chromosomewise_inputs.json

{
	"project_name": "Test",
	"workflow_path": "/scratch/yenc/projects/snakyVC",
	"input_files_1": [
		"/scratch/yenc/projects/snakyVC/data/CCCRR108616_1.fastq",
		"/scratch/yenc/projects/snakyVC/data/CCCRR108617_1.fastq",
		"/scratch/yenc/projects/snakyVC/data/CCCRR108618_1.fastq",
		"/scratch/yenc/projects/snakyVC/data/CCCRR108619_1.fastq"
	],
	"input_files_2": [
		"/scratch/yenc/projects/snakyVC/data/CCCRR108616_2.fastq",
		"/scratch/yenc/projects/snakyVC/data/CCCRR108617_2.fastq",
		"/scratch/yenc/projects/snakyVC/data/CCCRR108618_2.fastq",
		"/scratch/yenc/projects/snakyVC/data/CCCRR108619_2.fastq"
	],
	"chromosomes": [
		"Chr01:1-100000",
		"Chr02:1-100000",
		"Chr03:1-100000",
		"Chr04:1-100000",
		"Chr05:1-100000",
		"Chr06:1-100000",
		"Chr07:1-100000",
		"Chr08:1-100000",
		"Chr09:1-100000",
		"Chr10:1-100000",
		"Chr11:1-100000",
		"Chr12:1-100000",
		"Chr13:1-100000",
		"Chr14:1-100000",
		"Chr15:1-100000",
		"Chr16:1-100000",
		"Chr17:1-100000",
		"Chr18:1-100000",
		"Chr19:1-100000",
		"Chr20:1-100000"
	],
	"reference_file": "/scratch/yenc/projects/snakyVC/data/Wm82.a2.v1.subset.fa",
	"output_folder": "/scratch/yenc/projects/snakyVC/output/",
	"memory": 100,
	"threads": 10
}