diff --git a/Changes b/Changes index be449358..8f538bfc 100644 --- a/Changes +++ b/Changes @@ -1,5 +1,35 @@ LIST OF CHANGES + - Removed the use of 'xml' lims driver from all tests. + - Deleted 'xml' lims driver class and all classes which supported this + functionality, together with all related tests and test data. + - In release 97.0.0, the default LIMS driver type in samplesheet generation + was changed to 'ml_warehouse'. Following this change, the code for + auto-generation of MiSeq default samplesheets is now simplified to exclude + an explicit creation of LIMS objects. + - Changes to st::api::lims, which are not related to the 'xml' lims driver + removal: + - deleted all previously deprecated methods ('seq_qc_state', + 'associated_lims', 'associated_child_lims', 'associated_child_lims_ia'); + - deleted methods for which we do not have data in ml warehouse, our + primary source of LIMS data ('request_id', 'project_id', 'project_name'); + - deleted all code for computing inline tag indexes and inferring + tag sequences and library types from sample description since + definitions like this have not been in use for the last six years; + - reimplemented the 'reference_genome' method to exclude a fallback to + a study reference for tag zero and lane-level objects when samples + have different references. + - Restricted the 'all_lanes_mergeable' flag in the 'long_info' role to + NovaSeq Standard workflow, ie dropped an additional case of HiSeq Rapid Run + since HiSeq instruments are no longer used. + - Updated DBIx classes from the prod database. Changes are due to the MySQL + database server upgrade to v8.+ + - Finding the runfolder path - stopped errors being raised when a runfolder + is found in 'analysis' or 'outgoing' in the presence of a duplicate runfolder + in 'incoming' (the duplicates in 'incoming' are sometimes created by + instruments well after the run was mirrored and the runfolder moved to + 'analysis'). The duplicate runfolder in 'incoming' is disregarded'. + release 97.0.0 - Change CI workflow to standard file name - Change to Perl versions from Perlbrew