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When specifying flux bounds in media and limits, the fixed key can now be used when lower and upper limits are the same.
New column in output of excelexport and tableexport commands to indicate if reactions and compounds are in the model.
Zero mass compounds are now omitted from the output of the massconsistency command.
When exporting SBML file using the sbmlexport command, the exported compounds and reactions now have IDs that are based on the YAML model IDs. Characters that are not allowed in SBML IDs are transformed in a way that is compatible with COBRA.