From 90b4c50db29bf2e4d04a319ea9b537df0cead3a9 Mon Sep 17 00:00:00 2001 From: Haotian Date: Sun, 5 Jan 2025 11:53:39 -0500 Subject: [PATCH] add tutorial --- Scistree2_Tutorial.ipynb | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/Scistree2_Tutorial.ipynb b/Scistree2_Tutorial.ipynb index 61edcef..ca081f3 100644 --- a/Scistree2_Tutorial.ipynb +++ b/Scistree2_Tutorial.ipynb @@ -9,13 +9,14 @@ "This tutorial consists of two parts:\n", "\n", "- **Part I** introduces the usage of Scistree2 with a toy example.\n", - "- **Part II** guides you through the entire analysis of a high-grade serous ovarian carcinoma (HGSOC) dataset, as shown in the paper *\"ScisTree2: An Improved Method for Large-scale Inference of Cell Lineage Trees and Genotype Calling from Noisy Single Cell Data.\"*\n", + "- **Part II** guides you through the entire analysis of a high-grade serous ovarian carcinoma (HGSOC) dataset, as shown in the paper *\"ScisTree2: An Improved Method for Large-scale Inference of Cell Lineage Trees and Genotype Calling from Noisy Single Cell Data.\"*, accepted to be presented in the RECOMB 2025.\n", "\n", "## Resources:\n", "\n", "- Scistree2 binary file: [GitHub - ScisTree2](https://github.com/yufengwudcs/ScisTree2)\n", "- HGSOC dataset: [Zenodo - HGSOC Dataset](https://zenodo.org/records/3445364)\n", "- Other utilities: Get `popgen` from [GitHub - popgen](https://github.com/haotianzh/popgen)\n", + "- Paper: https://www.biorxiv.org/content/10.1101/2024.11.08.622704v1\n", "\n", "## Setup Instructions:\n", "\n",