Merge pull request OpenMS#7422 from ypriverol/develop

Standarizing enzymes for three major search engines COMET MSGF+ and SAGE

Author: jpfeuffer

share/OpenMS/CHEMISTRY/Enzymes.xml

@@ -35,6 +35,7 @@
       <ITEM name="NTermGain" value="H" type="string" />
       <ITEM name="CTermGain" value="OH" type="string" />
       <ITEM name="XTandemID" value="[R]|[X]" type="string" />
+      <ITEM name="CometID"   value="12" type="int" />
       <ITEM name="MSGFID" value="6" type="int" />
     </NODE>
     <NODE name="Asp-N">

src/topp/CometAdapter.cpp

@@ -577,6 +577,7 @@ class TOPPCometAdapter :
     os << "9.  PepsinA                1      FL          P" << "\n";
     os << "10. Chymotrypsin           1      FWYL        P" << "\n";
     os << "11. No_cut                 1      @           @" << "\n";
+    os << "12. Arg-C/P                1.     R           _" << "\n";
 
     return ExitCodes::EXECUTION_OK;
   }