From c2f2e15a5974e90eaa8c831c0521b42f656083d4 Mon Sep 17 00:00:00 2001 From: Michael Macias Date: Thu, 31 Aug 2023 13:37:01 -0500 Subject: [PATCH] Bump versions for noodles 0.50.0 --- README.md | 2 +- noodles-bam/CHANGELOG.md | 2 +- noodles-bam/Cargo.toml | 10 +++++----- noodles-bcf/CHANGELOG.md | 6 ++++++ noodles-bcf/Cargo.toml | 8 ++++---- noodles-bgzf/CHANGELOG.md | 2 +- noodles-bgzf/Cargo.toml | 2 +- noodles-cram/CHANGELOG.md | 6 ++++++ noodles-cram/Cargo.toml | 10 +++++----- noodles-csi/CHANGELOG.md | 6 ++++++ noodles-csi/Cargo.toml | 4 ++-- noodles-fasta/CHANGELOG.md | 6 ++++++ noodles-fasta/Cargo.toml | 4 ++-- noodles-gff/CHANGELOG.md | 6 ++++++ noodles-gff/Cargo.toml | 6 +++--- noodles-gtf/CHANGELOG.md | 6 ++++++ noodles-gtf/Cargo.toml | 6 +++--- noodles-sam/CHANGELOG.md | 2 +- noodles-sam/Cargo.toml | 6 +++--- noodles-tabix/CHANGELOG.md | 6 ++++++ noodles-tabix/Cargo.toml | 6 +++--- noodles-util/CHANGELOG.md | 6 ++++++ noodles-util/Cargo.toml | 18 +++++++++--------- noodles-vcf/CHANGELOG.md | 2 +- noodles-vcf/Cargo.toml | 8 ++++---- noodles/CHANGELOG.md | 15 +++++++++++++++ noodles/Cargo.toml | 24 ++++++++++++------------ 27 files changed, 124 insertions(+), 61 deletions(-) diff --git a/README.md b/README.md index 4913e0eb1..4a2bce451 100644 --- a/README.md +++ b/README.md @@ -20,7 +20,7 @@ list; and formats, listed as [features]. For example, to work with the BAM format, enable the `bam` feature. ```toml -noodles = { version = "0.49.0", features = ["bam"] } +noodles = { version = "0.50.0", features = ["bam"] } ``` Each enabled feature can then be imported by its re-exported name, e.g., diff --git a/noodles-bam/CHANGELOG.md b/noodles-bam/CHANGELOG.md index 13bdad749..a2185d374 100644 --- a/noodles-bam/CHANGELOG.md +++ b/noodles-bam/CHANGELOG.md @@ -1,6 +1,6 @@ # Changelog -## Unreleased +## 0.44.0 - 2023-08-31 ### Added diff --git a/noodles-bam/Cargo.toml b/noodles-bam/Cargo.toml index f1a36bac7..0c3e2bf07 100644 --- a/noodles-bam/Cargo.toml +++ b/noodles-bam/Cargo.toml @@ -1,6 +1,6 @@ [package] name = "noodles-bam" -version = "0.43.0" +version = "0.44.0" authors = ["Michael Macias "] license.workspace = true edition.workspace = true @@ -20,13 +20,13 @@ bytes.workspace = true futures = { workspace = true, optional = true, features = ["std"] } tokio = { workspace = true, optional = true, features = ["fs", "io-util"] } -noodles-bgzf = { path = "../noodles-bgzf", version = "0.23.0" } +noodles-bgzf = { path = "../noodles-bgzf", version = "0.24.0" } noodles-core = { path = "../noodles-core", version = "0.12.0" } -noodles-csi = { path = "../noodles-csi", version = "0.23.0" } -noodles-sam = { path = "../noodles-sam", version = "0.40.0" } +noodles-csi = { path = "../noodles-csi", version = "0.24.0" } +noodles-sam = { path = "../noodles-sam", version = "0.41.0" } [dev-dependencies] -noodles-sam = { path = "../noodles-sam", version = "0.40.0", features = ["async"] } +noodles-sam = { path = "../noodles-sam", version = "0.41.0", features = ["async"] } tokio = { workspace = true, features = ["io-std", "macros", "rt-multi-thread"] } [package.metadata.docs.rs] diff --git a/noodles-bcf/CHANGELOG.md b/noodles-bcf/CHANGELOG.md index 67659d97c..7e0a1011f 100644 --- a/noodles-bcf/CHANGELOG.md +++ b/noodles-bcf/CHANGELOG.md @@ -1,5 +1,11 @@ # Changelog +## 0.35.0 - 2023-08-31 + +### Changed + + * bcf: Sync dependencies. + ## 0.34.0 - 2023-08-24 ### Changed diff --git a/noodles-bcf/Cargo.toml b/noodles-bcf/Cargo.toml index 38a69fad0..44a4238ca 100644 --- a/noodles-bcf/Cargo.toml +++ b/noodles-bcf/Cargo.toml @@ -1,6 +1,6 @@ [package] name = "noodles-bcf" -version = "0.34.0" +version = "0.35.0" authors = ["Michael Macias "] license.workspace = true edition.workspace = true @@ -16,10 +16,10 @@ async = ["dep:futures", "dep:tokio", "noodles-bgzf/async", "noodles-csi/async"] [dependencies] byteorder.workspace = true indexmap.workspace = true -noodles-bgzf = { path = "../noodles-bgzf", version = "0.23.0" } +noodles-bgzf = { path = "../noodles-bgzf", version = "0.24.0" } noodles-core = { path = "../noodles-core", version = "0.12.0" } -noodles-csi = { path = "../noodles-csi", version = "0.23.0" } -noodles-vcf = { path = "../noodles-vcf", version = "0.37.0" } +noodles-csi = { path = "../noodles-csi", version = "0.24.0" } +noodles-vcf = { path = "../noodles-vcf", version = "0.38.0" } futures = { workspace = true, optional = true, features = ["std"] } tokio = { workspace = true, optional = true, features = ["io-util"] } diff --git a/noodles-bgzf/CHANGELOG.md b/noodles-bgzf/CHANGELOG.md index 34239e6bb..66c7f662d 100644 --- a/noodles-bgzf/CHANGELOG.md +++ b/noodles-bgzf/CHANGELOG.md @@ -1,6 +1,6 @@ # Changelog -## Unreleased +## 0.24.0 - 2023-08-31 ### Added diff --git a/noodles-bgzf/Cargo.toml b/noodles-bgzf/Cargo.toml index 33c6c1a3e..d65aa114f 100644 --- a/noodles-bgzf/Cargo.toml +++ b/noodles-bgzf/Cargo.toml @@ -1,6 +1,6 @@ [package] name = "noodles-bgzf" -version = "0.23.0" +version = "0.24.0" authors = ["Michael Macias "] license.workspace = true edition.workspace = true diff --git a/noodles-cram/CHANGELOG.md b/noodles-cram/CHANGELOG.md index e46ac4b44..492839931 100644 --- a/noodles-cram/CHANGELOG.md +++ b/noodles-cram/CHANGELOG.md @@ -1,5 +1,11 @@ # Changelog +## 0.41.0 - 2023-08-31 + +### Changed + + * cram: Sync dependencies. + ## 0.40.0 - 2023-08-24 ### Changed diff --git a/noodles-cram/Cargo.toml b/noodles-cram/Cargo.toml index 4c325b938..5cdadd018 100644 --- a/noodles-cram/Cargo.toml +++ b/noodles-cram/Cargo.toml @@ -1,6 +1,6 @@ [package] name = "noodles-cram" -version = "0.40.0" +version = "0.41.0" authors = ["Michael Macias "] license.workspace = true edition.workspace = true @@ -21,10 +21,10 @@ bytes.workspace = true bzip2 = "0.4.4" flate2.workspace = true md-5 = "0.10.0" -noodles-bam = { path = "../noodles-bam", version = "0.43.0" } +noodles-bam = { path = "../noodles-bam", version = "0.44.0" } noodles-core = { path = "../noodles-core", version = "0.12.0" } -noodles-fasta = { path = "../noodles-fasta", version = "0.28.0" } -noodles-sam = { path = "../noodles-sam", version = "0.40.0" } +noodles-fasta = { path = "../noodles-fasta", version = "0.29.0" } +noodles-sam = { path = "../noodles-sam", version = "0.41.0" } xz2 = "0.1.6" async-compression = { version = "0.4.0", optional = true, features = ["gzip", "tokio"] } @@ -35,7 +35,7 @@ tokio = { workspace = true, optional = true, features = ["fs", "io-util"] } libdeflater = { workspace = true, optional = true } [dev-dependencies] -noodles-sam = { path = "../noodles-sam", version = "0.40.0", features = ["async"] } +noodles-sam = { path = "../noodles-sam", version = "0.41.0", features = ["async"] } tokio = { workspace = true, features = ["io-std", "macros", "rt-multi-thread"] } [package.metadata.docs.rs] diff --git a/noodles-csi/CHANGELOG.md b/noodles-csi/CHANGELOG.md index 140c76e3d..e5cef8e47 100644 --- a/noodles-csi/CHANGELOG.md +++ b/noodles-csi/CHANGELOG.md @@ -1,5 +1,11 @@ # Changelog +## 0.24.0 - 2023-08-31 + +### Changed + + * csi: Sync dependencies. + ## 0.23.0 - 2023-08-17 ### Changed diff --git a/noodles-csi/Cargo.toml b/noodles-csi/Cargo.toml index 11e90aa6e..f79efb3d9 100644 --- a/noodles-csi/Cargo.toml +++ b/noodles-csi/Cargo.toml @@ -1,6 +1,6 @@ [package] name = "noodles-csi" -version = "0.23.0" +version = "0.24.0" authors = ["Michael Macias "] license.workspace = true edition.workspace = true @@ -17,7 +17,7 @@ async = ["dep:tokio", "noodles-bgzf/async"] bit-vec.workspace = true byteorder.workspace = true indexmap.workspace = true -noodles-bgzf = { path = "../noodles-bgzf", version = "0.23.0" } +noodles-bgzf = { path = "../noodles-bgzf", version = "0.24.0" } noodles-core = { path = "../noodles-core", version = "0.12.0" } tokio = { workspace = true, optional = true, features = ["fs", "io-util"] } diff --git a/noodles-fasta/CHANGELOG.md b/noodles-fasta/CHANGELOG.md index bf521cfc5..c1446f9b9 100644 --- a/noodles-fasta/CHANGELOG.md +++ b/noodles-fasta/CHANGELOG.md @@ -1,5 +1,11 @@ # Changelog +## 0.29.0 - 2023-08-31 + +### Changed + + * fasta: Sync dependencies. + ## 0.28.0 - 2023-08-17 ### Changed diff --git a/noodles-fasta/Cargo.toml b/noodles-fasta/Cargo.toml index 4f08ce661..6dc56a690 100644 --- a/noodles-fasta/Cargo.toml +++ b/noodles-fasta/Cargo.toml @@ -1,6 +1,6 @@ [package] name = "noodles-fasta" -version = "0.28.0" +version = "0.29.0" authors = ["Michael Macias "] license.workspace = true edition.workspace = true @@ -16,7 +16,7 @@ async = ["dep:tokio"] [dependencies] bytes.workspace = true memchr.workspace = true -noodles-bgzf = { path = "../noodles-bgzf", version = "0.23.0" } +noodles-bgzf = { path = "../noodles-bgzf", version = "0.24.0" } noodles-core = { path = "../noodles-core", version = "0.12.0" } tokio = { workspace = true, optional = true, features = ["io-util"] } diff --git a/noodles-gff/CHANGELOG.md b/noodles-gff/CHANGELOG.md index 399c7b5d1..9804f8c96 100644 --- a/noodles-gff/CHANGELOG.md +++ b/noodles-gff/CHANGELOG.md @@ -1,5 +1,11 @@ # Changelog +## 0.20.0 - 2023-08-31 + +### Changed + + * gff: Sync dependencies. + ## 0.19.1 - 2023-08-24 ### Fixed diff --git a/noodles-gff/Cargo.toml b/noodles-gff/Cargo.toml index 6b2b98488..facfc726b 100644 --- a/noodles-gff/Cargo.toml +++ b/noodles-gff/Cargo.toml @@ -1,6 +1,6 @@ [package] name = "noodles-gff" -version = "0.19.1" +version = "0.20.0" authors = ["Michael Macias "] license.workspace = true edition.workspace = true @@ -12,7 +12,7 @@ documentation = "https://docs.rs/noodles-gff" [dependencies] indexmap.workspace = true -noodles-bgzf = { path = "../noodles-bgzf", version = "0.23.0" } +noodles-bgzf = { path = "../noodles-bgzf", version = "0.24.0" } noodles-core = { path = "../noodles-core", version = "0.12.0" } -noodles-csi = { path = "../noodles-csi", version = "0.23.0" } +noodles-csi = { path = "../noodles-csi", version = "0.24.0" } percent-encoding.workspace = true diff --git a/noodles-gtf/CHANGELOG.md b/noodles-gtf/CHANGELOG.md index b1b091fce..a3d20d9c3 100644 --- a/noodles-gtf/CHANGELOG.md +++ b/noodles-gtf/CHANGELOG.md @@ -1,5 +1,11 @@ # Changelog +## 0.16.0 - 2023-08-31 + +### Changed + + * gtf: Sync dependencies. + ## 0.15.0 - 2023-08-17 ### Changed diff --git a/noodles-gtf/Cargo.toml b/noodles-gtf/Cargo.toml index b8e7ff240..f5fbd932d 100644 --- a/noodles-gtf/Cargo.toml +++ b/noodles-gtf/Cargo.toml @@ -1,6 +1,6 @@ [package] name = "noodles-gtf" -version = "0.15.0" +version = "0.16.0" authors = ["Michael Macias "] license.workspace = true edition.workspace = true @@ -11,6 +11,6 @@ repository = "https://github.com/zaeleus/noodles" documentation = "https://docs.rs/noodles-gtf" [dependencies] -noodles-bgzf = { path = "../noodles-bgzf", version = "0.23.0" } +noodles-bgzf = { path = "../noodles-bgzf", version = "0.24.0" } noodles-core = { path = "../noodles-core", version = "0.12.0" } -noodles-csi = { path = "../noodles-csi", version = "0.23.0" } +noodles-csi = { path = "../noodles-csi", version = "0.24.0" } diff --git a/noodles-sam/CHANGELOG.md b/noodles-sam/CHANGELOG.md index 2b11b2295..2df9426e5 100644 --- a/noodles-sam/CHANGELOG.md +++ b/noodles-sam/CHANGELOG.md @@ -1,6 +1,6 @@ # Changelog -## Unreleased +## 0.41.0 - 2023-08-31 ### Added diff --git a/noodles-sam/Cargo.toml b/noodles-sam/Cargo.toml index d66d50dc3..95da1071d 100644 --- a/noodles-sam/Cargo.toml +++ b/noodles-sam/Cargo.toml @@ -1,6 +1,6 @@ [package] name = "noodles-sam" -version = "0.40.0" +version = "0.41.0" authors = ["Michael Macias "] license.workspace = true edition.workspace = true @@ -18,9 +18,9 @@ bitflags.workspace = true indexmap.workspace = true lexical-core = "0.8.5" memchr.workspace = true -noodles-bgzf = { path = "../noodles-bgzf", version = "0.23.0" } +noodles-bgzf = { path = "../noodles-bgzf", version = "0.24.0" } noodles-core = { path = "../noodles-core", version = "0.12.0" } -noodles-csi = { path = "../noodles-csi", version = "0.23.0" } +noodles-csi = { path = "../noodles-csi", version = "0.24.0" } futures = { workspace = true, optional = true, features = ["std"] } tokio = { workspace = true, optional = true, features = ["io-util"] } diff --git a/noodles-tabix/CHANGELOG.md b/noodles-tabix/CHANGELOG.md index 2e8bf0fbe..48129cc18 100644 --- a/noodles-tabix/CHANGELOG.md +++ b/noodles-tabix/CHANGELOG.md @@ -1,5 +1,11 @@ # Changelog +## 0.29.0 - 2023-08-31 + +### Changed + + * tabix: Sync dependencies. + ## 0.28.0 - 2023-08-24 ### Changed diff --git a/noodles-tabix/Cargo.toml b/noodles-tabix/Cargo.toml index 1ade6f0d1..a79b2d9f3 100644 --- a/noodles-tabix/Cargo.toml +++ b/noodles-tabix/Cargo.toml @@ -1,6 +1,6 @@ [package] name = "noodles-tabix" -version = "0.28.0" +version = "0.29.0" authors = ["Michael Macias "] license.workspace = true edition.workspace = true @@ -16,9 +16,9 @@ async = ["dep:tokio", "noodles-bgzf/async"] [dependencies] bit-vec.workspace = true byteorder.workspace = true -noodles-bgzf = { path = "../noodles-bgzf", version = "0.23.0" } +noodles-bgzf = { path = "../noodles-bgzf", version = "0.24.0" } noodles-core = { path = "../noodles-core", version = "0.12.0" } -noodles-csi = { path = "../noodles-csi", version = "0.23.0" } +noodles-csi = { path = "../noodles-csi", version = "0.24.0" } tokio = { workspace = true, optional = true, features = ["fs", "io-util"] } diff --git a/noodles-util/CHANGELOG.md b/noodles-util/CHANGELOG.md index 25c206f05..fe6216e77 100644 --- a/noodles-util/CHANGELOG.md +++ b/noodles-util/CHANGELOG.md @@ -1,5 +1,11 @@ # Changelog +## 0.22.0 - 2023-08-31 + +### Changed + + * util: Sync dependencies. + ## 0.21.0 - 2023-08-24 ### Changed diff --git a/noodles-util/Cargo.toml b/noodles-util/Cargo.toml index 9418e75ca..059b549a0 100644 --- a/noodles-util/Cargo.toml +++ b/noodles-util/Cargo.toml @@ -1,6 +1,6 @@ [package] name = "noodles-util" -version = "0.21.0" +version = "0.22.0" authors = ["Michael Macias "] license.workspace = true edition.workspace = true @@ -30,15 +30,15 @@ variant = [ [dependencies] flate2 = { workspace = true } -noodles-bam = { path = "../noodles-bam", version = "0.43.0", optional = true } -noodles-bcf = { path = "../noodles-bcf", version = "0.34.0", optional = true } -noodles-bgzf = { path = "../noodles-bgzf", version = "0.23.0", optional = true } +noodles-bam = { path = "../noodles-bam", version = "0.44.0", optional = true } +noodles-bcf = { path = "../noodles-bcf", version = "0.35.0", optional = true } +noodles-bgzf = { path = "../noodles-bgzf", version = "0.24.0", optional = true } noodles-core = { path = "../noodles-core", version = "0.12.0", optional = true } -noodles-cram = { path = "../noodles-cram", version = "0.40.0", optional = true } -noodles-csi = { path = "../noodles-csi", version = "0.23.0", optional = true } -noodles-fasta = { path = "../noodles-fasta", version = "0.28.0", optional = true } -noodles-sam = { path = "../noodles-sam", version = "0.40.0", optional = true } -noodles-vcf = { path = "../noodles-vcf", version = "0.37.0", optional = true } +noodles-cram = { path = "../noodles-cram", version = "0.41.0", optional = true } +noodles-csi = { path = "../noodles-csi", version = "0.24.0", optional = true } +noodles-fasta = { path = "../noodles-fasta", version = "0.29.0", optional = true } +noodles-sam = { path = "../noodles-sam", version = "0.41.0", optional = true } +noodles-vcf = { path = "../noodles-vcf", version = "0.38.0", optional = true } [package.metadata.docs.rs] all-features = true diff --git a/noodles-vcf/CHANGELOG.md b/noodles-vcf/CHANGELOG.md index 4b108571a..22c962363 100644 --- a/noodles-vcf/CHANGELOG.md +++ b/noodles-vcf/CHANGELOG.md @@ -1,6 +1,6 @@ # Changelog -## Unreleased +## 0.38.0 - 2023-08-31 ### Added diff --git a/noodles-vcf/Cargo.toml b/noodles-vcf/Cargo.toml index 05e283abb..e8dea4946 100644 --- a/noodles-vcf/Cargo.toml +++ b/noodles-vcf/Cargo.toml @@ -1,6 +1,6 @@ [package] name = "noodles-vcf" -version = "0.37.0" +version = "0.38.0" authors = ["Michael Macias "] license.workspace = true edition.workspace = true @@ -16,10 +16,10 @@ async = ["dep:futures", "dep:tokio", "noodles-bgzf/async", "noodles-tabix/async" [dependencies] indexmap.workspace = true memchr.workspace = true -noodles-bgzf = { path = "../noodles-bgzf", version = "0.23.0" } +noodles-bgzf = { path = "../noodles-bgzf", version = "0.24.0" } noodles-core = { path = "../noodles-core", version = "0.12.0" } -noodles-csi = { path = "../noodles-csi", version = "0.23.0" } -noodles-tabix = { path = "../noodles-tabix", version = "0.28.0" } +noodles-csi = { path = "../noodles-csi", version = "0.24.0" } +noodles-tabix = { path = "../noodles-tabix", version = "0.29.0" } percent-encoding.workspace = true futures = { workspace = true, optional = true, features = ["std"] } diff --git a/noodles/CHANGELOG.md b/noodles/CHANGELOG.md index 7b8313c7e..8d79986ef 100644 --- a/noodles/CHANGELOG.md +++ b/noodles/CHANGELOG.md @@ -1,5 +1,20 @@ # Changelog +## 0.50.0 - 2023-08-31 + + * [noodles-bam 0.44.0](https://github.com/zaeleus/noodles/blob/noodles-bam-0.44.0/noodles-bam/CHANGELOG.md) + * [noodles-bcf 0.35.0](https://github.com/zaeleus/noodles/blob/noodles-bcf-0.35.0/noodles-bcf/CHANGELOG.md) + * [noodles-bgzf 0.24.0](https://github.com/zaeleus/noodles/blob/noodles-bgzf-0.24.0/noodles-bgzf/CHANGELOG.md) + * [noodles-cram 0.41.0](https://github.com/zaeleus/noodles/blob/noodles-cram-0.41.0/noodles-cram/CHANGELOG.md) + * [noodles-csi 0.24.0](https://github.com/zaeleus/noodles/blob/noodles-csi-0.24.0/noodles-csi/CHANGELOG.md) + * [noodles-fasta 0.29.0](https://github.com/zaeleus/noodles/blob/noodles-fasta-0.29.0/noodles-fasta/CHANGELOG.md) + * [noodles-gff 0.20.0](https://github.com/zaeleus/noodles/blob/noodles-gff-0.20.0/noodles-gff/CHANGELOG.md) + * [noodles-gtf 0.16.0](https://github.com/zaeleus/noodles/blob/noodles-gtf-0.16.0/noodles-gtf/CHANGELOG.md) + * [noodles-sam 0.41.0](https://github.com/zaeleus/noodles/blob/noodles-sam-0.41.0/noodles-sam/CHANGELOG.md) + * [noodles-tabix 0.29.0](https://github.com/zaeleus/noodles/blob/noodles-tabix-0.29.0/noodles-tabix/CHANGELOG.md) + * [noodles-util 0.22.0](https://github.com/zaeleus/noodles/blob/noodles-util-0.22.0/noodles-util/CHANGELOG.md) + * [noodles-vcf 0.38.0](https://github.com/zaeleus/noodles/blob/noodles-vcf-0.38.0/noodles-vcf/CHANGELOG.md) + ## 0.49.0 - 2023-08-24 * [noodles-bam 0.43.0](https://github.com/zaeleus/noodles/blob/noodles-bam-0.43.0/noodles-bam/CHANGELOG.md) diff --git a/noodles/Cargo.toml b/noodles/Cargo.toml index f79b1b32b..fedef3e52 100644 --- a/noodles/Cargo.toml +++ b/noodles/Cargo.toml @@ -1,6 +1,6 @@ [package] name = "noodles" -version = "0.49.0" +version = "0.50.0" authors = ["Michael Macias "] license.workspace = true edition.workspace = true @@ -12,22 +12,22 @@ documentation = "https://docs.rs/noodles" readme = "../README.md" [dependencies] -noodles-bam = { path = "../noodles-bam", version = "0.43.0", optional = true } -noodles-bcf = { path = "../noodles-bcf", version = "0.34.0", optional = true } +noodles-bam = { path = "../noodles-bam", version = "0.44.0", optional = true } +noodles-bcf = { path = "../noodles-bcf", version = "0.35.0", optional = true } noodles-bed = { path = "../noodles-bed", version = "0.10.0", optional = true } -noodles-bgzf = { path = "../noodles-bgzf", version = "0.23.0", optional = true } +noodles-bgzf = { path = "../noodles-bgzf", version = "0.24.0", optional = true } noodles-core = { path = "../noodles-core", version = "0.12.0", optional = true } -noodles-cram = { path = "../noodles-cram", version = "0.40.0", optional = true } -noodles-csi = { path = "../noodles-csi", version = "0.23.0", optional = true } -noodles-fasta = { path = "../noodles-fasta", version = "0.28.0", optional = true } +noodles-cram = { path = "../noodles-cram", version = "0.41.0", optional = true } +noodles-csi = { path = "../noodles-csi", version = "0.24.0", optional = true } +noodles-fasta = { path = "../noodles-fasta", version = "0.29.0", optional = true } noodles-fastq = { path = "../noodles-fastq", version = "0.8.0", optional = true } -noodles-gff = { path = "../noodles-gff", version = "0.19.1", optional = true } -noodles-gtf = { path = "../noodles-gtf", version = "0.15.0", optional = true } +noodles-gff = { path = "../noodles-gff", version = "0.20.0", optional = true } +noodles-gtf = { path = "../noodles-gtf", version = "0.16.0", optional = true } noodles-htsget = { path = "../noodles-htsget", version = "0.2.0", optional = true } noodles-refget = { path = "../noodles-refget", version = "0.1.0", optional = true } -noodles-sam = { path = "../noodles-sam", version = "0.40.0", optional = true } -noodles-tabix = { path = "../noodles-tabix", version = "0.28.0", optional = true } -noodles-vcf = { path = "../noodles-vcf", version = "0.37.0", optional = true } +noodles-sam = { path = "../noodles-sam", version = "0.41.0", optional = true } +noodles-tabix = { path = "../noodles-tabix", version = "0.29.0", optional = true } +noodles-vcf = { path = "../noodles-vcf", version = "0.38.0", optional = true } [features] default = []