read 2 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph23 - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - N/A - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - Hatching : Long pec - ZFS:0000033 - - - Cell Type - N/A - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - N/A - - - RNAi - - - - Organism Part - Whole Embryo - - - Time Point - N/A - - - Treatment - N/A - - - Subject - - - - Disease - N/A - - - Reference Genome - Danio_rerio (zv9) - - - - - - - - - - 2311 - diff --git a/t/data/st_api_lims_new/st/samples/1677424.xml b/t/data/st_api_lims_new/st/samples/1677424.xml deleted file mode 100644 index b2b71dba..00000000 --- a/t/data/st_api_lims_new/st/samples/1677424.xml +++ /dev/null @@ -1,213 +0,0 @@ - - - 1677424 - zmp_ph23_3m - 2311 - false - - - Organism - zebrafish - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Unknown - - - Donor Id - - - - DNA source - Genomic - - - Public Name - ZMP phenotype 23.3 mutant - - - Common Name - Danio rerio - - - Strain - mixed - - - TAXON ID - 7955 - - - ENA Sample Accession Number - ERS336315 - - - Sample Description - 3' end enriched mRNA from morphologically abnormal embryos from ZMP phenotype 23 clutch 3. A 5 base indexing sequence (CGCAAG) is bases 7 to 12 of non-index read 2 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph23 - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - N/A - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - Hatching : Long pec - ZFS:0000033 - - - Cell Type - N/A - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - N/A - - - RNAi - - - - Organism Part - Whole Embryo - - - Time Point - N/A - - - Treatment - N/A - - - Subject - - - - Disease - N/A - - - Reference Genome - Danio_rerio (zv9) - - - - - - - - - - 2311 - diff --git a/t/data/st_api_lims_new/st/samples/1677425.xml b/t/data/st_api_lims_new/st/samples/1677425.xml deleted file mode 100644 index e1d7d819..00000000 --- a/t/data/st_api_lims_new/st/samples/1677425.xml +++ /dev/null @@ -1,213 +0,0 @@ - - - 1677425 - zmp_ph23_3s - 2311 - false - - - Organism - zebrafish - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Unknown - - - Donor Id - - - - DNA source - Genomic - - - Public Name - ZMP phenotype 23.3 sibling - - - Common Name - Danio rerio - - - Strain - mixed - - - TAXON ID - 7955 - - - ENA Sample Accession Number - ERS336316 - - - Sample Description - 3' end enriched mRNA from morphologically normal sibling embryos from ZMP phenotype 23 clutch 3. A 6 base indexing sequence (CAAGAG) is bases 7 to 12 of non-index read 2 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_ph23 - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - N/A - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - Hatching : Long pec - ZFS:0000033 - - - Cell Type - N/A - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - N/A - - - RNAi - - - - Organism Part - Whole Embryo - - - Time Point - N/A - - - Treatment - N/A - - - Subject - - - - Disease - N/A - - - Reference Genome - Danio_rerio (zv9) - - - - - - - - - - 2311 - diff --git a/t/data/st_api_lims_new/st/samples/1678317.xml b/t/data/st_api_lims_new/st/samples/1678317.xml deleted file mode 100644 index 23c3d478..00000000 --- a/t/data/st_api_lims_new/st/samples/1678317.xml +++ /dev/null @@ -1,214 +0,0 @@ - - - 1678317 - PD12856a_pd - 2687 - false - - - Organism - Human - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Unknown - - - Donor Id - PD12856a - - - DNA source - Genomic - - - Public Name - PD12856a - - - Common Name - Homo sapiens - - - Strain - - - - TAXON ID - 9606 - - - ENA Sample Accession Number - EGAN00001170543 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - Melanoma - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 2687 - diff --git a/t/data/st_api_lims_new/st/samples/1678318.xml b/t/data/st_api_lims_new/st/samples/1678318.xml deleted file mode 100644 index d4b3c876..00000000 --- a/t/data/st_api_lims_new/st/samples/1678318.xml +++ /dev/null @@ -1,214 +0,0 @@ - - - 1678318 - PD12856c_pd - 2687 - false - - - Organism - Human - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Unknown - - - Donor Id - PD12856c - - - DNA source - Genomic - - - Public Name - PD12856c - - - Common Name - Homo sapiens - - - Strain - - - - TAXON ID - 9606 - - - ENA Sample Accession Number - EGAN00001170544 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - Melanoma - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 2687 - diff --git a/t/data/st_api_lims_new/st/samples/1678319.xml b/t/data/st_api_lims_new/st/samples/1678319.xml deleted file mode 100644 index 19d4f726..00000000 --- a/t/data/st_api_lims_new/st/samples/1678319.xml +++ /dev/null @@ -1,214 +0,0 @@ - - - 1678319 - PD13314a_pd - 2687 - false - - - Organism - Human - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Unknown - - - Donor Id - PD13314a - - - DNA source - Genomic - - - Public Name - PD13314a - - - Common Name - Homo sapiens - - - Strain - - - - TAXON ID - 9606 - - - ENA Sample Accession Number - EGAN00001170545 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - Melanoma - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 2687 - diff --git a/t/data/st_api_lims_new/st/samples/1678320.xml b/t/data/st_api_lims_new/st/samples/1678320.xml deleted file mode 100644 index 32d996bc..00000000 --- a/t/data/st_api_lims_new/st/samples/1678320.xml +++ /dev/null @@ -1,214 +0,0 @@ - - - 1678320 - PD13314c_pd - 2687 - false - - - Organism - Human - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Unknown - - - Donor Id - PD13314c - - - DNA source - Genomic - - - Public Name - PD13314c - - - Common Name - Homo sapiens - - - Strain - - - - TAXON ID - 9606 - - - ENA Sample Accession Number - EGAN00001170546 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - Melanoma - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 2687 - diff --git a/t/data/st_api_lims_new/st/samples/1678321.xml b/t/data/st_api_lims_new/st/samples/1678321.xml deleted file mode 100644 index 90ccd1d6..00000000 --- a/t/data/st_api_lims_new/st/samples/1678321.xml +++ /dev/null @@ -1,214 +0,0 @@ - - - 1678321 - PD12856b_pd - 2687 - false - - - Organism - Human - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Unknown - - - Donor Id - PD12856b - - - DNA source - Genomic - - - Public Name - PD12856b - - - Common Name - Homo sapiens - - - Strain - - - - TAXON ID - 9606 - - - ENA Sample Accession Number - EGAN00001170547 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - Normal - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 2687 - diff --git a/t/data/st_api_lims_new/st/samples/1678322.xml b/t/data/st_api_lims_new/st/samples/1678322.xml deleted file mode 100644 index 6a57eee8..00000000 --- a/t/data/st_api_lims_new/st/samples/1678322.xml +++ /dev/null @@ -1,214 +0,0 @@ - - - 1678322 - PD13314b2_pd - 2687 - false - - - Organism - Human - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Unknown - - - Donor Id - PD13314b2 - - - DNA source - Genomic - - - Public Name - PD13314b2 - - - Common Name - Homo sapiens - - - Strain - - - - TAXON ID - 9606 - - - ENA Sample Accession Number - EGAN00001170548 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - Normal - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 2687 - diff --git a/t/data/st_api_lims_new/st/samples/1750.xml b/t/data/st_api_lims_new/st/samples/1750.xml deleted file mode 100644 index 012ebca1..00000000 --- a/t/data/st_api_lims_new/st/samples/1750.xml +++ /dev/null @@ -1,209 +0,0 @@ - - - 1750 - p242-NspI-PCR 2A2 - 667 - - - Phenotype - - - - Sample purified - - - - TAXON ID - 7955 - - - Country of origin - - - - Treatment - - - - Time Point - - - - Date of sample extraction - - - - Sample Description - AB GO (grandmother) of the MGH meiotic cross. The same DNA was split into three aliquots (of which this is reaction A), processed in parallel, they were: NspI cut, ligated with modified recuttable adaptor (ATTATGAGCACGACAGACGCCTGATCTRCATG and YAGATCAGGCGTCTGTCGTGCTCATAA), and PCR amplified. - - - - ENA Sample Accession Number - ERS015522 - - - Common Name - Danio rerio - - - Gender - - - - Mother - - - - Ethnicity - - - - Compound - - - - Cell Type - - - - Age - - - - Genotype - - - - Volume (µl) - - - - Dose - - - - Organism Part - - - - Growth Condition - - - - Concentration - - - - Public Name - MGH cross, AB G0, NspI digest (A), 400-600 - - - Subject - - - - RNAi - - - - Concentration determind by - - - - Is re-submitted? - - - - DNA source - - - - Sample extraction method - - - - Disease - - - - Sibling - - - - Strain - AB (MGH) - - - Cohort - - - - Immunoprecipitate - - - - Disease State - - - - Sample storage conditions - - - - Sample type - - - - Date of sample collection - - - - Developmental Stage - - - - Purification method - - - - Sample Visibility - Hold - - - GC content - Neutral - - - Father - - - - Plate - - - - Geographical region - - - - Replicate - - - - Organism - Danio rerio - - - Reference Genome - - - - - - - - - - - 667 - diff --git a/t/data/st_api_lims_new/st/samples/345259.xml b/t/data/st_api_lims_new/st/samples/345259.xml deleted file mode 100644 index a646c5a2..00000000 --- a/t/data/st_api_lims_new/st/samples/345259.xml +++ /dev/null @@ -1,223 +0,0 @@ - - - 345259 - WTCCC174444 - 747 - false - - - Treatment - - - - Time Point - - - - Growth Condition - - - - Compound - - - - Sample storage conditions - - - - Sample extraction method - - - - Subject - - - - Organism Part - - - - Father - - - - Country of origin - UK - - - Concentration - - - - DNA source - - - - Dose - - - - Disease State - - - - Concentration determind by - - - - Purification method - - - - Sample Visibility - Hold - - - Public Name - - - - Gender - Female - - - Volume (µl) - - - - Developmental Stage - - - - Plate - - - - Ethnicity - unknown - - - Organism - Human - - - Disease - - - - RNAi - - - - Phenotype - - - - Date of sample collection - - - - Is re-submitted? - - - - TAXON ID - 9606 - - - Sample type - - - - Sample purified - - - - ENA Sample Accession Number - EGAN00001023865 - - - Strain - - - - GC content - - - - Genotype - - - - Date of sample extraction - - - - Sibling - - - - Mother - - - - Geographical region - Northern - - - Immunoprecipitate - - - - Cell Type - - - - Replicate - - - - Cohort - WTCCC - - - Age - - - - Sample Description - - - - Common Name - Homo sapiens - - - Reference Genome - - - - - - - - - - - - - - - - - - - - - - - - - 747 - diff --git a/t/data/st_api_lims_new/st/samples/345353.xml b/t/data/st_api_lims_new/st/samples/345353.xml deleted file mode 100644 index 798a6512..00000000 --- a/t/data/st_api_lims_new/st/samples/345353.xml +++ /dev/null @@ -1,223 +0,0 @@ - - - 345353 - WTCCC174538 - 747 - false - - - Treatment - - - - Time Point - - - - Growth Condition - - - - Compound - - - - Sample storage conditions - - - - Sample extraction method - - - - Subject - - - - Organism Part - - - - Father - - - - Country of origin - UK - - - Concentration - - - - DNA source - - - - Dose - - - - Disease State - - - - Concentration determind by - - - - Purification method - - - - Sample Visibility - Hold - - - Public Name - - - - Gender - Female - - - Volume (µl) - - - - Developmental Stage - - - - Plate - - - - Ethnicity - unknown - - - Organism - Human - - - Disease - - - - RNAi - - - - Phenotype - - - - Date of sample collection - - - - Is re-submitted? - - - - TAXON ID - 9606 - - - Sample type - - - - Sample purified - - - - ENA Sample Accession Number - EGAN00001023959 - - - Strain - - - - GC content - - - - Genotype - - - - Date of sample extraction - - - - Sibling - - - - Mother - - - - Geographical region - Northern - - - Immunoprecipitate - - - - Cell Type - - - - Replicate - - - - Cohort - WTCCC - - - Age - - - - Sample Description - - - - Common Name - Homo sapiens - - - Reference Genome - - - - - - - - - - - - - - - - - - - - - - - - - 747 - diff --git a/t/data/st_api_lims_new/st/samples/345384.xml b/t/data/st_api_lims_new/st/samples/345384.xml deleted file mode 100644 index a4cbbf20..00000000 --- a/t/data/st_api_lims_new/st/samples/345384.xml +++ /dev/null @@ -1,223 +0,0 @@ - - - 345384 - WTCCC174569 - 747 - false - - - Treatment - - - - Time Point - - - - Growth Condition - - - - Compound - - - - Sample storage conditions - - - - Sample extraction method - - - - Subject - - - - Organism Part - - - - Father - - - - Country of origin - UK - - - Concentration - - - - DNA source - - - - Dose - - - - Disease State - - - - Concentration determind by - - - - Purification method - - - - Sample Visibility - Hold - - - Public Name - - - - Gender - Female - - - Volume (µl) - - - - Developmental Stage - - - - Plate - - - - Ethnicity - unknown - - - Organism - Human - - - Disease - - - - RNAi - - - - Phenotype - - - - Date of sample collection - - - - Is re-submitted? - - - - TAXON ID - 9606 - - - Sample type - - - - Sample purified - - - - ENA Sample Accession Number - EGAN00001023990 - - - Strain - - - - GC content - - - - Genotype - - - - Date of sample extraction - - - - Sibling - - - - Mother - - - - Geographical region - Northern - - - Immunoprecipitate - - - - Cell Type - - - - Replicate - - - - Cohort - WTCCC - - - Age - - - - Sample Description - - - - Common Name - Homo sapiens - - - Reference Genome - - - - - - - - - - - - - - - - - - - - - - - - - 747 - diff --git a/t/data/st_api_lims_new/st/samples/345394.xml b/t/data/st_api_lims_new/st/samples/345394.xml deleted file mode 100644 index caef836c..00000000 --- a/t/data/st_api_lims_new/st/samples/345394.xml +++ /dev/null @@ -1,223 +0,0 @@ - - - 345394 - WTCCC174579 - 747 - false - - - Treatment - - - - Time Point - - - - Growth Condition - - - - Compound - - - - Sample storage conditions - - - - Sample extraction method - - - - Subject - - - - Organism Part - - - - Father - - - - Country of origin - UK - - - Concentration - - - - DNA source - - - - Dose - - - - Disease State - - - - Concentration determind by - - - - Purification method - - - - Sample Visibility - Hold - - - Public Name - - - - Gender - Female - - - Volume (µl) - - - - Developmental Stage - - - - Plate - - - - Ethnicity - unknown - - - Organism - Human - - - Disease - - - - RNAi - - - - Phenotype - - - - Date of sample collection - - - - Is re-submitted? - - - - TAXON ID - 9606 - - - Sample type - - - - Sample purified - - - - ENA Sample Accession Number - EGAN00001024000 - - - Strain - - - - GC content - - - - Genotype - - - - Date of sample extraction - - - - Sibling - - - - Mother - - - - Geographical region - Northern - - - Immunoprecipitate - - - - Cell Type - - - - Replicate - - - - Cohort - WTCCC - - - Age - - - - Sample Description - - - - Common Name - Homo sapiens - - - Reference Genome - - - - - - - - - - - - - - - - - - - - - - - - - 747 - diff --git a/t/data/st_api_lims_new/st/samples/351073.xml b/t/data/st_api_lims_new/st/samples/351073.xml deleted file mode 100644 index 7eaf568b..00000000 --- a/t/data/st_api_lims_new/st/samples/351073.xml +++ /dev/null @@ -1,223 +0,0 @@ - - - 351073 - WTCCC125541 - 747 - false - - - Treatment - - - - Time Point - - - - Growth Condition - - - - Compound - - - - Sample storage conditions - - - - Sample extraction method - - - - Subject - - - - Organism Part - - - - Father - - - - Country of origin - UK - - - Concentration - - - - DNA source - - - - Dose - - - - Disease State - - - - Concentration determind by - - - - Purification method - - - - Sample Visibility - - - - Public Name - - - - Gender - Male - - - Volume (µl) - - - - Developmental Stage - - - - Plate - - - - Ethnicity - unknown - - - Organism - - - - Disease - - - - RNAi - - - - Phenotype - - - - Date of sample collection - - - - Is re-submitted? - - - - TAXON ID - 9606 - - - Sample type - - - - Sample purified - - - - ENA Sample Accession Number - EGAN00001072032 - - - Strain - - - - GC content - - - - Genotype - - - - Date of sample extraction - - - - Sibling - - - - Mother - - - - Geographical region - Scotland - - - Immunoprecipitate - - - - Cell Type - - - - Replicate - - - - Cohort - WTCCC - - - Age - - - - Sample Description - - - - Common Name - Homo Sapien - - - Reference Genome - - - - - - - - - - - - - - - - - - - - - - - - - 747 - diff --git a/t/data/st_api_lims_new/st/samples/351081.xml b/t/data/st_api_lims_new/st/samples/351081.xml deleted file mode 100644 index 00f2870b..00000000 --- a/t/data/st_api_lims_new/st/samples/351081.xml +++ /dev/null @@ -1,223 +0,0 @@ - - - 351081 - WTCCC125549 - 747 - false - - - Treatment - - - - Time Point - - - - Growth Condition - - - - Compound - - - - Sample storage conditions - - - - Sample extraction method - - - - Subject - - - - Organism Part - - - - Father - - - - Country of origin - UK - - - Concentration - - - - DNA source - - - - Dose - - - - Disease State - - - - Concentration determind by - - - - Purification method - - - - Sample Visibility - - - - Public Name - - - - Gender - Female - - - Volume (µl) - - - - Developmental Stage - - - - Plate - - - - Ethnicity - unknown - - - Organism - - - - Disease - - - - RNAi - - - - Phenotype - - - - Date of sample collection - - - - Is re-submitted? - - - - TAXON ID - 9606 - - - Sample type - - - - Sample purified - - - - ENA Sample Accession Number - EGAN00001072035 - - - Strain - - - - GC content - - - - Genotype - - - - Date of sample extraction - - - - Sibling - - - - Mother - - - - Geographical region - Scotland - - - Immunoprecipitate - - - - Cell Type - - - - Replicate - - - - Cohort - WTCCC - - - Age - - - - Sample Description - - - - Common Name - Homo Sapien - - - Reference Genome - - - - - - - - - - - - - - - - - - - - - - - - - 747 - diff --git a/t/data/st_api_lims_new/st/samples/351089.xml b/t/data/st_api_lims_new/st/samples/351089.xml deleted file mode 100644 index e887dd50..00000000 --- a/t/data/st_api_lims_new/st/samples/351089.xml +++ /dev/null @@ -1,223 +0,0 @@ - - - 351089 - WTCCC125557 - 747 - false - - - Treatment - - - - Time Point - - - - Growth Condition - - - - Compound - - - - Sample storage conditions - - - - Sample extraction method - - - - Subject - - - - Organism Part - - - - Father - - - - Country of origin - UK - - - Concentration - - - - DNA source - - - - Dose - - - - Disease State - - - - Concentration determind by - - - - Purification method - - - - Sample Visibility - - - - Public Name - - - - Gender - Female - - - Volume (µl) - - - - Developmental Stage - - - - Plate - - - - Ethnicity - unknown - - - Organism - - - - Disease - - - - RNAi - - - - Phenotype - - - - Date of sample collection - - - - Is re-submitted? - - - - TAXON ID - 9606 - - - Sample type - - - - Sample purified - - - - ENA Sample Accession Number - EGAN00001072036 - - - Strain - - - - GC content - - - - Genotype - - - - Date of sample extraction - - - - Sibling - - - - Mother - - - - Geographical region - Scotland - - - Immunoprecipitate - - - - Cell Type - - - - Replicate - - - - Cohort - WTCCC - - - Age - - - - Sample Description - - - - Common Name - Homo Sapien - - - Reference Genome - - - - - - - - - - - - - - - - - - - - - - - - - 747 - diff --git a/t/data/st_api_lims_new/st/samples/351099.xml b/t/data/st_api_lims_new/st/samples/351099.xml deleted file mode 100644 index 7e219db1..00000000 --- a/t/data/st_api_lims_new/st/samples/351099.xml +++ /dev/null @@ -1,223 +0,0 @@ - - - 351099 - WTCCC125567 - 747 - false - - - Treatment - - - - Time Point - - - - Growth Condition - - - - Compound - - - - Sample storage conditions - - - - Sample extraction method - - - - Subject - - - - Organism Part - - - - Father - - - - Country of origin - UK - - - Concentration - - - - DNA source - - - - Dose - - - - Disease State - - - - Concentration determind by - - - - Purification method - - - - Sample Visibility - - - - Public Name - - - - Gender - Female - - - Volume (µl) - - - - Developmental Stage - - - - Plate - - - - Ethnicity - unknown - - - Organism - - - - Disease - - - - RNAi - - - - Phenotype - - - - Date of sample collection - - - - Is re-submitted? - - - - TAXON ID - 9606 - - - Sample type - - - - Sample purified - - - - ENA Sample Accession Number - EGAN00001072037 - - - Strain - - - - GC content - - - - Genotype - - - - Date of sample extraction - - - - Sibling - - - - Mother - - - - Geographical region - Scotland - - - Immunoprecipitate - - - - Cell Type - - - - Replicate - - - - Cohort - WTCCC - - - Age - - - - Sample Description - - - - Common Name - Homo Sapien - - - Reference Genome - - - - - - - - - - - - - - - - - - - - - - - - - 747 - diff --git a/t/data/st_api_lims_new/st/samples/7283.xml b/t/data/st_api_lims_new/st/samples/7283.xml deleted file mode 100644 index 8e6af97a..00000000 --- a/t/data/st_api_lims_new/st/samples/7283.xml +++ /dev/null @@ -1,266 +0,0 @@ - - - 7283 - PD3918a - 333 - - - Phenotype - - - - Sample purified - - - - TAXON ID - 9606 - - - Country of origin - - - - Treatment - - - - Time Point - - - - Date of sample extraction - - - - Sample Description - - - - ENA Sample Accession Number - EGAN00001001569 - - - Common Name - Homo sapiens - - - Gender - Male - - - Mother - - - - Ethnicity - - - - Compound - - - - Cell Type - - - - Age - - - - Genotype - - - - Volume (µl) - - - - Dose - - - - Organism Part - - - - Growth Condition - - - - Concentration - - - - Public Name - - - - Subject - - - - RNAi - - - - Concentration determind by - - - - Is re-submitted? - - - - DNA source - Genomic - - - Sample extraction method - - - - Disease - - - - Sibling - - - - Strain - - - - Cohort - - - - Immunoprecipitate - - - - Disease State - - - - Sample storage conditions - - - - Sample type - - - - Date of sample collection - - - - Developmental Stage - - - - Purification method - - - - Sample Visibility - Hold - - - GC content - Neutral - - - Father - - - - Plate - - - - Geographical region - - - - Replicate - - - - Organism - Human - - - Reference Genome - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 333 - diff --git a/t/data/st_api_lims_new/st/studies/11.xml b/t/data/st_api_lims_new/st/studies/11.xml deleted file mode 100644 index 344808af..00000000 --- a/t/data/st_api_lims_new/st/studies/11.xml +++ /dev/null @@ -1,165 +0,0 @@ - - - 11 - Trypanosoma brucei - false - 45 - - - jm15 - jm15@sanger.ac.uk - Jacqueline McQuillan - 67 - - - - - mjs - mjs@sanger.ac.uk - Mandy Sanders - 29 - - - - - parkhill - parkhill@sanger.ac.uk - Julian Parkhill - 45 - - - - - 2007-10-29 21:25:58 +0000 - 2009-11-05 16:00:02 +0000 - - - SNP study ID - - - - What is the reason for preventing data release? - - - - ArrayExpress Accession Number - - - - Please explain the reason for delaying release (e.g., pre-existing collaborative agreement) - - - - Alignments in BAM - true - - - Reason for delaying release - - - - Comment regarding prevention of data release and approval - - - - How is the data release to be timed? - - - - Policy - - - - Study description - Pathogen. This data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria), please see http://www.sanger.ac.uk/datasharing/ - - - EGA Policy Accession Number - - - - Will you be using WTSI's standard access agreement? - - - - Study name abbreviation - - - - Does this study contain samples that are contaminated with human DNA which must be removed prior to analysis? - - - - Study Visibility - Hold - - - Delay for - - - - SNP parent study ID - - - - Comment regarding data release timing and approval - - - - EGA DAC Accession Number - - - - Has this been approved? - - - - Has the delay period been approved by the data sharing committee for this project? - - - - What is the data release strategy for this study? - - - - Are all the samples to be used in this study commercially available, unlinked anonymised cell-lines? - No - - - Do any of the samples in this study contain human DNA? - - - - ENA Study Accession Number - - - - Title - - - - Abstract - - - - ENA Project ID - - - - Study Type - Not specified - - - Faculty Sponsor - Julian Parkhill - - - What sort of study is this? - not specified - - - Reference Genome - dodo - - - diff --git a/t/data/st_api_lims_new/st/studies/162.xml b/t/data/st_api_lims_new/st/studies/162.xml deleted file mode 100644 index 97bb5f58..00000000 --- a/t/data/st_api_lims_new/st/studies/162.xml +++ /dev/null @@ -1,196 +0,0 @@ - - - 162 - Chlamydia trachomatis global diversity project - true - 112 - - - chc - chc@sanger.ac.uk - Craig Corton - 101 - - - sh16 - sh16@sanger.ac.uk - Simon Harris - 155 - - - deh - deh@sanger.ac.uk - David Harris - 138 - - - hss - hss@sanger.ac.uk - Helena Seth-Smith - 229 - - - - - chc - chc@sanger.ac.uk - Craig Corton - 101 - - - jm15 - jm15@sanger.ac.uk - Jacqueline McQuillan - 67 - - - nds - nds@sanger.ac.uk - Nishadi De Silva - 383 - - - - - tfelt - tfelt@sanger.ac.uk - Theresa Feltwell - 112 - - - - - 2008-10-02 10:51:44 +0100 - 2010-09-10 13:32:17 +0100 - - - SNP study ID - - - - What is the reason for preventing data release? - - - - ArrayExpress Accession Number - - - - Please explain the reason for delaying release (e.g., pre-existing collaborative agreement) - - - - Alignments in BAM - true - - - Reason for delaying release - - - - Comment regarding prevention of data release and approval - - - - How is the data release to be timed? - standard - - - Policy - - - - Study description - Chlamydia trachomatis is the most common cause of sexually transmitted infections in the UK, a statistic which is also reflected globally. There are two biovariants of C. trachomatis: trachoma and lyphogranuloma venereum (LGV). Trachoma isolates are non-invasive, whereas the LGV strains are invasive causing a disseminating infection of the local draining lymph nodes. Genome analysis has shown that the ocular and the genital trachoma isolates are 99.6 % identical at the sequence level and only show small differences in overall gene content. However, differences in coding potential, and the loss of function through point mutation, have been used to subdivide the trachoma strains into those associated with ocular and genital infections. We have previously sequenced a two LGV isolates; a long-term laboratory passaged strain and the recent ‘epidemic’ clinical LGV isolate causing proctitis. From these strains it was evident that there were no whole gene differences and that the recent epidemic isolate was a classical LGV isolate and has been circulating in the human population for a long time: an old strain causing a new disease. We have now put together a global collection of LGV isolates and are a sequencing them to determine the global phylogeny of this pathogen.. This data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria), please see http://www.sanger.ac.uk/datasharing/ - - - EGA Policy Accession Number - - - - Will you be using WTSI's standard access agreement? - - - - Study name abbreviation - - - - Does this study contain samples that are contaminated with human DNA which must be removed prior to analysis? - Yes - - - Study Visibility - Hold - - - Delay for - - - - SNP parent study ID - - - - Comment regarding data release timing and approval - - - - EGA DAC Accession Number - - - - Has this been approved? - - - - Has the delay period been approved by the data sharing committee for this project? - - - - What is the data release strategy for this study? - open - - - Are all the samples to be used in this study commercially available, unlinked anonymised cell-lines? - No - - - Do any of the samples in this study contain human DNA? - No - - - ENA Study Accession Number - ERP000089 - - - Title - Chlamydia trachomatis global diversity project - - - Abstract - To sequence a global collection of Chlamydia trachomatis LGV isolates in order to determine the global phylogeny. - - - - ENA Project ID - 0 - - - Study Type - Whole Genome Sequencing - - - Faculty Sponsor - Julian Parkhill - - - What sort of study is this? - genomic sequencing - - - Reference Genome - - - - diff --git a/t/data/st_api_lims_new/st/studies/1811.xml b/t/data/st_api_lims_new/st/studies/1811.xml deleted file mode 100644 index 7a1a61fe..00000000 --- a/t/data/st_api_lims_new/st/studies/1811.xml +++ /dev/null @@ -1,171 +0,0 @@ - - - 1811 - Schistosoma mansoni methylome - true - 143 - - - neh - neh@sanger.ac.uk - Nancy Holroyd - 143 - - - cb3 - cb3@sanger.ac.uk - Christine Burrows - 312 - - - - - neh - neh@sanger.ac.uk - Nancy Holroyd - 143 - - - - - neh - neh@sanger.ac.uk - Nancy Holroyd - 143 - - - - - 2011-04-11 12:51:38 +0100 - 2011-04-11 12:52:48 +0100 - - - SNP study ID - - - - What is the reason for preventing data release? - - - - ArrayExpress Accession Number - - - - Please explain the reason for delaying release (e.g., pre-existing collaborative agreement) - - - - Alignments in BAM - true - - - Reason for delaying release - - - - Comment regarding prevention of data release and approval - - - - How is the data release to be timed? - standard - - - Policy - - - - Study description - High throughput sequencing of different life cycle stages of Schistosoma mansoni to identify loci that are methylated and use the information to focus on regions of biological relevance related to development and control of disease. - - - EGA Policy Accession Number - - - - Will you be using WTSI's standard access agreement? - - - - Study name abbreviation - - - - Does this study contain samples that are contaminated with human DNA which must be removed prior to analysis? - No - - - Study Visibility - Hold - - - Delay for - - - - SNP parent study ID - - - - Comment regarding data release timing and approval - - - - EGA DAC Accession Number - - - - Has this been approved? - - - - Has the delay period been approved by the data sharing committee for this project? - - - - What is the data release strategy for this study? - open - - - Are all the samples to be used in this study commercially available, unlinked anonymised cell-lines? - No - - - Do any of the samples in this study contain human DNA? - No - - - ENA Study Accession Number - ERP000608 - - - Title - Schistosoma mansoni methylome - - - Abstract - High throughput illumina sequencing of Schistosoma mansoni genomic DNA to identify methylated regions of the genome. - - - ENA Project ID - 0 - - - Study Type - Epigenetics - - - Faculty Sponsor - Matt Berriman - - - What sort of study is this? - other sequencing-based assay - - - Reference Genome - Schistosoma_mansoni (20100601) - - - diff --git a/t/data/st_api_lims_new/st/studies/1833.xml b/t/data/st_api_lims_new/st/studies/1833.xml deleted file mode 100644 index ee3cc168..00000000 --- a/t/data/st_api_lims_new/st/studies/1833.xml +++ /dev/null @@ -1,190 +0,0 @@ - - - 1833 - SEQCAP_Whole_Genome_Sequencing_of_Crohns_Disease_Patients - true - 86 - - - ak6 - ak6@sanger.ac.uk - Anja Kolb-Kokocinski - 224 - - - jr17 - jr17@sanger.ac.uk - Joshua Randall - 600 - - - mercury - mercury-sequencescape@hgi-mercury.internal.sanger.ac.uk - Mercury Human Genetics Informatics Pipelines - 638 - - - - - sarah - sarah - Sarah Sims - 137 - - - - - dw2 - dw2@sanger.ac.uk - Danielle Walker - 86 - - - - - 2011-05-17 11:32:34 +0100 - 2011-05-19 11:55:10 +0100 - - - Comment regarding data release timing and approval - - - - What is the data release strategy for this study? - managed - - - EGA Policy Accession Number - - - - ArrayExpress Accession Number - - - - Title - Whole genome sequencing of Crohn's disease patients - - - SNP study ID - - - - Comment regarding prevention of data release and approval - - - - EGA DAC Accession Number - - - - ENA Study Accession Number - EGAS00001000065 - - - HMDMC approval number - - - - Will you be using WTSI's standard access agreement? - Yes - - - Do any of the samples in this study contain human DNA? - Yes - - - ENA Project ID - - - - Has this been approved? - - - - Has the delay period been approved by the data sharing committee for this project? - - - - SNP parent study ID - - - - Alignments in BAM - true - - - Abstract - We propose to begin sequencing whole genomes from population CD samples in mid 2011, to be ramped up in the first year of the QQ. The aim is to identiy low frequency and rare variation which contributes to CD risk but is not easily detectable by GWAS. Thes sequences will be compared to UK10K and Cambridge BioResource controls. - - - Study description - Population based sequencing of whole genomes of Crohn's disease patients. - - - Policy - https://www.sanger.ac.uk/datasharing/ - - - Please explain the reason for delaying release (e.g., pre-existing collaborative agreement) - - - - Reason for delaying release - - - - Are all the samples to be used in this study commercially available, unlinked anonymised cell-lines? - No - - - Study Visibility - Hold - - - Does this study contain samples that are contaminated with human DNA which must be removed prior to analysis? - No - - - Delay for - - - - How is the data release to be timed? - standard - - - Does this study require the removal of X chromosome and autosome sequence? - No - - - Number of gigabases per sample (minimum 0.15) - - - - What is the reason for preventing data release? - - - - Study name abbreviation - SC_WGSC - - - Faculty Sponsor - Jeffrey Barrett - - - What sort of study is this? - genomic sequencing - - - Study Type - Whole Genome Sequencing - - - Reference Genome - Homo_sapiens (1000Genomes_hs37d5) - - - - diff --git a/t/data/st_api_lims_new/st/studies/198.xml b/t/data/st_api_lims_new/st/studies/198.xml deleted file mode 100644 index 88cbe0f2..00000000 --- a/t/data/st_api_lims_new/st/studies/198.xml +++ /dev/null @@ -1,165 +0,0 @@ - - - 198 - Illumina Controls - true - 83 - - - pc10 - pc10@sanger.ac.uk - Paul Coupland - 194 - - - - - hps - hps@sanger.ac.uk - Harold Swerdlow - 83 - - - - - hps - hps@sanger.ac.uk - Harold Swerdlow - 83 - - - - - 2008-11-13 13:27:48 +0000 - 2009-03-09 12:22:26 +0000 - - - SNP study ID - - - - What is the reason for preventing data release? - - - - ArrayExpress Accession Number - - - - Please explain the reason for delaying release (e.g., pre-existing collaborative agreement) - - - - Alignments in BAM - true - - - Reason for delaying release - - - - Comment regarding prevention of data release and approval - - - - How is the data release to be timed? - - - - Policy - - - - Study description - None - - - EGA Policy Accession Number - - - - Will you be using WTSI's standard access agreement? - - - - Study name abbreviation - - - - Does this study contain samples that are contaminated with human DNA which must be removed prior to analysis? - - - - Study Visibility - - - - Delay for - - - - SNP parent study ID - - - - Comment regarding data release timing and approval - - - - EGA DAC Accession Number - - - - Has this been approved? - - - - Has the delay period been approved by the data sharing committee for this project? - - - - What is the data release strategy for this study? - - - - Are all the samples to be used in this study commercially available, unlinked anonymised cell-lines? - No - - - Do any of the samples in this study contain human DNA? - - - - ENA Study Accession Number - - - - Title - - - - Abstract - - - - ENA Project ID - - - - Study Type - Not specified - - - Faculty Sponsor - None - - - What sort of study is this? - not specified - - - Reference Genome - - - - diff --git a/t/data/st_api_lims_new/st/studies/2278.xml b/t/data/st_api_lims_new/st/studies/2278.xml deleted file mode 100644 index c885bbff..00000000 --- a/t/data/st_api_lims_new/st/studies/2278.xml +++ /dev/null @@ -1,172 +0,0 @@ - - - 2278 - SEQCAP_WGS_Human_Evolution_3 - true - 86 - - - dw2 - dw2@sanger.ac.uk - Danielle Walker - 86 - - - - - cts - cts@sanger.ac.uk - Christopher Tyler-Smith - 533 - - - - - 2012-07-10 16:16:30 +0100 - 2012-08-07 15:29:30 +0100 - - - Comment regarding data release timing and approval - - - - What is the data release strategy for this study? - managed - - - EGA Policy Accession Number - - - - ArrayExpress Accession Number - - - - Title - Human Evolution 3 - - - SNP study ID - - - - Comment regarding prevention of data release and approval - - - - EGA DAC Accession Number - - - - ENA Study Accession Number - EGAS00001000315 - - - HMDMC approval number - 12/055 - - - Will you be using WTSI's standard access agreement? - Yes - - - Do any of the samples in this study contain human DNA? - Yes - - - ENA Project ID - 0 - - - Has this been approved? - - - - Has the delay period been approved by the data sharing committee for this project? - - - - SNP parent study ID - - - - Alignments in BAM - true - - - Abstract - According to current models of human expansion out of Africa around 60,000 years ago, there was an early divergence between the ancestors of Australian Aborigines on the one hand and the ancestors of Asians, Europeans and most other non-Africans on the other. Australian Aborigines are therefore of particular importance for understanding these early events, and the subsequent history of this branch of humanity. The project will sequence the mtDNA and Y chromosome of up to 15 Australian Aborigines, concentrating on individuals with indigenous lineages, to address these questions. - - - Study description - The mtDNA and Y chromosome of up to 15 Australian Aborigines, concentrating on individuals with indigenous lineages, will be sequenced using the standard whole-genome sequencing followed by filtering out of autosomal and X sequences, so that only mtDNA and the Y chromosome will be analysed and released. - - - Policy - The mtDNA and Y-chromosomal data will be submitted to EGA and are accessible under managed data access. Autosomal and X data must be filtered out and stored but not released. -https://www.sanger.ac.uk/datasharing/ - - - - Please explain the reason for delaying release (e.g., pre-existing collaborative agreement) - - - - Reason for delaying release - - - - Are all the samples to be used in this study commercially available, unlinked anonymised cell-lines? - No - - - Study Visibility - Hold - - - Does this study contain samples that are contaminated with human DNA which must be removed prior to analysis? - No - - - Delay for - - - - How is the data release to be timed? - standard - - - Does this study require the removal of X chromosome and autosome sequence? - Yes - - - Number of gigabases per sample (minimum 0.15) - - - - What is the reason for preventing data release? - - - - Study name abbreviation - SC_HE3 - - - Faculty Sponsor - Chris Tyler-Smith - - - What sort of study is this? - genomic sequencing - - - Study Type - Whole Genome Sequencing - - - Reference Genome - Homo_sapiens (1000Genomes_hs37d5) - - - - diff --git a/t/data/st_api_lims_new/st/studies/2693.xml b/t/data/st_api_lims_new/st/studies/2693.xml deleted file mode 100644 index 1d124757..00000000 --- a/t/data/st_api_lims_new/st/studies/2693.xml +++ /dev/null @@ -1,182 +0,0 @@ - - - 2693 - HiPSCI Pilot - true - 191 - - - ncb - ncb@sanger.ac.uk - Nathalie C Smerdon - 191 - - - - - jgb - jgb@sanger.ac.uk - Jose Garcia-Bernardo - 785 - - - - - 2013-07-10 09:31:38 +0100 - 2013-07-11 08:14:42 +0100 - - - Study description - HiPSCI Pilot - -This data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria), please see http://www.sanger.ac.uk/datasharing/ - - - - - - Does this study contain samples that are contaminated with human DNA which must be removed prior to analysis? - No - - - Does this study require the removal of X chromosome and autosome sequence? - No - - - Does this study require y chromosome data to be separated from x and autosomal data before archival? - true - - - ENA Project ID - - - - Abstract - R&D Work for HiPSCI project - - - Title - HiPSCI - - - ENA Study Accession Number - - - - Study Visibility - Hold - - - Do any of the samples in this study contain human DNA? - Yes - - - Are all the samples to be used in this study commercially available, unlinked anonymised cell-lines? - No - - - Study name abbreviation - - - - What is the data release strategy for this study? - not applicable - - - Will you be using WTSI's standard access agreement? - - - - How is the data release to be timed? - never - - - Reason for delaying release - - - - Delay for - - - - Alignments in BAM - true - - - Please explain the reason for delaying release - - - - Comment regarding data release timing and approval - - - - Policy Url - - - - Policy title - - - - EGA DAC Accession Number - - - - EGA Policy Accession Number - - - - ArrayExpress Accession Number - - - - Has the delay period been approved by the data sharing committee for this project? - - - - What is the reason for preventing data release? - data validity - - - Has this been approved? - Yes - - - Comment regarding prevention of data release and approval - Pilot - - - SNP study ID - - - - SNP parent study ID - - - - Number of gigabases per sample (minimum 0.15) - - - - HMDMC approval number - - - - Study Type - Epigenetics - - - What sort of study is this? - genotyping or cytogenetics - - - Reference Genome - Homo_sapiens (GRCh37_53) - - - Faculty Sponsor - Richard Durbin - - - diff --git a/t/data/st_api_lims_new/st/studies/292.xml b/t/data/st_api_lims_new/st/studies/292.xml deleted file mode 100644 index 4c65fd8f..00000000 --- a/t/data/st_api_lims_new/st/studies/292.xml +++ /dev/null @@ -1,177 +0,0 @@ - - - 292 - WTCCC Exon Resequencing - true - 129 - - - kp5 - kp5@sanger.ac.uk - Kimmo Palin - 158 - - - tpy - tpy@sanger.ac.uk - Tsun-Po Yang - 269 - - - kb1 - kb1@sanger.ac.uk - Karen McLaren - 24 - - - - - sarah - sarah - Sarah Sims - 137 - - - - - ajc - ajc@sanger.ac.uk - Alison J Coffey - 129 - - - - - 2009-04-16 17:58:19 +0100 - 2009-11-05 16:00:26 +0000 - - - SNP study ID - - - - What is the reason for preventing data release? - - - - ArrayExpress Accession Number - - - - Please explain the reason for delaying release (e.g., pre-existing collaborative agreement) - - - - Alignments in BAM - true - - - Reason for delaying release - - - - Comment regarding prevention of data release and approval - - - - How is the data release to be timed? - - - - Policy - - - - Study description - - - - EGA Policy Accession Number - - - - Will you be using WTSI's standard access agreement? - - - - Study name abbreviation - - - - Does this study contain samples that are contaminated with human DNA which must be removed prior to analysis? - - - - Study Visibility - Hold - - - Delay for - - - - SNP parent study ID - - - - Comment regarding data release timing and approval - - - - EGA DAC Accession Number - - - - Has this been approved? - - - - Has the delay period been approved by the data sharing committee for this project? - - - - What is the data release strategy for this study? - - - - Are all the samples to be used in this study commercially available, unlinked anonymised cell-lines? - No - - - Do any of the samples in this study contain human DNA? - - - - ENA Study Accession Number - - - - Title - - - - Abstract - - - - ENA Project ID - - - - Study Type - Not specified - - - Faculty Sponsor - None - - - What sort of study is this? - not specified - - - Reference Genome - - - - diff --git a/t/data/st_api_lims_new/st/studies/297.xml b/t/data/st_api_lims_new/st/studies/297.xml deleted file mode 100644 index 0bf214d4..00000000 --- a/t/data/st_api_lims_new/st/studies/297.xml +++ /dev/null @@ -1,189 +0,0 @@ - - - 297 - Discovery of sequence diversity in Shigella sp. - true - 206 - - - tfelt - tfelt@sanger.ac.uk - Theresa Feltwell - 112 - - - deh - deh@sanger.ac.uk - David Harris - 138 - - - tc7 - tc7@sanger.ac.uk - Thomas Connor - 475 - - - - - deh - deh@sanger.ac.uk - David Harris - 138 - - - jm15 - jm15@sanger.ac.uk - Jacqueline McQuillan - 67 - - - nds - nds@sanger.ac.uk - Nishadi De Silva - 383 - - - - - tfelt - tfelt@sanger.ac.uk - Theresa Feltwell - 112 - - - - - 2009-04-27 11:46:48 +0100 - 2010-09-09 14:27:54 +0100 - - - SNP study ID - - - - What is the reason for preventing data release? - - - - ArrayExpress Accession Number - - - - Please explain the reason for delaying release (e.g., pre-existing collaborative agreement) - - - - Alignments in BAM - true - - - Reason for delaying release - - - - Comment regarding prevention of data release and approval - - - - How is the data release to be timed? - standard - - - Policy - - - - Study description - For further information on this study please see http://www.sanger.ac.uk/resources/downloads/bacteria/shigella-sonnei.html This data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria), please see http://www.sanger.ac.uk/datasharing/ - - - EGA Policy Accession Number - - - - Will you be using WTSI's standard access agreement? - - - - Study name abbreviation - - - - Does this study contain samples that are contaminated with human DNA which must be removed prior to analysis? - No - - - Study Visibility - Hold - - - Delay for - - - - SNP parent study ID - - - - Comment regarding data release timing and approval - - - - EGA DAC Accession Number - - - - Has this been approved? - - - - Has the delay period been approved by the data sharing committee for this project? - - - - What is the data release strategy for this study? - open - - - Are all the samples to be used in this study commercially available, unlinked anonymised cell-lines? - No - - - Do any of the samples in this study contain human DNA? - No - - - ENA Study Accession Number - ERP000182 - - - Title - Discovery of sequence diversity in Shigella sp. - - - Abstract - For further information on this study please see http://www.sanger.ac.uk/resources/downloads/bacteria/shigella-sonnei.html - - - ENA Project ID - - - - Study Type - Whole Genome Sequencing - - - Faculty Sponsor - Julian Parkhill - - - What sort of study is this? - genomic sequencing - - - Reference Genome - - - - diff --git a/t/data/st_api_lims_new/st/studies/429.xml b/t/data/st_api_lims_new/st/studies/429.xml deleted file mode 100644 index 7cd17b72..00000000 --- a/t/data/st_api_lims_new/st/studies/429.xml +++ /dev/null @@ -1,157 +0,0 @@ - - - 429 - 3C and HiC of Plasmodium falciparum IT - true - 29 - - - mjs - mjs@sanger.ac.uk - Mandy Sanders - 29 - - - - - mjs - mjs@sanger.ac.uk - Mandy Sanders - 29 - - - - - 2010-01-11 15:14:58 +0000 - 2011-05-03 16:23:09 +0100 - - - SNP study ID - - - - What is the reason for preventing data release? - - - - ArrayExpress Accession Number - - - - Please explain the reason for delaying release (e.g., pre-existing collaborative agreement) - - - - Alignments in BAM - false - - - Reason for delaying release - - - - Comment regarding prevention of data release and approval - - - - How is the data release to be timed? - standard - - - Policy - - - - Study description - Illumina sequencing of chromatin conformation capture and its derivatives is being carried out to study nuclear architecture in antigenically selected lines of Plasmodium falciparum. This data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria), please see http://www.sanger.ac.uk/datasharing/ - - - EGA Policy Accession Number - - - - Will you be using WTSI's standard access agreement? - - - - Study name abbreviation - - - - Does this study contain samples that are contaminated with human DNA which must be removed prior to analysis? - No - - - Study Visibility - Hold - - - Delay for - - - - SNP parent study ID - - - - Comment regarding data release timing and approval - - - - EGA DAC Accession Number - - - - Has this been approved? - - - - Has the delay period been approved by the data sharing committee for this project? - - - - What is the data release strategy for this study? - open - - - Are all the samples to be used in this study commercially available, unlinked anonymised cell-lines? - No - - - Do any of the samples in this study contain human DNA? - No - - - ENA Study Accession Number - - - - Title - Genome-Wide Subnuclear Architecture in Antigenically Selected Lines of P.falciparum - - - Abstract - We have used chromatin conformation capture and its derivatives to study the nuclear architecture in lines of P.falciparum that express distinct variant antigens. Chemical crosslinking of cells followed by proximity based ligation and the subsequent enrichment of ligated junctions allows us to estimate contact probabilities for all genomic loci at a resolution of 10kB - 100kB. We evaluate these contact probabilities in the context of polymer folding models to deduce the scaling principles and folding architecture of interphase P. falciparum chromosomes. We consider evidence for spatial segregation of subtelomeric chromosomal territories involved in var gene expression as well as the anchoring of heterochromatic regions to the nuclear periphery. - - - ENA Project ID - 0 - - - Study Type - Epigenetics - - - Faculty Sponsor - Matt Berriman - - - What sort of study is this? - transcriptomics - - - Reference Genome - - - - diff --git a/t/data/st_api_lims_new/st/studies/700.xml b/t/data/st_api_lims_new/st/studies/700.xml deleted file mode 100644 index d56ad2a9..00000000 --- a/t/data/st_api_lims_new/st/studies/700.xml +++ /dev/null @@ -1,171 +0,0 @@ - - - 700 - Kapa HiFi test - true - 7 - - - mq1 - mq1@sanger.ac.uk - Michael Quail - 7 - - - ems - ems@sanger.ac.uk - Elizabeth Sheridan - 72 - - - - - mq1 - mq1@sanger.ac.uk - Michael Quail - 7 - - - - - 2010-10-07 16:11:00 +0100 - 2010-10-21 11:03:52 +0100 - - - SNP study ID - - - - What is the reason for preventing data release? - data validity - - - ArrayExpress Accession Number - - - - Please explain the reason for delaying release (e.g., pre-existing collaborative agreement) - - - - Alignments in BAM - true - - - Reason for delaying release - - - - Comment regarding prevention of data release and approval - Data generated is for testing of new methodology. These genomes have already been sequenced and so release would not serve any purpose - - - How is the data release to be timed? - never - - - Policy - - - - Study description - − I have agreed to alpha test the kapa hifi qPCR kit. This allows prep PCR to be followed in real time and stopped when sufficient product has accumulated so preventing overcycling and allowing user to interrogate prep PCR step. -− If we are to use this enzyme we need to know that it is at least as good as Phusion in terms of fidelity and coverage. -− In theory kapa hifi has higher fidelity than phusion. - - - - EGA Policy Accession Number - - - - Will you be using WTSI's standard access agreement? - Yes - - - Study name abbreviation - - - - Does this study contain samples that are contaminated with human DNA which must be removed prior to analysis? - No - - - Study Visibility - Hold - - - Delay for - - - - SNP parent study ID - - - - Comment regarding data release timing and approval - - - - EGA DAC Accession Number - - - - Has this been approved? - Yes - - - Has the delay period been approved by the data sharing committee for this project? - - - - What is the data release strategy for this study? - managed - - - Are all the samples to be used in this study commercially available, unlinked anonymised cell-lines? - No - - - Do any of the samples in this study contain human DNA? - No - - - ENA Study Accession Number - - - - Title - hifi test - - - Abstract - Purpose of experiment - -− To evaluate kapa hifi qPCR kit -− To evaluate kapa hifi and "robust" enzymes as alternatives to phusion. How do libraries prepared with these enzymes compare in terms of fidelity and coverage? -− To generate data on test genomes that can be used in Pacbio data analysis - - - - ENA Project ID - 0 - - - Study Type - Whole Genome Sequencing - - - Faculty Sponsor - Harold Swerdlow - - - What sort of study is this? - genomic sequencing - - - Reference Genome - - - - diff --git a/t/data/st_api_lims_new/st/studies/701.xml b/t/data/st_api_lims_new/st/studies/701.xml deleted file mode 100644 index a19371c2..00000000 --- a/t/data/st_api_lims_new/st/studies/701.xml +++ /dev/null @@ -1,224 +0,0 @@ - - - 701 - Kuusamo - true - 82 - - - ak6 - ak6@sanger.ac.uk - Anja Kolb-Kokocinski - 224 - - - elg - elg@sanger.ac.uk - Emma Gray - 236 - - - kp5 - kp5@sanger.ac.uk - Kimmo Palin - 158 - - - eh4 - eh4@sanger.ac.uk - Eija Hamalainen - 337 - - - tk2 - thomas.keane@sanger.ac.uk - Thomas Keane - 43 - - - - - jws - jws@sanger.ac.uk - James Stalker - 82 - - - sarah - sarah - Sarah Sims - 137 - - - ak6 - ak6@sanger.ac.uk - Anja Kolb-Kokocinski - 224 - - - - - rd - rd@sanger.ac.uk - Richard Durbin - 8 - - - - - 2010-10-08 12:27:10 +0100 - 2012-11-26 14:15:35 +0000 - - - Study description - The aim of this study is to characterize as completely as possible the genetic variation and structure of Kuusamo and surrounding regions. We will perform low coverage, whole genome sequencing in a relatively limited number (approximately 200) of individuals from the FINRISK study both of whose parents are born in Kuusamo, Posio or Taivalkoski. Sequencing will be performed at the Wellcome Trust Sanger Institute (WTSI). We have previously shown using simulations and genome wide SNP data that the genetic characteristics agree with known genealogical data, and that approximately 200 individuals suffice to capture the majority of the genetic variation in this population. - -We have also developed methods for long-range haplotyping and long-range imputation, which are more accurate than traditional methods. This will allow us to identify a majority of the founder haplotypes in this population. The information from the haplotypes identified in this study can be used in other studies to impute from genome-wide SNP data the full genome sequence of samples ascertained for specific phenotypes. - - - Does this study contain samples that are contaminated with human DNA which must be removed prior to analysis? - No - - - Does this study require the removal of X chromosome and autosome sequence? - No - - - Does this study require y chromosome data to be separated from x and autosomal data before archival? - false - - - ENA Project ID - 0 - - - Abstract - In this study, we aim to fully characterize a very high proportion of the genetic variation in a population. Information obtained from this study can be used by imputation in other studies aiming to identify genetic risk factors for disorders in the same population. It will also serve as a proof-of-principle study and allow method development for other similar projects in the future involving sequencing of other population isolates. - - - Title - Genetic variation in Kuusamo - - - ENA Study Accession Number - EGAS00001000020 - - - Study Visibility - Hold - - - Do any of the samples in this study contain human DNA? - Yes - - - Are all the samples to be used in this study commercially available, unlinked anonymised cell-lines? - No - - - Study name abbreviation - KUU - - - What is the data release strategy for this study? - managed - - - Will you be using WTSI's standard access agreement? - Yes - - - How is the data release to be timed? - standard - - - Reason for delaying release - - - - Delay for - - - - Alignments in BAM - false - - - Please explain the reason for delaying release - - - - Comment regarding data release timing and approval - - - - Policy Url - http://www.sanger.ac.uk/datasharing/ - - - Policy title - - - - EGA DAC Accession Number - EGAC00001000039 - - - EGA Policy Accession Number - EGAP00001000041 - - - ArrayExpress Accession Number - - - - Has the delay period been approved by the data sharing committee for this project? - - - - What is the reason for preventing data release? - - - - Has this been approved? - - - - Comment regarding prevention of data release and approval - - - - SNP study ID - - - - SNP parent study ID - - - - Number of gigabases per sample (minimum 0.15) - - - - HMDMC approval number - - - - Study Type - Population Genomics - - - What sort of study is this? - genomic sequencing - - - Reference Genome - Homo_sapiens (1000Genomes_hs37d5) - - - Faculty Sponsor - Richard Durbin - -Data access groupkuusamo - - diff --git a/t/data/tag_from_sample_description/st/batches/19158.xml b/t/data/tag_from_sample_description/st/batches/19158.xml deleted file mode 100644 index 6724bf6d..00000000 --- a/t/data/tag_from_sample_description/st/batches/19158.xml +++ /dev/null @@ -1,402 +0,0 @@ - - - 19158 - released - - - - - - 144 - CCTGAGCA - 6 - - - - - - 145 - CAGGCTAA - 6 - - - - - - 146 - CGGAGGAA - 6 - - - - - - 166 - AGGATTCA - 6 - - - - - - 167 - AACTGGCA - 6 - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - 144 - CCTGAGCA - 6 - - - - - - 145 - CAGGCTAA - 6 - - - - - - 146 - CGGAGGAA - 6 - - - - - - 166 - AGGATTCA - 6 - - - - - - 167 - AACTGGCA - 6 - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - 144 - CCTGAGCA - 6 - - - - - - 145 - CAGGCTAA - 6 - - - - - - 146 - CGGAGGAA - 6 - - - - - - 166 - AGGATTCA - 6 - - - - - - 167 - AACTGGCA - 6 - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - 144 - CCTGAGCA - 6 - - - - - - 145 - CAGGCTAA - 6 - - - - - - 146 - CGGAGGAA - 6 - - - - - - 166 - AGGATTCA - 6 - - - - - - 167 - AACTGGCA - 6 - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - 12 - CTTGTACT - 6 - - - - - - 13 - TGGTTGTT - 6 - - - - - - 14 - TCTCGGTT - 6 - - - - - - 15 - TAAGCGTT - 6 - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - 1 - ATCACGTT - 6 - - - - - - 2 - CGATGTTT - 6 - - - - - - 3 - TTAGGCAT - 6 - - - - - - 4 - TGACCACT - 6 - - - - - - 5 - ACAGTGGT - 6 - - - - - - 6 - GCCAATGT - 6 - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - 1 - ATCACGTT - 6 - - - - - - 2 - CGATGTTT - 6 - - - - - - 3 - TTAGGCAT - 6 - - - - - - 4 - TGACCACT - 6 - - - - - - 5 - ACAGTGGT - 6 - - - - - - 6 - GCCAATGT - 6 - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - diff --git a/t/data/tag_from_sample_description/st/samples/1255141.xml b/t/data/tag_from_sample_description/st/samples/1255141.xml deleted file mode 100644 index 9dddf578..00000000 --- a/t/data/tag_from_sample_description/st/samples/1255141.xml +++ /dev/null @@ -1,2089 +0,0 @@ - - - 1255141 - phiX_for_spiked_buffers - false - - - Organism - - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - - - - Gender - - - - DNA source - - - - Public Name - - - - Common Name - - - - Strain - - - - TAXON ID - - - - ENA Sample Accession Number - - - - Sample Description - - - - Sample Visibility - - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 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- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - diff --git a/t/data/tag_from_sample_description/st/samples/1448208.xml b/t/data/tag_from_sample_description/st/samples/1448208.xml deleted file mode 100644 index 6829979a..00000000 --- a/t/data/tag_from_sample_description/st/samples/1448208.xml +++ /dev/null @@ -1,244 +0,0 @@ - - - 1448208 - PD9924c_rs - 2236 - false - - - Organism - Human - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - - - - DNA source - Genomic - - - Public Name - PD9924c - - - Common Name - Homo sapiens - - - Strain - - - - TAXON ID - 9606 - - - ENA Sample Accession Number - EGAN00001072683 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 2236 - diff --git a/t/data/tag_from_sample_description/st/samples/1448209.xml b/t/data/tag_from_sample_description/st/samples/1448209.xml deleted file mode 100644 index cfce1728..00000000 --- a/t/data/tag_from_sample_description/st/samples/1448209.xml +++ /dev/null @@ -1,244 +0,0 @@ - - - 1448209 - PD9925c_rs - 2236 - false - - - Organism - Human - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - - - - DNA source - Genomic - - - Public Name - PD9925c - - - Common Name - Homo sapiens - - - Strain - - - - TAXON ID - 9606 - - - ENA Sample Accession Number - EGAN00001072684 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 2236 - diff --git a/t/data/tag_from_sample_description/st/samples/1448210.xml b/t/data/tag_from_sample_description/st/samples/1448210.xml deleted file mode 100644 index ad840cc7..00000000 --- a/t/data/tag_from_sample_description/st/samples/1448210.xml +++ /dev/null @@ -1,244 +0,0 @@ - - - 1448210 - PD9926c_rs - 2236 - false - - - Organism - Human - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - - - - DNA source - Genomic - - - Public Name - PD9926c - - - Common Name - Homo sapiens - - - Strain - - - - TAXON ID - 9606 - - - ENA Sample Accession Number - EGAN00001072685 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 2236 - diff --git a/t/data/tag_from_sample_description/st/samples/1448211.xml b/t/data/tag_from_sample_description/st/samples/1448211.xml deleted file mode 100644 index 1e934489..00000000 --- a/t/data/tag_from_sample_description/st/samples/1448211.xml +++ /dev/null @@ -1,244 +0,0 @@ - - - 1448211 - PD9927c_rs - 2236 - false - - - Organism - Human - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - - - - DNA source - Genomic - - - Public Name - PD9927c - - - Common Name - Homo sapiens - - - Strain - - - - TAXON ID - 9606 - - - ENA Sample Accession Number - EGAN00001072686 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 2236 - diff --git a/t/data/tag_from_sample_description/st/samples/1448212.xml b/t/data/tag_from_sample_description/st/samples/1448212.xml deleted file mode 100644 index f40420a0..00000000 --- a/t/data/tag_from_sample_description/st/samples/1448212.xml +++ /dev/null @@ -1,244 +0,0 @@ - - - 1448212 - PD9928c_rs - 2236 - false - - - Organism - Human - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - - - - DNA source - Genomic - - - Public Name - PD9928c - - - Common Name - Homo sapiens - - - Strain - - - - TAXON ID - 9606 - - - ENA Sample Accession Number - EGAN00001072687 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 2236 - diff --git a/t/data/tag_from_sample_description/st/samples/1503349.xml b/t/data/tag_from_sample_description/st/samples/1503349.xml deleted file mode 100644 index 5c1fafcf..00000000 --- a/t/data/tag_from_sample_description/st/samples/1503349.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1503349 - dag1_mut1 - 82 - false - - - Organism - zebrafish - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Unknown - - - DNA source - Genomic - - - Public Name - Zebrafish dag1 mut1 - - - Common Name - Danio rerio - - - Strain - mixed - - - TAXON ID - 7955 - - - ENA Sample Accession Number - ERS183150 - - - Sample Description - 3' end enriched mRNA from morphologically abnormal embryos from dag1 knockout incross 1. A 6 base indexing sequence (TAGACA) is bases 5 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_phD - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - N/A - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - Hatching - day 2 ZFS:0000033 - - - Cell Type - N/A - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - N/A - - - RNAi - - - - Organism Part - Whole Embryo - - - Time Point - N/A - - - Treatment - N/A - - - Subject - - - - Disease - N/A - - - Reference Genome - Danio_rerio (zv9) - - - - - - - - - - - 82 - - diff --git a/t/data/tag_from_sample_description/st/samples/1503350.xml b/t/data/tag_from_sample_description/st/samples/1503350.xml deleted file mode 100644 index f38d4301..00000000 --- a/t/data/tag_from_sample_description/st/samples/1503350.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1503350 - dag1_wt1 - 82 - false - - - Organism - zebrafish - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Unknown - - - DNA source - Genomic - - - Public Name - Zebrafish dag1 wt1 - - - Common Name - Danio rerio - - - Strain - mixed - - - TAXON ID - 7955 - - - ENA Sample Accession Number - ERS183151 - - - Sample Description - 3' end enriched mRNA from morphologically normal sibling embryos from dag1 knockout incross 1. A 6 base indexing sequence (CTACCA) is bases 5 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_phD - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - N/A - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - Hatching - day 2 ZFS:0000033 - - - Cell Type - N/A - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - N/A - - - RNAi - - - - Organism Part - Whole Embryo - - - Time Point - N/A - - - Treatment - N/A - - - Subject - - - - Disease - N/A - - - Reference Genome - Danio_rerio (zv9) - - - - - - - - - - - 82 - - diff --git a/t/data/tag_from_sample_description/st/samples/1503351.xml b/t/data/tag_from_sample_description/st/samples/1503351.xml deleted file mode 100644 index 57a50012..00000000 --- a/t/data/tag_from_sample_description/st/samples/1503351.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1503351 - dag1_mut2 - 82 - false - - - Organism - zebrafish - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Unknown - - - DNA source - Genomic - - - Public Name - Zebrafish dag1 mut2 - - - Common Name - Danio rerio - - - Strain - mixed - - - TAXON ID - 7955 - - - ENA Sample Accession Number - ERS183152 - - - Sample Description - 3' end enriched mRNA from morphologically abnormal embryos from dag1 knockout incross 2. A 6 base indexing sequence (TATCTA) is bases 5 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_phD - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - N/A - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - Hatching - day 2 ZFS:0000033 - - - Cell Type - N/A - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - N/A - - - RNAi - - - - Organism Part - Whole Embryo - - - Time Point - N/A - - - Treatment - N/A - - - Subject - - - - Disease - N/A - - - Reference Genome - Danio_rerio (zv9) - - - - - - - - - - - 82 - - diff --git a/t/data/tag_from_sample_description/st/samples/1503352.xml b/t/data/tag_from_sample_description/st/samples/1503352.xml deleted file mode 100644 index 57a50012..00000000 --- a/t/data/tag_from_sample_description/st/samples/1503352.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1503351 - dag1_mut2 - 82 - false - - - Organism - zebrafish - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Unknown - - - DNA source - Genomic - - - Public Name - Zebrafish dag1 mut2 - - - Common Name - Danio rerio - - - Strain - mixed - - - TAXON ID - 7955 - - - ENA Sample Accession Number - ERS183152 - - - Sample Description - 3' end enriched mRNA from morphologically abnormal embryos from dag1 knockout incross 2. A 6 base indexing sequence (TATCTA) is bases 5 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_phD - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - N/A - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - Hatching - day 2 ZFS:0000033 - - - Cell Type - N/A - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - N/A - - - RNAi - - - - Organism Part - Whole Embryo - - - Time Point - N/A - - - Treatment - N/A - - - Subject - - - - Disease - N/A - - - Reference Genome - Danio_rerio (zv9) - - - - - - - - - - - 82 - - diff --git a/t/data/tag_from_sample_description/st/samples/1503353.xml b/t/data/tag_from_sample_description/st/samples/1503353.xml deleted file mode 100644 index b37543cf..00000000 --- a/t/data/tag_from_sample_description/st/samples/1503353.xml +++ /dev/null @@ -1,210 +0,0 @@ - - - 1503353 - dag1_mut3 - 82 - false - - - Organism - zebrafish - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Unknown - - - DNA source - Genomic - - - Public Name - Zebrafish dag1 mut3 - - - Common Name - Danio rerio - - - Strain - mixed - - - TAXON ID - 7955 - - - ENA Sample Accession Number - ERS183154 - - - Sample Description - 3' end enriched mRNA from morphologically abnormal embryos from dag1 knockout incross 3. A 6 base indexing sequence (GTAGAC) is bases 5 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_phD - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - N/A - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - Hatching - day 2 ZFS:0000033 - - - Cell Type - N/A - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - N/A - - - RNAi - - - - Organism Part - Whole Embryo - - - Time Point - N/A - - - Treatment - N/A - - - Subject - - - - Disease - N/A - - - Reference Genome - Danio_rerio (zv9) - - - - - - - - - - - 82 - diff --git a/t/data/tag_from_sample_description/st/samples/1503354.xml b/t/data/tag_from_sample_description/st/samples/1503354.xml deleted file mode 100644 index da0019bd..00000000 --- a/t/data/tag_from_sample_description/st/samples/1503354.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 1503354 - dag1_wt3 - 82 - false - - - Organism - zebrafish - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Unknown - - - DNA source - Genomic - - - Public Name - Zebrafish dag1 wt3 - - - Common Name - Danio rerio - - - Strain - mixed - - - TAXON ID - 7955 - - - ENA Sample Accession Number - ERS183155 - - - Sample Description - 3' end enriched mRNA from morphologically normal sibling embryos from dag1 knockout incross 3. A 6 base indexing sequence (TTAATC) is bases 5 to 10 of read 1 followed by polyT. More information describing the mutant phenotype can be found at the Wellcome Trust Sanger Institute Zebrafish Mutation Project website http://www.sanger.ac.uk/cgi-bin/Projects/D_rerio/zmp/search.pl?q=zmp_phD - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - N/A - - - Phenotype - N/A - - - Age - N/A - - - Developmental Stage - Hatching - day 2 ZFS:0000033 - - - Cell Type - N/A - - - Disease State - N/A - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - N/A - - - RNAi - - - - Organism Part - Whole Embryo - - - Time Point - N/A - - - Treatment - N/A - - - Subject - - - - Disease - N/A - - - Reference Genome - Danio_rerio (zv9) - - - - - - - - - - - 82 - - diff --git a/t/data/test40_lims_edited/st/batches/14706.xml b/t/data/test40_lims_edited/st/batches/14706.xml deleted file mode 100644 index 505563bc..00000000 --- a/t/data/test40_lims_edited/st/batches/14706.xml +++ /dev/null @@ -1,321 +0,0 @@ - - - 14706 - released - - - - - - 1 - TAGCTTGT - 5 - - - - - - 2 - CGATGTTT - 5 - - - - - - 3 - GCCAATGT - 5 - - - - - - 4 - ACAGTGGT - 5 - - - - - - 5 - ATCACGTT - 5 - - - - - - - - - - 1 - TAGCTTGT - 5 - - - - - - 2 - CGATGTTT - 5 - - - - - - 3 - GCCAATGT - 5 - - - - - - 4 - ACAGTGGT - 5 - - - - - - 5 - ATCACGTT - 5 - - - - - - - - - - 1 - TAGCTTGT - 5 - - - - - - 2 - CGATGTTT - 5 - - - - - - 3 - GCCAATGT - 5 - - - - - - 4 - ACAGTGGT - 5 - - - - - - 5 - ATCACGTT - 5 - - - - - - - - - - - - - - - - 1 - TAGCTTGT - 5 - - - - - - 2 - CGATGTTT - 5 - - - - - - 3 - GCCAATGT - 5 - - - - - - 4 - ACAGTGGT - 5 - - - - - - 5 - ATCACGTT - 5 - - - - - - - - - - 1 - TAGCTTGT - 5 - - - - - - 2 - CGATGTTT - 5 - - - - - - 3 - GCCAATGT - 5 - - - - - - 4 - ACAGTGGT - 5 - - - - - - 5 - ATCACGTT - 5 - - - - - - - - - - 1 - TAGCTTGT - 5 - - - - - - 2 - CGATGTTT - 5 - - - - - - 3 - GCCAATGT - 5 - - - - - - 4 - ACAGTGGT - 5 - - - - - - 5 - ATCACGTT - 5 - - - - - - - - - - 1 - TAGCTTGT - 5 - - - - - - 2 - CGATGTTT - 5 - - - - - - 3 - GCCAATGT - 5 - - - - - - 4 - ACAGTGGT - 5 - - - - - - 5 - ATCACGTT - 5 - - - - - - - diff --git a/t/data/test40_lims_edited/st/batches/4775.xml b/t/data/test40_lims_edited/st/batches/4775.xml deleted file mode 100644 index 7c928e9e..00000000 --- a/t/data/test40_lims_edited/st/batches/4775.xml +++ /dev/null @@ -1,101 +0,0 @@ - - - 4775 - released - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1 - ATCACGTTAT - 7 - - - - - - 2 - CGATGTTTAT - 7 - - - - - - 3 - TTAGGCATAT - 7 - - - - - - - - - - 1 - ATCACGTTAT - 7 - - - - - 2 - CGATGTTTAT - 7 - - - - - - 3 - TTAGGCATAT - 7 - - - - - - diff --git a/t/data/test40_lims_edited/st/samples/1093818.xml b/t/data/test40_lims_edited/st/samples/1093818.xml deleted file mode 100644 index 89b3cc38..00000000 --- a/t/data/test40_lims_edited/st/samples/1093818.xml +++ /dev/null @@ -1,210 +0,0 @@ - - - 1093818 - SS109305 - 297 - false - - - Organism - Shigella sonnei - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - SS109305 - - - Common Name - Shigella sonnei - - - Strain - 109305 - - - TAXON ID - 624 - - - ENA Sample Accession Number - ERS024591 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 297 - diff --git a/t/data/test40_lims_edited/st/samples/1093819.xml b/t/data/test40_lims_edited/st/samples/1093819.xml deleted file mode 100644 index c357a72c..00000000 --- a/t/data/test40_lims_edited/st/samples/1093819.xml +++ /dev/null @@ -1,210 +0,0 @@ - - - 1093819 - SS109114 - 297 - false - - - Organism - Shigella sonnei - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - SS109114 - - - Common Name - Shigella sonnei - - - Strain - 109114 - - - TAXON ID - 624 - - - ENA Sample Accession Number - ERS024592 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 297 - diff --git a/t/data/test40_lims_edited/st/samples/1093820.xml b/t/data/test40_lims_edited/st/samples/1093820.xml deleted file mode 100644 index c855037c..00000000 --- a/t/data/test40_lims_edited/st/samples/1093820.xml +++ /dev/null @@ -1,210 +0,0 @@ - - - 1093820 - SS117886 - 297 - false - - - Organism - Shigella sonnei - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - SS117886 - - - Common Name - Shigella sonnei - - - Strain - 117886 - - - TAXON ID - 624 - - - ENA Sample Accession Number - ERS024593 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - 297 - diff --git a/t/data/test40_lims_edited/st/samples/1296986.xml b/t/data/test40_lims_edited/st/samples/1296986.xml deleted file mode 100644 index d6f99f2f..00000000 --- a/t/data/test40_lims_edited/st/samples/1296986.xml +++ /dev/null @@ -1,205 +0,0 @@ - - - 1296986 - 5_SB-induced_tumour_1 - 2012 - false - - - Organism - mouse - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - 5' SB-induced tumour 1 - - - Common Name - Mus Musculus - - - Strain - - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS069770 - - - Sample Description - transposon-induced tumour - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - N/A - - - Phenotype - cancer - - - Age - N/A - - - Developmental Stage - N/A - - - Cell Type - N/A - - - Disease State - diseased - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - N/A - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - cancer - - - Reference Genome - Mus_musculus (std_unmasked_NCBIm37) - - - - - - 2012 - diff --git a/t/data/test40_lims_edited/st/samples/1296987.xml b/t/data/test40_lims_edited/st/samples/1296987.xml deleted file mode 100644 index 2ea00caa..00000000 --- a/t/data/test40_lims_edited/st/samples/1296987.xml +++ /dev/null @@ -1,205 +0,0 @@ - - - 1296987 - 5_SB-induced_tumour_2 - 2012 - false - - - Organism - mouse - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - 5' SB-induced tumour 2 - - - Common Name - Mus Musculus - - - Strain - - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS069771 - - - Sample Description - transposon-induced tumour - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - N/A - - - Phenotype - cancer - - - Age - N/A - - - Developmental Stage - N/A - - - Cell Type - N/A - - - Disease State - diseased - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - N/A - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - cancer - - - Reference Genome - Mus_musculus (std_unmasked_NCBIm37) - - - - - - 2012 - diff --git a/t/data/test40_lims_edited/st/samples/1296988.xml b/t/data/test40_lims_edited/st/samples/1296988.xml deleted file mode 100644 index 9efb62b4..00000000 --- a/t/data/test40_lims_edited/st/samples/1296988.xml +++ /dev/null @@ -1,205 +0,0 @@ - - - 1296988 - 5_SB-induced_tumour_3 - 2012 - false - - - Organism - mouse - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - 5' SB-induced tumour 3 - - - Common Name - Mus Musculus - - - Strain - - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS069772 - - - Sample Description - transposon-induced tumour - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - N/A - - - Phenotype - cancer - - - Age - N/A - - - Developmental Stage - N/A - - - Cell Type - N/A - - - Disease State - diseased - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - N/A - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - cancer - - - Reference Genome - Mus_musculus (std_unmasked_NCBIm37) - - - - - - 2012 - diff --git a/t/data/test40_lims_edited/st/samples/1296989.xml b/t/data/test40_lims_edited/st/samples/1296989.xml deleted file mode 100644 index bd3e2da6..00000000 --- a/t/data/test40_lims_edited/st/samples/1296989.xml +++ /dev/null @@ -1,205 +0,0 @@ - - - 1296989 - 5_SB-induced_tumour_4 - 2012 - false - - - Organism - mouse - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - 5' SB-induced tumour 4 - - - Common Name - Mus Musculus - - - Strain - - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS069773 - - - Sample Description - transposon-induced tumour - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - N/A - - - Phenotype - cancer - - - Age - N/A - - - Developmental Stage - N/A - - - Cell Type - N/A - - - Disease State - diseased - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - N/A - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - cancer - - - Reference Genome - Mus_musculus (std_unmasked_NCBIm37) - - - - - - 2012 - diff --git a/t/data/test40_lims_edited/st/samples/1296990.xml b/t/data/test40_lims_edited/st/samples/1296990.xml deleted file mode 100644 index 11f80067..00000000 --- a/t/data/test40_lims_edited/st/samples/1296990.xml +++ /dev/null @@ -1,205 +0,0 @@ - - - 1296990 - 5_SB-induced_tumour_5 - 2012 - false - - - Organism - mouse - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - Neutral - - - Gender - Not Applicable - - - DNA source - Genomic - - - Public Name - 5' SB-induced tumour 5 - - - Common Name - Mus Musculus - - - Strain - - - - TAXON ID - 10090 - - - ENA Sample Accession Number - ERS069774 - - - Sample Description - transposon-induced tumour - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - N/A - - - Phenotype - cancer - - - Age - N/A - - - Developmental Stage - N/A - - - Cell Type - N/A - - - Disease State - diseased - - - Compound - N/A - - - Dose - N/A - - - Immunoprecipitate - N/A - - - Growth Condition - N/A - - - RNAi - N/A - - - Organism Part - N/A - - - Time Point - N/A - - - Treatment - N/A - - - Subject - N/A - - - Disease - cancer - - - Reference Genome - Mus_musculus (std_unmasked_NCBIm37) - - - - - - 2012 - diff --git a/t/data/test45/st/batches/13994.xml b/t/data/test45/st/batches/13994.xml deleted file mode 100644 index 31a7381c..00000000 --- a/t/data/test45/st/batches/13994.xml +++ /dev/null @@ -1,107 +0,0 @@ - - - 13994 - released - - - - - - 1 - ATCACGTT - 6 - - - - - - 2 - CGATGTTT - 6 - - - - - - 3 - TTAGGCAT - 6 - - - - - - 4 - TGACCACT - 6 - - - - - - 5 - ACAGTGGT - 6 - - - - - - 6 - GCCAATGT - 6 - - - - - - 7 - CAGATCTG - 6 - - - - - - 8 - ACTTGATG - 6 - - - - - - 9 - GATCAGCG - 6 - - - - - - 10 - TAGCTTGT - 6 - - - - - - 11 - GGCTACAG - 6 - - - - - - 12 - CTTGTACT - 6 - - - - - - - diff --git a/t/data/test45/st/batches/15728.xml b/t/data/test45/st/batches/15728.xml deleted file mode 100644 index 3e742129..00000000 --- a/t/data/test45/st/batches/15728.xml +++ /dev/null @@ -1,815 +0,0 @@ - - - 15728 - released - - - - - - 1 - ATCACG - 3 - - - DDD custom library - - - - - - 2 - CGATGT - 3 - - - DDD custom library - - - - - - 3 - TTAGGC - 3 - - - DDD custom library - - - - - - 4 - TGACCA - 3 - - - DDD custom library - - - - - - 5 - ACAGTG - 3 - - - DDD custom library - - - - - - 6 - GCCAAT - 3 - - - DDD custom library - - - - - - 7 - CAGATC - 3 - - - DDD custom library - - - - - - 8 - ACTTGA - 3 - - - DDD custom library - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - 1 - ATCACG - 3 - - - DDD custom library - - - - - - 2 - CGATGT - 3 - - - DDD custom library - - - - - - 3 - TTAGGC - 3 - - - DDD custom library - - - - - - 4 - TGACCA - 3 - - - DDD custom library - - - - - - 5 - ACAGTG - 3 - - - DDD custom library - - - - - - 6 - GCCAAT - 3 - - - DDD custom library - - - - - - 7 - CAGATC - 3 - - - DDD custom library - - - - - - 8 - ACTTGA - 3 - - - DDD custom library - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - 1 - ATCACG - 3 - - - DDD custom library - - - - - - 2 - CGATGT - 3 - - - DDD custom library - - - - - - 3 - TTAGGC - 3 - - - DDD custom library - - - - - - 4 - TGACCA - 3 - - - DDD custom library - - - - - - 5 - ACAGTG - 3 - - - DDD custom library - - - - - - 6 - GCCAAT - 3 - - - DDD custom library - - - - - - 7 - CAGATC - 3 - - - DDD custom library - - - - - - 8 - ACTTGA - 3 - - - DDD custom library - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - 1 - ATCACG - 3 - - - DDD custom library - - - - - - 2 - CGATGT - 3 - - - DDD custom library - - - - - - 3 - TTAGGC - 3 - - - DDD custom library - - - - - - 4 - TGACCA - 3 - - - DDD custom library - - - - - - 5 - ACAGTG - 3 - - - DDD custom library - - - - - - 6 - GCCAAT - 3 - - - DDD custom library - - - - - - 7 - CAGATC - 3 - - - DDD custom library - - - - - - 8 - ACTTGA - 3 - - - DDD custom library - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - 1 - ATCACG - 3 - - - DDD custom library - - - - - - 2 - CGATGT - 3 - - - DDD custom library - - - - - - 3 - TTAGGC - 3 - - - DDD custom library - - - - - - 4 - TGACCA - 3 - - - DDD custom library - - - - - - 5 - ACAGTG - 3 - - - DDD custom library - - - - - - 6 - GCCAAT - 3 - - - DDD custom library - - - - - - 7 - CAGATC - 3 - - - DDD custom library - - - - - - 8 - ACTTGA - 3 - - - DDD custom library - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - 1 - ATCACG - 3 - - - DDD custom library - - - - - - 2 - CGATGT - 3 - - - DDD custom library - - - - - - 3 - TTAGGC - 3 - - - DDD custom library - - - - - - 4 - TGACCA - 3 - - - DDD custom library - - - - - - 5 - ACAGTG - 3 - - - DDD custom library - - - - - - 6 - GCCAAT - 3 - - - DDD custom library - - - - - - 7 - CAGATC - 3 - - - DDD custom library - - - - - - 8 - ACTTGA - 3 - - - DDD custom library - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - 1 - ATCACG - 3 - - - DDD custom library - - - - - - 2 - CGATGT - 3 - - - DDD custom library - - - - - - 3 - TTAGGC - 3 - - - DDD custom library - - - - - - 4 - TGACCA - 3 - - - DDD custom library - - - - - - 5 - ACAGTG - 3 - - - DDD custom library - - - - - - 6 - GCCAAT - 3 - - - DDD custom library - - - - - - 7 - CAGATC - 3 - - - DDD custom library - - - - - - 8 - ACTTGA - 3 - - - DDD custom library - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - 1 - ATCACG - 3 - - - DDD custom library - - - - - - 2 - CGATGT - 3 - - - DDD custom library - - - - - - 3 - TTAGGC - 3 - - - DDD custom library - - - - - - 4 - TGACCA - 3 - - - DDD custom library - - - - - - 5 - ACAGTG - 3 - - - DDD custom library - - - - - - 6 - GCCAAT - 3 - - - DDD custom library - - - - - - 7 - CAGATC - 3 - - - DDD custom library - - - - - - 8 - ACTTGA - 3 - - - DDD custom library - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - \ No newline at end of file diff --git a/t/data/test45/st/batches/16249.xml b/t/data/test45/st/batches/16249.xml deleted file mode 100644 index 41e34c1a..00000000 --- a/t/data/test45/st/batches/16249.xml +++ /dev/null @@ -1,771 +0,0 @@ - - - 16249 - released - - - - - - 1 - ATCACG - 3 - - - Human all exon 50MB - - - - - - 2 - CGATGT - 3 - - - Human all exon 50MB - - - - - - 3 - TTAGGC - 3 - - - Human all exon 50MB - - - - - - 4 - TGACCA - 3 - - - Human all exon 50MB - - - - - - 5 - ACAGTG - 3 - - - Human all exon 50MB - - - - - - 6 - GCCAAT - 3 - - - Human all exon 50MB - - - - - - 7 - CAGATC - 3 - - - Human all exon 50MB - - - - - - 8 - ACTTGA - 3 - - - Human all exon 50MB - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - 1 - ATCACG - 3 - - - Human all exon 50MB - - - - - - 2 - CGATGT - 3 - - - Human all exon 50MB - - - - - - 3 - TTAGGC - 3 - - - Human all exon 50MB - - - - - - 4 - TGACCA - 3 - - - Human all exon 50MB - - - - - - 5 - ACAGTG - 3 - - - Human all exon 50MB - - - - - - 6 - GCCAAT - 3 - - - Human all exon 50MB - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - 1 - ATCACG - 3 - - - Human all exon 50MB - - - - - - 2 - CGATGT - 3 - - - Human all exon 50MB - - - - - - 3 - TTAGGC - 3 - - - Human all exon 50MB - - - - - - 4 - TGACCA - 3 - - - Human all exon 50MB - - - - - - 5 - ACAGTG - 3 - - - Human all exon 50MB - - - - - - 6 - GCCAAT - 3 - - - Human all exon 50MB - - - - - - 7 - CAGATC - 3 - - - Human all exon 50MB - - - - - - 8 - ACTTGA - 3 - - - Human all exon 50MB - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - 1 - ATCACG - 3 - - - Human all exon 50MB - - - - - - 2 - CGATGT - 3 - - - Human all exon 50MB - - - - - - 3 - TTAGGC - 3 - - - Human all exon 50MB - - - - - - 4 - TGACCA - 3 - - - Human all exon 50MB - - - - - - 5 - ACAGTG - 3 - - - Human all exon 50MB - - - - - - 6 - GCCAAT - 3 - - - Human all exon 50MB - - - - - - 7 - CAGATC - 3 - - - Human all exon 50MB - - - - - - 8 - ACTTGA - 3 - - - Human all exon 50MB - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - 1 - ATCACG - 3 - - - Human all exon 50MB - - - - - - 2 - CGATGT - 3 - - - Human all exon 50MB - - - - - - 3 - TTAGGC - 3 - - - Human all exon 50MB - - - - - - 4 - TGACCA - 3 - - - Human all exon 50MB - - - - - - 5 - ACAGTG - 3 - - - Human all exon 50MB - - - - - - 6 - GCCAAT - 3 - - - Human all exon 50MB - - - - - - 7 - CAGATC - 3 - - - Human all exon 50MB - - - - - - 8 - ACTTGA - 3 - - - Human all exon 50MB - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - 1 - ATCACG - 3 - - - Human all exon 50MB - - - - - - 2 - CGATGT - 3 - - - Human all exon 50MB - - - - - - 3 - TTAGGC - 3 - - - Human all exon 50MB - - - - - - 4 - TGACCA - 3 - - - Human all exon 50MB - - - - - - 6 - GCCAAT - 3 - - - Human all exon 50MB - - - - - - 7 - CAGATC - 3 - - - Human all exon 50MB - - - - - - 8 - ACTTGA - 3 - - - Human all exon 50MB - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - 1 - ATCACG - 3 - - - Human all exon 50MB - - - - - - 2 - CGATGT - 3 - - - Human all exon 50MB - - - - - - 3 - TTAGGC - 3 - - - Human all exon 50MB - - - - - - 4 - TGACCA - 3 - - - Human all exon 50MB - - - - - - 5 - ACAGTG - 3 - - - Human all exon 50MB - - - - - - 6 - GCCAAT - 3 - - - Human all exon 50MB - - - - - - 7 - CAGATC - 3 - - - Human all exon 50MB - - - - - - 8 - ACTTGA - 3 - - - Human all exon 50MB - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - - - - 2 - CGATGT - 3 - - - Human all exon 50MB - - - - - - 3 - TTAGGC - 3 - - - Human all exon 50MB - - - - - - 4 - TGACCA - 3 - - - Human all exon 50MB - - - - - - 5 - ACAGTG - 3 - - - Human all exon 50MB - - - - - - 6 - GCCAAT - 3 - - - Human all exon 50MB - - - - - - 7 - CAGATC - 3 - - - Human all exon 50MB - - - - - - 8 - ACTTGA - 3 - - - Human all exon 50MB - - - - - - - - 168 - ACAACGCAAT - 6 - - - - - - diff --git a/t/data/test45/st/batches/4775.xml b/t/data/test45/st/batches/4775.xml deleted file mode 100644 index 0712a6df..00000000 --- a/t/data/test45/st/batches/4775.xml +++ /dev/null @@ -1,62 +0,0 @@ - - - 4775 - released - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - diff --git a/t/data/test45/st/batches/4861.xml b/t/data/test45/st/batches/4861.xml deleted file mode 100644 index 8fdd3968..00000000 --- a/t/data/test45/st/batches/4861.xml +++ /dev/null @@ -1,617 +0,0 @@ - - - 4861 - released - - - - - - 1 - ATCACG - 3 - - - - - - 2 - CGATGT - 3 - - - - - - 3 - TTAGGC - 3 - - - - - - 4 - TGACCA - 3 - - - - - - 5 - ACAGTG - 3 - - - - - - 6 - GCCAAT - 3 - - - - - - 7 - CAGATC - 3 - - - - - - 8 - ACTTGA - 3 - - - - - - 9 - GATCAG - 3 - - - - - - 10 - TAGCTT - 3 - - - - - - 11 - GGCTAC - 3 - - - - - - - - - - 1 - ATCACG - 3 - - - - - - 2 - CGATGT - 3 - - - - - - 3 - TTAGGC - 3 - - - - - - 4 - TGACCA - 3 - - - - - - 5 - ACAGTG - 3 - - - - - - 6 - GCCAAT - 3 - - - - - - 7 - CAGATC - 3 - - - - - - 8 - ACTTGA - 3 - - - - - - 9 - GATCAG - 3 - - - - - - 10 - TAGCTT - 3 - - - - - - 11 - GGCTAC - 3 - - - - - - - - - - 1 - ATCACG - 3 - - - - - - 2 - CGATGT - 3 - - - - - - 3 - TTAGGC - 3 - - - - - - 4 - TGACCA - 3 - - - - - - 5 - ACAGTG - 3 - - - - - - 6 - GCCAAT - 3 - - - - - - 7 - CAGATC - 3 - - - - - - 8 - ACTTGA - 3 - - - - - - 9 - GATCAG - 3 - - - - - - 10 - TAGCTT - 3 - - - - - - 11 - GGCTAC - 3 - - - - - - - - - - - - - - - - 1 - ATCACG - 3 - - - - - - 2 - CGATGT - 3 - - - - - - 3 - TTAGGC - 3 - - - - - - 5 - ACAGTG - 3 - - - - - - 6 - GCCAAT - 3 - - - - - - 7 - CAGATC - 3 - - - - - - 8 - ACTTGA - 3 - - - - - - 9 - GATCAG - 3 - - - - - - 10 - TAGCTT - 3 - - - - - - - - - - 1 - - 1 - - - - - - 2 - - 1 - - - - - - 3 - - 1 - - - - - - 4 - - 1 - - - - - - 5 - - 1 - - - - - - 6 - - 1 - - - - - - - - - - 1 - ATCACG - 3 - - - - - - 2 - CGATGT - 3 - - - - - - 3 - TTAGGC - 3 - - - - - - 4 - TGACCA - 3 - - - - - - 5 - ACAGTG - 3 - - - - - - 6 - GCCAAT - 3 - - - - - - 7 - CAGATC - 3 - - - - - - 8 - ACTTGA - 3 - - - - - - 9 - GATCAG - 3 - - - - - - 10 - TAGCTT - 3 - - - - - - 11 - GGCTAC - 3 - - - - - - 12 - CTTGTA - 3 - - - - - - - - - - 1 - ATCACG - 3 - - - - - - 2 - CGATGT - 3 - - - - - - 3 - TTAGGC - 3 - - - - - - 4 - TGACCA - 3 - - - - - - 5 - ACAGTG - 3 - - - - - - 6 - GCCAAT - 3 - - - - - - 7 - CAGATC - 3 - - - - - - 8 - ACTTGA - 3 - - - - - - 9 - GATCAG - 3 - - - - - - 10 - TAGCTT - 3 - - - - - - 11 - GGCTAC - 3 - - - - - - 12 - CTTGTA - 3 - - - - - - - diff --git a/t/data/test45/st/batches/5647.xml b/t/data/test45/st/batches/5647.xml deleted file mode 100644 index 0b91a464..00000000 --- a/t/data/test45/st/batches/5647.xml +++ /dev/null @@ -1,1020 +0,0 @@ - - - 5647 - released - - - - - - 43 - TCATTGAG - 6 - - - - - - 44 - TGGCTCAG - 6 - - - - - - 45 - TATGCCAG - 6 - - - - - - 46 - TCAGATTC - 6 - - - - - - 47 - TACTAGTC - 6 - - - - - - 48 - TTCAGCTC - 6 - - - - - - - - - - 1 - ATCACGTT - 6 - - - - - - 2 - CGATGTTT - 6 - - - - - - 3 - TTAGGCAT - 6 - - - - - - 4 - TGACCACT - 6 - - - - - - 5 - ACAGTGGT - 6 - - - - - - 6 - GCCAATGT - 6 - - - - - - 7 - CAGATCTG - 6 - - - - - - 8 - ACTTGATG - 6 - - - - - - 9 - GATCAGCG - 6 - - - - - - 10 - TAGCTTGT - 6 - - - - - - 11 - GGCTACAG - 6 - - - - - - 12 - CTTGTACT - 6 - - - - - - 13 - TGGTTGTT - 6 - - - - - - 14 - TCTCGGTT - 6 - - - - - - 15 - TAAGCGTT - 6 - - - - - - - - - - 1 - ATCACGTT - 6 - - - - - - 2 - CGATGTTT - 6 - - - - - - 3 - TTAGGCAT - 6 - - - - - - 4 - TGACCACT - 6 - - - - - - 5 - ACAGTGGT - 6 - - - - - - 6 - GCCAATGT - 6 - - - - - - 7 - CAGATCTG - 6 - - - - - - 8 - ACTTGATG - 6 - - - - - - 9 - GATCAGCG - 6 - - - - - - 10 - TAGCTTGT - 6 - - - - - - 11 - GGCTACAG - 6 - - - - - - 12 - CTTGTACT - 6 - - - - - - 13 - TGGTTGTT - 6 - - - - - - 14 - TCTCGGTT - 6 - - - - - - 15 - TAAGCGTT - 6 - - - - - - 16 - TCCGTCTT - 6 - - - - - - 17 - TGTACCTT - 6 - - - - - - 18 - TTCTGTGT - 6 - - - - - - 19 - TCTGCTGT - 6 - - - - - - 20 - TTGGAGGT - 6 - - - - - - 21 - TCGAGCGT - 6 - - - - - - 22 - TGATACGT - 6 - - - - - - 23 - TGCATAGT - 6 - - - - - - 24 - TTGACTCT - 6 - - - - - - 25 - TGCGATCT - 6 - - - - - - 27 - TAGTGACT - 6 - - - - - - 28 - TACAGGAT - 6 - - - - - - 29 - TCCTCAAT - 6 - - - - - - 30 - TGTGGTTG - 6 - - - - - - 31 - TAGTCTTG - 6 - - - - - - 33 - TCGAAGTG - 6 - - - - - - 34 - TAACGCTG - 6 - - - - - - 35 - TTGGTATG - 6 - - - - - - 36 - TGAACTGG - 6 - - - - - - 37 - TACTTCGG - 6 - - - - - - 38 - TCTCACGG - 6 - - - - - - 39 - TCAGGAGG - 6 - - - - - - 40 - TAAGTTCG - 6 - - - - - - 41 - TCCAGTCG - 6 - - - - - - 42 - TGTATGCG - 6 - - - - - - - - - - - - - - - - 43 - TCATTGAG - 6 - - - - - - 44 - TGGCTCAG - 6 - - - - - - 45 - TATGCCAG - 6 - - - - - - 46 - TCAGATTC - 6 - - - - - - 47 - TACTAGTC - 6 - - - - - - 48 - TTCAGCTC - 6 - - - - - - - - - - 1 - ATCACGTT - 6 - - - - - - 2 - CGATGTTT - 6 - - - - - - 3 - TTAGGCAT - 6 - - - - - - 4 - TGACCACT - 6 - - - - - - 5 - ACAGTGGT - 6 - - - - - - 6 - GCCAATGT - 6 - - - - - - 7 - CAGATCTG - 6 - - - - - - 8 - ACTTGATG - 6 - - - - - - 9 - GATCAGCG - 6 - - - - - - 10 - TAGCTTGT - 6 - - - - - - 11 - GGCTACAG - 6 - - - - - - 12 - CTTGTACT - 6 - - - - - - 13 - TGGTTGTT - 6 - - - - - - 14 - TCTCGGTT - 6 - - - - - - 15 - TAAGCGTT - 6 - - - - - - - - - - 1 - ATCACGTT - 6 - - - - - - 2 - CGATGTTT - 6 - - - - - - 3 - TTAGGCAT - 6 - - - - - - 4 - TGACCACT - 6 - - - - - - 5 - ACAGTGGT - 6 - - - - - - 6 - GCCAATGT - 6 - - - - - - 7 - CAGATCTG - 6 - - - - - - 8 - ACTTGATG - 6 - - - - - - 9 - GATCAGCG - 6 - - - - - - 10 - TAGCTTGT - 6 - - - - - - 11 - GGCTACAG - 6 - - - - - - 12 - CTTGTACT - 6 - - - - - - 13 - TGGTTGTT - 6 - - - - - - 14 - TCTCGGTT - 6 - - - - - - 15 - TAAGCGTT - 6 - - - - - - 16 - TCCGTCTT - 6 - - - - - - 17 - TGTACCTT - 6 - - - - - - 18 - TTCTGTGT - 6 - - - - - - 19 - TCTGCTGT - 6 - - - - - - 20 - TTGGAGGT - 6 - - - - - - 21 - TCGAGCGT - 6 - - - - - - 22 - TGATACGT - 6 - - - - - - 23 - TGCATAGT - 6 - - - - - - 24 - TTGACTCT - 6 - - - - - - 25 - TGCGATCT - 6 - - - - - - 27 - TAGTGACT - 6 - - - - - - 28 - TACAGGAT - 6 - - - - - - 29 - TCCTCAAT - 6 - - - - - - 30 - TGTGGTTG - 6 - - - - - - 31 - TAGTCTTG - 6 - - - - - - 33 - TCGAAGTG - 6 - - - - - - 34 - TAACGCTG - 6 - - - - - - 35 - TTGGTATG - 6 - - - - - - 36 - TGAACTGG - 6 - - - - - - 37 - TACTTCGG - 6 - - - - - - 38 - TCTCACGG - 6 - - - - - - 39 - TCAGGAGG - 6 - - - - - - 40 - TAAGTTCG - 6 - - - - - - 41 - TCCAGTCG - 6 - - - - - - 42 - TGTATGCG - 6 - - - - - - - - - - - - - - diff --git a/t/data/test45/st/batches/9589.xml b/t/data/test45/st/batches/9589.xml deleted file mode 100644 index d7f70c3c..00000000 --- a/t/data/test45/st/batches/9589.xml +++ /dev/null @@ -1,151 +0,0 @@ - - - 9589 - released - - - - - - 1 - ATCACGTT - 15 - - - - - 2 - CGATGTTT - 15 - - - - - - - - - 1 - ATCACGTT - 15 - - - - - 2 - CGATGTTT - 15 - - - - - - - - - 1 - ATCACGTT - 15 - - - - - 2 - CGATGTTT - 15 - - - - - - - - - 1 - ATCACGTT - 15 - - - - - 2 - CGATGTTT - 15 - - - - - - - - - 1 - ATCACGTT - 15 - - - - - 2 - CGATGTTT - 15 - - - - - - - - - 1 - ATCACGTT - 15 - - - - - 2 - CGATGTTT - 15 - - - - - - - - - 1 - ATCACGTT - 15 - - - - - 2 - CGATGTTT - 15 - - - - - - - - - 1 - ATCACGTT - 15 - - - - - 2 - CGATGTTT - 15 - - - - - - diff --git a/t/data/test45/st/projects/333.xml b/t/data/test45/st/projects/333.xml deleted file mode 100644 index e728dd14..00000000 --- a/t/data/test45/st/projects/333.xml +++ /dev/null @@ -1,37 +0,0 @@ - - - 333 - CLL whole genome - true - active - - - Project funding model - external - own machine - - - External funding source - - - - Sequencing budget cost centre - - - - Project cost code - S0277 - - - Genotyping committee Tracking ID - - - - Collaborators - - - - Funding comments - - - - diff --git a/t/data/test45/st/projects/645.xml b/t/data/test45/st/projects/645.xml deleted file mode 100644 index 653fcbbc..00000000 --- a/t/data/test45/st/projects/645.xml +++ /dev/null @@ -1,37 +0,0 @@ - - - 645 - UK10K - true - active - - - Project cost code - S0782 - - - Funding comments - - - - Collaborators - - - - External funding source - - - - Sequencing budget cost centre - - - - Project funding model - Internal - - - Genotyping committee Tracking ID - - - - diff --git a/t/data/test45/st/projects/678.xml b/t/data/test45/st/projects/678.xml deleted file mode 100644 index c754ab73..00000000 --- a/t/data/test45/st/projects/678.xml +++ /dev/null @@ -1,37 +0,0 @@ - - - 678 - MQ R and D - true - active - - - Project cost code - S0696 - - - Funding comments - R and D - - - Collaborators - - - - External funding source - - - - Sequencing budget cost centre - - - - Project funding model - Internal - - - Genotyping committee Tracking ID - - - - diff --git a/t/data/test45/st/samples/1015856.xml b/t/data/test45/st/samples/1015856.xml deleted file mode 100644 index f4e97326..00000000 --- a/t/data/test45/st/samples/1015856.xml +++ /dev/null @@ -1,221 +0,0 @@ - - - 1015856 - UK10K_ASDFI5007720 - 1681 - - - Time Point - - - - Organism Part - - - - Genotype - - - - Sample type - - - - Sample extraction method - - - - Father - - - - Plate - - - - Common Name - Homo sapiens - - - Gender - Female - - - Developmental Stage - - - - Concentration determind by - PicoGreen - - - Purification method - - - - Mother - - - - Growth Condition - - - - Dose - - - - Sibling - - - - Public Name - - - - Phenotype - - - - Is re-submitted? - false - - - ENA Sample Accession Number - EGAN00001014725 - - - Replicate - - - - Sample Description - - - - Geographical region - - - - Immunoprecipitate - - - - Cell Type - - - - DNA source - Blood - - - Volume (µl) - 123 - - - Ethnicity - Finnish - - - Organism - - - - Compound - - - - Age - - - - Date of sample collection - - - - TAXON ID - 9606 - - - RNAi - - - - Sample Visibility - - - - Strain - - - - Cohort - ASD_FI - - - Subject - - - - Treatment - - - - Concentration - 180 - - - Date of sample extraction - - - - Country of origin - Finland - - - Disease - - - - Disease State - - - - Sample storage conditions - 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Blood - - - Volume (µl) - 115 - - - Ethnicity - Finnish - - - Organism - - - - Compound - - - - Age - - - - Date of sample collection - - - - TAXON ID - 9606 - - - RNAi - - - - Sample Visibility - - - - Strain - - - - Cohort - ASD_FI - - - Subject - - - - Treatment - - - - Concentration - 94 - - - Date of sample extraction - - - - Country of origin - Finland - - - Disease - - - - Disease State - - - - Sample storage conditions - -20C - - - Sample purified - N - - - GC content - - - - Reference Genome - - - - - - - - - - - - - - - - - - - - - - - - - 1681 - diff --git a/t/data/test45/st/samples/1092799.xml b/t/data/test45/st/samples/1092799.xml deleted file mode 100644 index 0415162e..00000000 --- a/t/data/test45/st/samples/1092799.xml +++ /dev/null @@ -1,235 +0,0 @@ - - - 1092799 - UK10K_UKSCZ5072920 - 1679 - false - - - Organism - - - - Cohort - schiz - - - Country of origin - UK - - - Geographical region - - - - Ethnicity - Caucasian - - - Volume (µl) - 55 - - - Plate - - - - Mother - 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- - - - - - - - - - - - - - - - - - - - - - 1679 - diff --git a/t/data/test45/st/samples/1092801.xml b/t/data/test45/st/samples/1092801.xml deleted file mode 100644 index 814a9f9d..00000000 --- a/t/data/test45/st/samples/1092801.xml +++ /dev/null @@ -1,235 +0,0 @@ - - - 1092801 - UK10K_UKSCZ5072921 - 1679 - false - - - Organism - - - - Cohort - schiz - - - Country of origin - UK - - - Geographical region - - - - Ethnicity - Caucasian - - - Volume (µl) - 55 - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - - - - Gender - Female - - - Donor Id - - - - DNA source - Blood - - - Public Name - - - - Common Name - Homo sapiens - - - Strain - - - - TAXON ID - 9606 - - - ENA Sample Accession Number - EGAN00001017479 - - - Sample Description - - - - Sample Visibility - - - - Sibling - - - - Is re-submitted? - false - - - Date of sample collection - 2011 - - - Date of sample extraction - 2011 - - - Sample extraction method - 8 - - - Sample purified - N - - - Purification method - - - - Concentration - 200 - - - Concentration determind by - PicoGreen - - - Sample type - - - - Sample storage conditions - -20C - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1679 - diff --git a/t/data/test45/st/samples/1092803.xml b/t/data/test45/st/samples/1092803.xml deleted file mode 100644 index 8d93e97e..00000000 --- a/t/data/test45/st/samples/1092803.xml +++ /dev/null @@ -1,235 +0,0 @@ - - - 1092803 - UK10K_UKSCZ5072922 - 1679 - false - - - Organism - - - - Cohort - schiz - - - Country of origin - UK - - - Geographical region - - - - Ethnicity - Caucasian - - - Volume (µl) - 55 - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - 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- - 1679 - diff --git a/t/data/test45/st/samples/1092805.xml b/t/data/test45/st/samples/1092805.xml deleted file mode 100644 index 502b5cc4..00000000 --- a/t/data/test45/st/samples/1092805.xml +++ /dev/null @@ -1,235 +0,0 @@ - - - 1092805 - UK10K_UKSCZ5072923 - 1679 - false - - - Organism - - - - Cohort - schiz - - - Country of origin - UK - - - Geographical region - - - - Ethnicity - Caucasian - - - Volume (µl) - 55 - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - - - - Gender - Male - - - Donor Id - - - - DNA source - Blood - - - Public Name - - - - Common Name - Homo sapiens - - - Strain - - - - TAXON ID - 9606 - - - ENA Sample Accession Number - EGAN00001017481 - - - Sample Description - - - - Sample Visibility - - - - Sibling - - - - Is re-submitted? - false - - - Date of sample collection - 2011 - - - Date of sample extraction - 2011 - - - Sample extraction method - 8 - - - Sample purified - N - - - Purification method - - - - Concentration - 200 - - - Concentration determind by - PicoGreen - - - Sample type - - - - Sample storage conditions - -20C - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1679 - diff --git a/t/data/test45/st/samples/1092807.xml b/t/data/test45/st/samples/1092807.xml deleted file mode 100644 index 469da3d9..00000000 --- a/t/data/test45/st/samples/1092807.xml +++ /dev/null @@ -1,235 +0,0 @@ - - - 1092807 - UK10K_UKSCZ5072924 - 1679 - false - - - Organism - - - - Cohort - schiz - - - Country of origin - UK - - - Geographical region - - - - Ethnicity - Caucasian - - - Volume (µl) - 55 - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - - - - Gender - Male - - - Donor Id - - - - DNA source - Blood - - - Public Name - - - - Common Name - Homo sapiens - - - Strain - - - - TAXON ID - 9606 - - - ENA Sample Accession Number - EGAN00001017482 - - - Sample Description - - - - Sample Visibility - - - - Sibling - - - - Is re-submitted? - false - - - Date of sample collection - 2011 - - - Date of sample extraction - 2011 - - - Sample extraction method - 8 - - - Sample purified - N - - - Purification method - - - - Concentration - 200 - - - Concentration determind by - PicoGreen - - - Sample type - - - - Sample storage conditions - -20C - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1679 - diff --git a/t/data/test45/st/samples/1092809.xml b/t/data/test45/st/samples/1092809.xml deleted file mode 100644 index ad36584e..00000000 --- a/t/data/test45/st/samples/1092809.xml +++ /dev/null @@ -1,235 +0,0 @@ - - - 1092809 - UK10K_UKSCZ5072925 - 1679 - false - - - Organism - - - - Cohort - schiz - - - Country of origin - UK - - - Geographical region - - - - Ethnicity - Caucasian - - - Volume (µl) - 55 - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - - - - Gender - Male - - - Donor Id - - - - DNA source - Blood - - - Public Name - - - - Common Name - Homo sapiens - - - Strain - - - - TAXON ID - 9606 - - - ENA Sample Accession Number - EGAN00001017483 - - - Sample Description - - - - Sample Visibility - - - - Sibling - - - - Is re-submitted? - false - - - Date of sample collection - 2011 - - - Date of sample extraction - 2011 - - - Sample extraction method - 8 - - - Sample purified - N - - - Purification method - - - - Concentration - 200 - - - Concentration determind by - PicoGreen - - - Sample type - - - - Sample storage conditions - -20C - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1679 - diff --git a/t/data/test45/st/samples/1092811.xml b/t/data/test45/st/samples/1092811.xml deleted file mode 100644 index b595889c..00000000 --- a/t/data/test45/st/samples/1092811.xml +++ /dev/null @@ -1,235 +0,0 @@ - - - 1092811 - UK10K_UKSCZ5072926 - 1679 - false - - - Organism - - - - Cohort - schiz - - - Country of origin - UK - - - Geographical region - - - - Ethnicity - Caucasian - - - Volume (µl) - 55 - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - - - - Gender - Male - - - Donor Id - - - - DNA source - Blood - - - Public Name - - - - Common Name - Homo sapiens - - - Strain - - - - TAXON ID - 9606 - - - ENA Sample Accession Number - EGAN00001017484 - - - Sample Description - - - - Sample Visibility - - - - Sibling - - - - Is re-submitted? - false - - - Date of sample collection - 2011 - - - Date of sample extraction - 2011 - - - Sample extraction method - 8 - - - Sample purified - N - - - Purification method - - - - Concentration - 200 - - - Concentration determind by - PicoGreen - - - Sample type - - - - Sample storage conditions - -20C - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1679 - diff --git a/t/data/test45/st/samples/1092813.xml b/t/data/test45/st/samples/1092813.xml deleted file mode 100644 index 76d24296..00000000 --- a/t/data/test45/st/samples/1092813.xml +++ /dev/null @@ -1,235 +0,0 @@ - - - 1092813 - UK10K_UKSCZ5072927 - 1679 - false - - - Organism - - - - Cohort - schiz - - - Country of origin - UK - - - Geographical region - - - - Ethnicity - Caucasian - - - Volume (µl) - 55 - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - - - - Gender - Female - - - Donor Id - - - - DNA source - Blood - - - Public Name - - - - Common Name - Homo sapiens - - - Strain - - - - TAXON ID - 9606 - - - ENA Sample Accession Number - EGAN00001017485 - - - Sample Description - - - - Sample Visibility - - - - Sibling - - - - Is re-submitted? - false - - - Date of sample collection - 2011 - - - Date of sample extraction - 2011 - - - Sample extraction method - 8 - - - Sample purified - N - - - Purification method - - - - Concentration - 200 - - - Concentration determind by - PicoGreen - - - Sample type - - - - Sample storage conditions - -20C - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - 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false - - - Date of sample collection - 2011 - - - Date of sample extraction - 2011 - - - Sample extraction method - 8 - - - Sample purified - N - - - Purification method - - - - Concentration - 200 - - - Concentration determind by - PicoGreen - - - Sample type - - - - Sample storage conditions - -20C - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1679 - diff --git a/t/data/test45/st/samples/1092817.xml b/t/data/test45/st/samples/1092817.xml deleted file mode 100644 index 55ed4dea..00000000 --- a/t/data/test45/st/samples/1092817.xml +++ /dev/null @@ -1,235 +0,0 @@ - - - 1092817 - UK10K_UKSCZ5072929 - 1679 - false - - - Organism - - - - Cohort - schiz - - - Country of origin - UK - - - Geographical region - - - - Ethnicity - Caucasian - - - Volume (µl) - 55 - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - - - - Gender - Female - - - Donor Id - - - - DNA source - Blood - - - Public Name - - - - Common Name - Homo sapiens - - - Strain - - - - TAXON ID - 9606 - - - ENA Sample Accession Number - EGAN00001017487 - - - Sample Description - - - - Sample Visibility - - - - Sibling - - - - Is re-submitted? - false - - - Date of sample collection - 2011 - - - Date of sample extraction - 2011 - - - Sample extraction method - 8 - - - Sample purified - N - - - Purification method - - - - Concentration - 200 - - - Concentration determind by - PicoGreen - - - Sample type - - - - Sample storage conditions - -20C - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - 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- - - Concentration - 200 - - - Concentration determind by - PicoGreen - - - Sample type - - - - Sample storage conditions - -20C - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1679 - diff --git a/t/data/test45/st/samples/1318758.xml b/t/data/test45/st/samples/1318758.xml deleted file mode 100644 index 87880f6e..00000000 --- a/t/data/test45/st/samples/1318758.xml +++ /dev/null @@ -1,233 +0,0 @@ - - - 1318758 - UK10K_UKSCZ5260664 - 1679 - false - - - Organism - - - - Cohort - schiz - - - Country of origin - UK - - - Geographical region - - - - Ethnicity - Caucasian - - - Volume (µl) - 35 - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - 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diff --git a/t/data/test45/st/samples/1318759.xml b/t/data/test45/st/samples/1318759.xml deleted file mode 100644 index ddee39ef..00000000 --- a/t/data/test45/st/samples/1318759.xml +++ /dev/null @@ -1,233 +0,0 @@ - - - 1318759 - UK10K_UKSCZ5260665 - 1679 - false - - - Organism - - - - Cohort - schiz - - - Country of origin - UK - - - Geographical region - - - - Ethnicity - Caucasian - - - Volume (µl) - 35 - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - - - - Gender - Male - - - Donor Id - - - - DNA source - Blood - - - Public Name - - - - Common Name - Homo sapiens - - - Strain - - - - TAXON ID - 9606 - - - ENA Sample Accession Number - EGAN00001083750 - - - Sample Description - - - - Sample Visibility - Public - - - Sibling - - - - Is re-submitted? - false - - - Date of sample collection - 2010 - - - Date of sample extraction - 2010 - - - Sample extraction method - 31 - - - Sample purified - N - - - Purification method - - - - Concentration - 200 - - - Concentration determind by - PicoGreen - - - Sample type - - - - Sample storage conditions - -20C - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1679 - diff --git a/t/data/test45/st/samples/1318760.xml b/t/data/test45/st/samples/1318760.xml deleted file mode 100644 index 665cc759..00000000 --- a/t/data/test45/st/samples/1318760.xml +++ /dev/null @@ -1,235 +0,0 @@ - - - 1318760 - UK10K_UKSCZ5260666 - 1679 - false - - - Organism - - - - Cohort - schiz - - - Country of origin - UK - - - Geographical region - - - - Ethnicity - Caucasian - - - Volume (µl) - 35 - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - - - - Gender - Female - 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- - - Sibling - - - - Is re-submitted? - false - - - Date of sample collection - 2010 - - - Date of sample extraction - 2010 - - - Sample extraction method - 35 - - - Sample purified - N - - - Purification method - - - - Concentration - 200 - - - Concentration determind by - PicoGreen - - - Sample type - - - - Sample storage conditions - -20C - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1679 - diff --git a/t/data/test45/st/samples/1318773.xml b/t/data/test45/st/samples/1318773.xml deleted file mode 100644 index 53a1b104..00000000 --- a/t/data/test45/st/samples/1318773.xml +++ /dev/null @@ -1,233 +0,0 @@ - - - 1318773 - UK10K_UKSCZ5260670 - 1679 - false - 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false - - - Date of sample collection - 2010 - - - Date of sample extraction - 2010 - - - Sample extraction method - 37 - - - Sample purified - N - - - Purification method - - - - Concentration - 200 - - - Concentration determind by - PicoGreen - - - Sample type - - - - Sample storage conditions - -20C - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - 1679 - diff --git a/t/data/test45/st/samples/5053.xml b/t/data/test45/st/samples/5053.xml deleted file mode 100644 index e45141a9..00000000 --- a/t/data/test45/st/samples/5053.xml +++ /dev/null @@ -1,208 +0,0 @@ - - - 5053 - DE1140 - 297 - false - - - Organism - Shigella sonnei - - - Cohort - - - - Country of origin - 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- - 8180 - H3K9me3-5 - 365 - false - - - Organism - Plasmodium falciparum - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - high at - - - Gender - - - - DNA source - - - - Public Name - - - - Common Name - Plasmodium falciparum 3D7 - - - Strain - 3D7 - - - TAXON ID - 36329 - - - ENA Sample Accession Number - ERS005109 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - 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Gender - - - - DNA source - - - - Public Name - - - - Common Name - Plasmodium falciparum 3D7 - - - Strain - 3D7 - - - TAXON ID - 36329 - - - ENA Sample Accession Number - ERS005112 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 365 - diff --git a/t/data/test45/st/samples/8183.xml b/t/data/test45/st/samples/8183.xml deleted file mode 100644 index b9da5997..00000000 --- a/t/data/test45/st/samples/8183.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 8183 - H3-5 - 365 - false - - - Organism - Plasmodium falciparum - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - high at - - - Gender - - - - DNA source - - - - Public Name - - - - Common Name - Plasmodium falciparum 3D7 - - - Strain - 3D7 - - - TAXON ID - 36329 - - - ENA Sample Accession Number - ERS005110 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - 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- - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 365 - diff --git a/t/data/test45/st/samples/8185.xml b/t/data/test45/st/samples/8185.xml deleted file mode 100644 index 76a5a2f8..00000000 --- a/t/data/test45/st/samples/8185.xml +++ /dev/null @@ -1,211 +0,0 @@ - - - 8185 - Control-5 - 365 - false - - - Organism - Plasmodium falciparum - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - high at - - - Gender - - - - DNA source - - - - Public Name - - - - Common Name - Plasmodium falciparum 3D7 - - - Strain - 3D7 - - - TAXON ID - 36329 - - - ENA Sample Accession Number - ERS005113 - - - Sample Description - - - - Sample Visibility - Hold - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - 365 - diff --git a/t/data/test45/st/samples/9836.xml b/t/data/test45/st/samples/9836.xml deleted file mode 100644 index aaedb241..00000000 --- a/t/data/test45/st/samples/9836.xml +++ /dev/null @@ -1,457 +0,0 @@ - - - 9836 - phiX CT1462-2 1 - false - - - Organism - - - - Cohort - - - - Country of origin - - - - Geographical region - - - - Ethnicity - - - - Volume (µl) - - - - Plate - - - - Mother - - - - Father - - - - Replicate - - - - GC content - - - - Gender - - - - Donor Id - - - - DNA source - - - - Public Name - - - - Common Name - - - - Strain - - - - TAXON ID - - - - ENA Sample Accession Number - - - - Sample Description - - - - Sample Visibility - - - - Sibling - - - - Is re-submitted? - - - - Date of sample collection - - - - Date of sample extraction - - - - Sample extraction method - - - - Sample purified - - - - Purification method - - - - Concentration - - - - Concentration determind by - - - - Sample type - - - - Sample storage conditions - - - - Genotype - - - - Phenotype - - - - Age - - - - Developmental Stage - - - - Cell Type - - - - Disease State - - - - Compound - - - - Dose - - - - Immunoprecipitate - - - - Growth Condition - - - - RNAi - - - - Organism Part - - - - Time Point - - - - Treatment - - - - Subject - - - - Disease - - - - Reference Genome - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - diff --git a/t/data/test45/st/studies/1679.xml b/t/data/test45/st/studies/1679.xml deleted file mode 100644 index acea9734..00000000 --- a/t/data/test45/st/studies/1679.xml +++ /dev/null @@ -1,213 +0,0 @@ - - - 1679 - UK10K_NEURO_UKSCZ - true - 82 - - - elg - elg@sanger.ac.uk - Emma Gray - 236 - - - cj5 - cj5@sanger.ac.uk - Chris Joyce - 305 - - - - - jws - jws@sanger.ac.uk - James Stalker - 82 - - - sm15 - sm15@sanger.ac.uk - Shane McCarthy - 618 - - - - - jws - jws@sanger.ac.uk - James Stalker - 82 - - - sm15 - sm15@sanger.ac.uk - Shane McCarthy - 618 - - - - - 2010-11-18 11:24:33 +0000 - 2013-04-05 12:19:51 +0100 - - - Study description - In the UK10K project we propose a series of complementary genetic approaches to find new low frequency/rare variants contributing to disease phenotypes. These will be based on obtaining the genome wide sequence of 4000 samples from the TwinsUK and ALSPAC cohorts (at 6x sequence coverage), and the exome sequence (protein coding regions and related conserved sequence) of 6000 samples selected for extreme phenotypes. Our studies will focus primarily on cardiovascular-related quantitative traits, obesity and related metabolic traits, neurodevelopmental disorders and a limited number of extreme clinical phenotypes that will provide proof-of-concept for future familial trait sequencing. We will analyse directly quantitative traits in the cohorts and the selected traits in the extreme samples, and also use imputation down to 0.1% allele frequency to extend the analyses to further sample sets with genome wide genotype data. In each case we will investigate indels and larger structural variants as well as SNPs, and use statistical methods that combine rare variants in a locus or pathway as well as single-variant approaches. - -The UK schizophrenia samples will be part of the neurodevelopmental disease group, and will undergo exome sequencing. - - - Does this study contain samples that are contaminated with human DNA which must be removed prior to analysis? - No - - - Does this study require the removal of X chromosome and autosome sequence? - No - - - Does this study require y chromosome data to be separated from x and autosomal data before archival? - false - - - ENA Project ID - 0 - - - Abstract - The samples from patients with schizophrenia have been collected -systematically across community mental health teams and clinics in South -Wales. All samples are from UK Caucasian participants. The -UK10K_NEURO_UKSCZ sample set also includes samples from participant's -relatives (without schizophrenia/psychosis). - - - Title - UK10K exome sequence: UK schizophrenia samples - - - ENA Study Accession Number - EGAS00001000123 - - - Study Visibility - Hold - - - Do any of the samples in this study contain human DNA? - Yes - - - Are all the samples to be used in this study commercially available, unlinked anonymised cell-lines? - No - - - Study name abbreviation - UK10K_UKSCZ - - - What is the data release strategy for this study? - managed - - - Will you be using WTSI's standard access agreement? - No - - - How is the data release to be timed? - standard - - - Reason for delaying release - - - - Delay for - - - - Alignments in BAM - true - - - Please explain the reason for delaying release - - - - Comment regarding data release timing and approval - - - - Policy Url - - - - Policy title - - - - EGA DAC Accession Number - EGAC00001000024 - - - EGA Policy Accession Number - EGAP00001000021 - - - ArrayExpress Accession Number - - - - Has the delay period been approved by the data sharing committee for this project? - - - - What is the reason for preventing data release? - - - - Has this been approved? - - - - Comment regarding prevention of data release and approval - - - - Data access group - - - - SNP study ID - - - - SNP parent study ID - - - - Number of gigabases per sample (minimum 0.15) - - - - HMDMC approval number - - - - Study Type - Exome Sequencing - - - What sort of study is this? - genomic sequencing - - - Reference Genome - Homo_sapiens (1000Genomes) - - - Faculty Sponsor - Richard Durbin - - - diff --git a/t/data/test45/st/studies/198.xml b/t/data/test45/st/studies/198.xml deleted file mode 100644 index e2ad4aad..00000000 --- a/t/data/test45/st/studies/198.xml +++ /dev/null @@ -1,181 +0,0 @@ - - - 198 - Illumina Controls - true - 83 - - - hps - hps@sanger.ac.uk - Harold Swerdlow - 83 - - - - - hps - hps@sanger.ac.uk - Harold Swerdlow - 83 - - - - - 2008-11-13 13:27:48 +0000 - 2013-08-12 14:14:01 +0100 - - - Study description - None - - - Does this study contain samples that are contaminated with human DNA which must be removed prior to analysis? - No - - - Does this study require the removal of X chromosome and autosome sequence? - No - - - Does this study require y chromosome data to be separated from x and autosomal data before archival? - false - - - ENA Project ID - - - - Abstract - - - - Title - - - - ENA Study Accession Number - - - - Study Visibility - Hold - - - Do any of the samples in this study contain human DNA? - No - - - Are all the samples to be used in this study commercially available, unlinked anonymised cell-lines? - No - - - Study name abbreviation - - - - What is the data release strategy for this study? - open - - - Will you be using WTSI's standard access agreement? - - - - How is the data release to be timed? - standard - - - Reason for delaying release - - - - Delay for - - - - Alignments in BAM - true - - - Please explain the reason for delaying release - - - - Comment regarding data release timing and approval - - - - Policy Url - - - - Policy title - - - - EGA DAC Accession Number - - - - EGA Policy Accession Number - - - - ArrayExpress Accession Number - - - - Has the delay period been approved by the data sharing committee for this project? - - - - What is the reason for preventing data release? - - - - Has this been approved? - - - - Comment regarding prevention of data release and approval - - - - Data access group - - - - SNP study ID - - - - SNP parent study ID - - - - Number of gigabases per sample (minimum 0.15) - - - - HMDMC approval number - - - - Study Type - Resequencing - - - What sort of study is this? - genotyping or cytogenetics - - - Reference Genome - - - - Faculty Sponsor - None - - - diff --git a/t/data/test45/st/studies/297.xml b/t/data/test45/st/studies/297.xml deleted file mode 100644 index 34ccaa7b..00000000 --- a/t/data/test45/st/studies/297.xml +++ /dev/null @@ -1,193 +0,0 @@ - - - 297 - Discovery of sequence diversity in Shigella sp. - true - 206 - - - tfelt - tfelt@sanger.ac.uk - Theresa Feltwell - 112 - - - deh - deh@sanger.ac.uk - David Harris - 138 - - - tc7 - tc7@sanger.ac.uk - Thomas Connor - 475 - - - - - deh - deh@sanger.ac.uk - David Harris - 138 - - - jm15 - jm15@sanger.ac.uk - Jacqueline McQuillan - 67 - - - nds - nds@sanger.ac.uk - Nishadi De Silva - 383 - - - - - tfelt - tfelt@sanger.ac.uk - Theresa Feltwell - 112 - - - - - 2009-04-27 11:46:48 +0100 - 2010-09-09 14:27:54 +0100 - - - Has this been approved? - - - - Delay for - - - - Study description - For further information on this study please see http://www.sanger.ac.uk/resources/downloads/bacteria/shigella-sonnei.html This data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria), please see http://www.sanger.ac.uk/datasharing/ - - - ENA Study Accession Number - ERP000182 - - - Title - Discovery of sequence diversity in Shigella sp. - - - SNP study ID - - - - Abstract - For further information on this study please see http://www.sanger.ac.uk/resources/downloads/bacteria/shigella-sonnei.html - - - Study name abbreviation - - - - Do any of the samples in this study contain human DNA? - No - - - Study Visibility - Hold - - - Has the delay period been approved by the data sharing committee for this project? - - - - ArrayExpress Accession Number - - - - How is the data release to be timed? - standard - - - SNP parent study ID - - - - EGA DAC Accession Number - - - - Please explain the reason for delaying release (e.g., pre-existing collaborative agreement) - - - - What is the data release strategy for this study? - open - - - EGA Policy Accession Number - - - - Does this study contain samples that are contaminated with human DNA which must be removed prior to analysis? - No - - - Reason for delaying release - - - - Policy - - - - ENA Project ID - - - - Comment regarding prevention of data release and approval - - - - Are all the samples to be used in this study commercially available, unlinked anonymised cell-lines? - No - - - Number of gigabases per sample (minimum 0.15) - - - - What is the reason for preventing data release? - - - - Comment regarding data release timing and approval - - - - Alignments in BAM - true - - - Will you be using WTSI's standard access agreement? - - - - Faculty Sponsor - Julian Parkhill - - - What sort of study is this? - genomic sequencing - - - Reference Genome - - - - Study Type - Whole Genome Sequencing - - - diff --git a/t/data/test45/st/studies/333.xml b/t/data/test45/st/studies/333.xml deleted file mode 100644 index 4954d12a..00000000 --- a/t/data/test45/st/studies/333.xml +++ /dev/null @@ -1,179 +0,0 @@ - - - 333 - CLL whole genome - true - 145 - - - las - las@sanger.ac.uk - Lucy Stebbings - 21 - - - pc8 - pc8@sanger.ac.uk - Peter Campbell - 51 - - - dg10 - dg10@sanger.ac.uk - Danushka Galappaththige - 300 - - - - - sm2 - sm2@sanger.ac.uk - Stuart McLaren - 145 - - - - - sm2 - sm2@sanger.ac.uk - Stuart McLaren - 145 - - - - - 2009-06-24 17:43:05 +0100 - 2010-03-23 16:34:10 +0000 - - - SNP study ID - - - - What is the reason for preventing data release? - - - - ArrayExpress Accession Number - - - - Please explain the reason for delaying release (e.g., pre-existing collaborative agreement) - - - - Alignments in BAM - true - - - Reason for delaying release - - - - Comment regarding prevention of data release and approval - - - - How is the data release to be timed? - standard - - - Policy - - - - Study description - Genomic libraries (500 bps) will be generated from total genomic DNA derived from a range of cancer samples and subjected paired end sequencing on the llumina GA. Paired reads will be mapped to build 37 of the human reference genome to facilitate the generation of genome wide copy number information, and the identification of novel rearranged cancer genes and gene fusions. - - - - EGA Policy Accession Number - - - - Will you be using WTSI's standard access agreement? - No - - - Study name abbreviation - - - - Does this study contain samples that are contaminated with human DNA which must be removed prior to analysis? - No - - - Study Visibility - Hold - - - Delay for - - - - SNP parent study ID - - - - Comment regarding data release timing and approval - - - - EGA DAC Accession Number - - - - Has this been approved? - - - - Has the delay period been approved by the data sharing committee for this project? - - - - What is the data release strategy for this study? - managed - - - Are all the samples to be used in this study commercially available, unlinked anonymised cell-lines? - No - - - Do any of the samples in this study contain human DNA? - Yes - - - ENA Study Accession Number - EGAS00001000014 - - - Title - CLL Cancer Whole Genome Sequencing - - - Abstract - The aim of this project is to identify the somatic mutations and hence the genes involved in the development of chronic lymphocytic leukemia critical through the sequencing of chronic lymphocytic leukemia cancer genomes and normal DNAs from the same individuals. Tumour DNA will be analysed and compared to matching constitutional (normal) DNA from the same patient to identify tumour-acquired (somatic) alterations. These alterations (mutations, copy number alterations, translocations and other genomic aberrations) will be identified in multiple tumours and then these sets will be compared against each other to determine which genes are mutated in common and which pathways have been targeted - - - - ENA Project ID - 0 - - - Study Type - Cancer Genomics - - - Faculty Sponsor - Peter Campbell - - - What sort of study is this? - genomic sequencing - - - Reference Genome - - - - diff --git a/t/data/test45/st/studies/365.xml b/t/data/test45/st/studies/365.xml deleted file mode 100644 index 6f9d50d2..00000000 --- a/t/data/test45/st/studies/365.xml +++ /dev/null @@ -1,161 +0,0 @@ - - - 365 - Plasmodium falciparum 3D7 ChIP-Seq - false - 29 - - - mjs - mjs@sanger.ac.uk - Mandy Sanders - 29 - - - - - mjs - mjs@sanger.ac.uk - Mandy Sanders - 29 - - - - - 2009-08-20 11:52:43 +0100 - 2010-03-23 16:54:36 +0000 - - - Has this been approved? - - - - Delay for - - - - Study description - Multiplex sequencing of ChIP derived fragments of Plasmodium falciparum 3D7. This data is part of a pre-publication release. For information on the proper use of pre-publication data shared by the Wellcome Trust Sanger Institute (including details of any publication moratoria), please see http://www.sanger.ac.uk/datasharing/ - - - ENA Study Accession Number - - - - Title - - - - SNP study ID - - - - Abstract - - - - Study name abbreviation - - - - Do any of the samples in this study contain human DNA? - Yes - - - Study Visibility - Hold - - - Has the delay period been approved by the data sharing committee for this project? - - - - ArrayExpress Accession Number - - - - How is the data release to be timed? - standard - - - SNP parent study ID - - - - EGA DAC Accession Number - - - - Please explain the reason for delaying release (e.g., pre-existing collaborative agreement) - - - - What is the data release strategy for this study? - open - - - EGA Policy Accession Number - - - - Does this study contain samples that are contaminated with human DNA which must be removed prior to analysis? - Yes - - - Reason for delaying release - - - - Policy - - - - ENA Project ID - - - - Comment regarding prevention of data release and approval - - - - Are all the samples to be used in this study commercially available, unlinked anonymised cell-lines? - No - - - Number of gigabases per sample (minimum 0.15) - - - - What is the reason for preventing data release? - - - - Comment regarding data release timing and approval - - - - Alignments in BAM - true - - - Will you be using WTSI's standard access agreement? - - - - Faculty Sponsor - Matt Berriman - - - What sort of study is this? - genomic sequencing - - - Reference Genome - - - - Study Type - Epigenetics - - - diff --git a/t/data/test45/st/studies/700.xml b/t/data/test45/st/studies/700.xml deleted file mode 100644 index 95244282..00000000 --- a/t/data/test45/st/studies/700.xml +++ /dev/null @@ -1,195 +0,0 @@ - - - 700 - Kapa HiFi test - true - 7 - - - mq1 - mq1@sanger.ac.uk - Michael Quail - 7 - - - ems - ems@sanger.ac.uk - Elizabeth Sheridan - 72 - - - - - mq1 - mq1@sanger.ac.uk - Michael Quail - 7 - - - - - 2010-10-07 16:11:00 +0100 - 2012-11-26 14:15:35 +0000 - - - Study description - − I have agreed to alpha test the kapa hifi qPCR kit. This allows prep PCR to be followed in real time and stopped when sufficient product has accumulated so preventing overcycling and allowing user to interrogate prep PCR step. -− If we are to use this enzyme we need to know that it is at least as good as Phusion in terms of fidelity and coverage. -− In theory kapa hifi has higher fidelity than phusion. - - - - Does this study contain samples that are contaminated with human DNA which must be removed prior to analysis? - No - - - Does this study require the removal of X chromosome and autosome sequence? - No - - - Does this study require y chromosome data to be separated from x and autosomal data before archival? - false - - - ENA Project ID - 0 - - - Abstract - Purpose of experiment - -− To evaluate kapa hifi qPCR kit -− To evaluate kapa hifi and "robust" enzymes as alternatives to phusion. How do libraries prepared with these enzymes compare in terms of fidelity and coverage? -− To generate data on test genomes that can be used in Pacbio data analysis - - - - Title - hifi test - - - ENA Study Accession Number - - - - Study Visibility - Hold - - - Do any of the samples in this study contain human DNA? - No - - - Are all the samples to be used in this study commercially available, unlinked anonymised cell-lines? - No - - - Study name abbreviation - - - - What is the data release strategy for this study? - not applicable - - - Will you be using WTSI's standard access agreement? - - - - How is the data release to be timed? - never - - - Reason for delaying release - - - - Delay for - - - - Alignments in BAM - true - - - Please explain the reason for delaying release - - - - Comment regarding data release timing and approval - - - - Policy Url - - - - Policy title - - - - EGA DAC Accession Number - - - - EGA Policy Accession Number - - - - ArrayExpress Accession Number - - - - Has the delay period been approved by the data sharing committee for this project? - - - - What is the reason for preventing data release? - data validity - - - Has this been approved? - Yes - - - Comment regarding prevention of data release and approval - R+D Project - - - Data access group - - - - SNP study ID - - - - SNP parent study ID - - - - Number of gigabases per sample (minimum 0.15) - - - - HMDMC approval number - - - - Study Type - Whole Genome Sequencing - - - What sort of study is this? - genomic sequencing - - - Reference Genome - - - - Faculty Sponsor - Harold Swerdlow - - - diff --git a/t/useragent.pm b/t/useragent.pm deleted file mode 100644 index 8358f34c..00000000 --- a/t/useragent.pm +++ /dev/null @@ -1,99 +0,0 @@ -package t::useragent; -use strict; -use warnings; -use Test::More; -use English qw(-no_match_vars); -use Carp; - -sub new { - my ($class, $ref) = @_; - $ref ||= {}; - $ref->{'mock'} ||= {}; - - if(!exists $ref->{is_success}) { - carp qq(Did you mean to leave ua->{'is_success'} unset?); - } - $ref->{last_request} = []; - - return bless $ref, $class; -} - -sub mock { - my ($self, $mock) = @_; - if($mock) { - $self->{mock} = $mock; - } - return $self->{mock}; -} - -sub last_request { - my ($self, $last_request) = @_; - if($last_request) { - push @{$self->{last_request}}, $last_request; - } - return $self->{last_request}->[-1] || {}; -} - -sub requests { - my $self = shift; - return $self->{last_request}; -} - -sub get { - my ($self, $uri) = @_; - $self->{'uri'} = $uri; - return $self; -} - -sub post { - my ($self, $uri, %args) = @_; - $self->{uri} = $uri; - push @{$self->{last_request}}, \%args; - return $self; -} - -sub request { - my ($self, $req) = @_; - $self->{uri} = $req->uri(); - push @{$self->{last_request}}, $req; - return $self; -} - -sub requests_redirectable { - my $self = shift; - return []; -} - -sub content { - my $self = shift; - - my $test_data = $self->{mock}->{$self->{uri}}; - if (!$test_data) { - croak qq(No mock data configured for $self->{'uri'}); - } - - if ($test_data && $test_data =~ /^t\/|\/tmp\//sm) { - open my $fh, q(<), $test_data or croak qq(Error opening '$test_data': $ERRNO); - local $RS = undef; - my $content = <$fh>; - close $fh; - return $content; - } - return $test_data; -} - -sub decoded_content { - my $self = shift; - return $self->content(); -} - -sub response { my $self = shift; return $self; } -sub is_success { my $self = shift; return $self->{'is_success'}; } -sub status_line { return 'error in t::useragent'; } -sub headers { - my $self = shift; - return $self; -} -sub header { return q[]; } - -1;