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viewCNVAndImprovementStatus.php
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viewCNVAndImprovementStatus.php
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<script src="https://code.jquery.com/jquery-3.6.0.min.js" integrity="sha256-/xUj+3OJU5yExlq6GSYGSHk7tPXikynS7ogEvDej/m4=" crossorigin="anonymous"></script>
<script src="https://cdn.plot.ly/plotly-2.12.1.min.js"></script>
<?php
$TITLE = "Soybean Genomic Variations Explorer";
// include '../header.php';
include '../config.php';
include './php/pdoResultFilter.php';
?>
<!-- Get and process the variables -->
<?php
$chromosome = $_GET['chromosome_1'];
$position_start = $_GET['position_start_1'];
$position_end = $_GET['position_end_1'];
$data_option = $_GET['cnv_data_option_1'];
$chromosome = trim($chromosome);
$position_start = intval(trim($position_start));
$position_end = intval(trim($position_end));
$data_option = trim($data_option);
?>
<h3>Figure:</h3>
<div>
<div id="cn_and_improvement_status_summary_plot_div">Loading CN and improvement status summary plot...</div>
<div id="cn_and_improvement_status_summary_table_div">Loading CN and improvement status summary table...</div>
<div>
<hr>
<h3>Full Table:</h3>
<div id="cn_and_improvement_status_table_div">Loading CN and improvement status table...</div>
<?php include '../footer.php'; ?>
<script type="text/javascript" language="javascript" src="./js/viewCNVAndImprovementStatus.js"></script>
<script type="text/javascript" language="javascript">
var chromosome = <?php if(isset($chromosome)) {echo json_encode($chromosome, JSON_INVALID_UTF8_IGNORE);} else {echo "";}?>;
var position_start = <?php if(isset($position_start)) {echo json_encode($position_start, JSON_INVALID_UTF8_IGNORE);} else {echo "";}?>;
var position_end = <?php if(isset($position_end)) {echo json_encode($position_end, JSON_INVALID_UTF8_IGNORE);} else {echo "";}?>;
var data_option = <?php if(isset($data_option)) {echo json_encode($data_option, JSON_INVALID_UTF8_IGNORE);} else {echo "";}?>;
if (chromosome && position_start && position_end && data_option) {
$.ajax({
url: './php/queryCNVAndImprovementStatus.php',
type: 'GET',
contentType: 'application/json',
data: {
Chromosome: chromosome,
Start: position_start,
End: position_end,
Data_Option: data_option
},
success: function (response) {
res = JSON.parse(response);
if (res) {
document.getElementById("cn_and_improvement_status_summary_plot_div").style.minHeight = "800px";
// Render data
document.getElementById('cn_and_improvement_status_table_div').innerText = "";
document.getElementById('cn_and_improvement_status_table_div').innerHTML = "";
document.getElementById('cn_and_improvement_status_table_div').appendChild(
constructInfoTable(JSON.parse(JSON.stringify(res['data'])))
);
document.getElementById('cn_and_improvement_status_table_div').style.maxHeight = '1000px';
document.getElementById('cn_and_improvement_status_table_div').style.display = 'inline-block';
document.getElementById('cn_and_improvement_status_table_div').style.overflow = 'scroll';
// Summarize data
var result_dict = summarizeQueriedData(
JSON.parse(JSON.stringify(res['data'])),
'Improvement_Status',
'CN'
);
var result_arr = result_dict['Data'];
var summary_array = result_dict['Summary'];
for (let i = 0; i < summary_array.length; i++) {
if(summary_array[i].hasOwnProperty('Number_of_Accession_with_Phenotype')){
delete summary_array[i]['Number_of_Accession_with_Phenotype']
}
if(summary_array[i].hasOwnProperty('Number_of_Accession_without_Phenotype')){
delete summary_array[i]['Number_of_Accession_without_Phenotype']
}
}
// Make plot
var cnAndImprovementStatusData = collectDataForFigure(result_arr, 'Improvement_Status', 'CN');
plotFigure(cnAndImprovementStatusData, 'CN', 'Improvement_Status_Summary', 'cn_and_improvement_status_summary_plot_div');
// Render data
document.getElementById('cn_and_improvement_status_summary_table_div').innerText = "";
document.getElementById('cn_and_improvement_status_summary_table_div').innerHTML = "";
document.getElementById('cn_and_improvement_status_summary_table_div').appendChild(
constructInfoTable(summary_array)
);
document.getElementById('cn_and_improvement_status_summary_table_div').style.overflow = 'scroll';
}
},
error: function (xhr, status, error) {
console.log('Error with code ' + xhr.status + ': ' + xhr.statusText);
document.getElementById('cn_and_improvement_status_summary_plot_div').innerText="";
document.getElementById('cn_and_improvement_status_summary_plot_div').innerHTML="";
var p_tag = document.createElement('p');
p_tag.innerHTML = "CN and improvement status distribution summary figure is not available due to lack of data!!!";
document.getElementById('cn_and_improvement_status_summary_plot_div').appendChild(p_tag);
document.getElementById('cn_and_improvement_status_summary_table_div').innerText="";
document.getElementById('cn_and_improvement_status_summary_table_div').innerHTML="";
var p_tag = document.createElement('p');
p_tag.innerHTML = "CN and improvement status distribution summary figure is not available due to lack of data!!!";
document.getElementById('cn_and_improvement_status_summary_table_div').appendChild(p_tag);
document.getElementById('cn_and_improvement_status_table_div').innerText="";
document.getElementById('cn_and_improvement_status_table_div').innerHTML="";
var p_tag = document.createElement('p');
p_tag.innerHTML = "CN and improvement status distribution table is not available due to lack of data!!!";
document.getElementById('cn_and_improvement_status_table_div').appendChild(p_tag);
}
});
} else {
document.getElementById('cn_and_improvement_status_summary_plot_div').innerText="";
document.getElementById('cn_and_improvement_status_summary_plot_div').innerHTML="";
var p_tag = document.createElement('p');
p_tag.innerHTML = "CN and improvement status distribution summary figure is not available due to lack of data!!!";
document.getElementById('cn_and_improvement_status_summary_plot_div').appendChild(p_tag);
document.getElementById('cn_and_improvement_status_summary_table_div').innerText="";
document.getElementById('cn_and_improvement_status_summary_table_div').innerHTML="";
var p_tag = document.createElement('p');
p_tag.innerHTML = "CN and improvement status distribution summary figure is not available due to lack of data!!!";
document.getElementById('cn_and_improvement_status_summary_table_div').appendChild(p_tag);
document.getElementById('cn_and_improvement_status_table_div').innerText="";
document.getElementById('cn_and_improvement_status_table_div').innerHTML="";
var p_tag = document.createElement('p');
p_tag.innerHTML = "CN and improvement status distribution table is not available due to lack of data!!!";
document.getElementById('cn_and_improvement_status_table_div').appendChild(p_tag);
}
</script>