removed ols4-backend-deployment

README.md

@@ -1,2 +1,56 @@
 # semlookp-deployment
 Semantic Lookup Platform - Deployment Configuration
+
+
+## Deploy OLS4 backend
+
+### Generate data
+
+Enter the OLS4 project. Do as described [here](https://github.com/EBISPOT/ols4?tab=readme-ov-file#deploying-ols4).
+
+In short:
+- copy the OWL or RDFS ontology file to the testcases folder
+- Then make a new config file for your ontology in dataload/configs (you can use efo.json as a template)
+- For the ontology_purl property in the config, use e.g. file:///opt/dataload/testcases/myontology.owl if your ontology is in testcases/myontology.owl
+
+```bash
+export OLS4_CONFIG=./dataload/configs/meshd-v1.json
+docker compose up
+```
+
+The data is generated and saved locally in /var/lib/docker/volumes/<your_project_name>/_data
+
+### Create data archives for Solr and Neo4j
+```bash
+sudo tar --use-compress-program="pigz --fast --recursive" -cf /neo4j.tgz -C /var/lib/docker/volumes/<your project name>/_data .
+sudo tar --use-compress-program="pigz --fast --recursive" -cf /solr.tgz -C /var/lib/docker/volumes/<your project name>/_data .
+```
+
+Eventually, the permissions need to be changed:
+```bash
+sudo chown -R username:username /neo4j.tgz
+sudo chown -R username:username /solr.tgz
+```
+
+### Deploy ols4-dataserver
+```bash
+helm repo add semlookp-deployment https://zbmed.github.io/semlookp-deployment/
+helm install ols4-dataserver semlookp-deployment/ols4-dataserver
+```
+
+### Upload data to ols4-dataserver
+```bash
+kubectl cp /neo4j-meshd-v1.tgz ols4-dataserver-7d9d88cd86-n98fb:/usr/share/nginx/html/neo4j.tgz
+kubectl cp /solr-meshd-v1.tgz ols4-dataserver-7d9d88cd86-n98fb:/usr/share/nginx/html/solr.tgz
+```
+
+### Deploy ols4-backend
+```bash
+helm install <your release name> \
+--set-json='ingress.dns="<your domain>"'  \
+--set-json='imageTag="dev"'  \
+--set-json='backend.context="/ols4"'  \
+--set-json='backend.neo4jTarballUrl="http://ols4-dataserver/neo4j.tgz"'  \
+--set-json='backend.solrTarballUrl="http://ols4-dataserver/solr.tgz"'  \
+semlookp-deployment/k8s/ols4-backend
+```