sbatch_script

#!/bin/bash
#SBATCH -o out
#SBATCH -p cpu 
#SBATCH -J r_m_1enh

if ! [ -d standart_file ]
then
	mkdir standart_file
	mkdir error_files

	cd standart_file
	cp ../Specific/*.prm .
	cp ../Specific/input* .
	mv input.make0_1 input.make
	mv input.key_1 input.key
	protein < input.make
	xyzpdb input.xyz
	$ROSETTA3/bin/relax.static.linuxgccrelease -in:file:s input.pdb  --thorough > /dev/null 2>&1
	mv input_0001.pdb input.pdb
	pdbxyz input.pdb
	printf 'A\n' | xyzint input.xyz_2
	cd ../
fi

while [ ! -f ./USPEX_IS_DONE ]; do
   date >> log
   matlab < USPEX.m  >> log
   sleep 200
done