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header_def_F_case.cpp
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header_def_F_case.cpp
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/*********************************************************************
*
* Copyright (C) 2021, Northwestern University
* See COPYRIGHT notice in top-level directory.
*
* This program is part of the E3SM I/O benchmark.
*
*********************************************************************/
#ifdef HAVE_CONFIG_H
#include <config.h>
#endif
#include <string.h> /* strlen() */
#include <assert.h>
#include <mpi.h>
#include <e3sm_io.h>
#include <e3sm_io_err.h>
#include <e3sm_io_case.hpp>
#include <e3sm_io_driver.hpp>
/*----< add_gattrs() >-------------------------------------------------------*/
/* add global attributes */
static
int add_gattrs(e3sm_io_config &cfg,
e3sm_io_decom &decom,
e3sm_io_driver &driver,
case_meta *cmeta,
int ncid)
{
std::string prefix("");
int err, nprocs;
/* save number of processes as global attributes */
if (cfg.strategy == blob) {
if (cfg.api == adios) {
PUT_GATTR_INT("/__pio__/fillmode", 256)
prefix = "/__pio__/global/";
}
else {
MPI_Comm_size(cfg.io_comm, &nprocs);
PUT_GATTR_INT("global_nprocs", nprocs)
PUT_GATTR_INT("num_decompositions", decom.num_decomp)
PUT_GATTR_INT("num_subfiles", cfg.num_subfiles)
}
}
/* save number of processes as global attributes */
PUT_GATTR_INT("ne", 120)
PUT_GATTR_INT("np", 21600)
PUT_GATTR_TXT("title", "EAM History file information")
PUT_GATTR_TXT("source", "E3SM Atmosphere Model")
PUT_GATTR_TXT("source_id", "025f820fce")
PUT_GATTR_TXT("product", "model-output")
PUT_GATTR_TXT("realm", "atmos")
PUT_GATTR_TXT("case", "FC5AV1C-H01A_ne120_oRRS18v3")
PUT_GATTR_TXT("username", "E3SM")
PUT_GATTR_TXT("hostname", "cori-knl")
PUT_GATTR_TXT("git_version", "025f820fce")
PUT_GATTR_TXT("history", "created on 06/10/21 11:59:48")
PUT_GATTR_TXT("Conventions", "CF-1.7")
PUT_GATTR_TXT("institution_id", "E3SM-Project")
PUT_GATTR_TXT("institution", "LLNL (Lawrence Livermore National Laboratory, Livermore, CA 94550, USA); ANL (Argonne National Laboratory, Argonne, IL 60439, USA); BNL (Brookhaven National Laboratory, Upton, NY 11973, USA); LANL (Los Alamos National Laboratory, Los Alamos, NM 87545, USA); LBNL (Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA); ORNL (Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA); PNNL (Pacific Northwest National Laboratory, Richland, WA 99352, USA); SNL (Sandia National Laboratories, Albuquerque,")
PUT_GATTR_TXT("contact", "[email protected]")
PUT_GATTR_TXT("initial_file", "/global/cfs/cdirs/e3sm/inputdata/atm/cam/inic/homme/cami_mam3_Linoz_0000-01-ne120np4_L72_c160318.nc")
PUT_GATTR_TXT("topography_file", "/global/cfs/cdirs/e3sm/inputdata/atm/cam/topo/USGS-gtopo30_ne120np4_16xdel2-PFC-consistentSGH.nc")
if (cfg.hist == h0)
PUT_GATTR_TXT("time_period_freq", "day_5")
else
PUT_GATTR_TXT("time_period_freq", "hour_1")
err_out:
return err;
}
/*----< def_var_decomp() >---------------------------------------------------*/
/* define decomposition variables. Blob I/O only */
int e3sm_io_case::def_var_decomp(e3sm_io_config &cfg,
e3sm_io_decom &decom,
e3sm_io_driver &driver,
case_meta *cmeta,
int ncid,
int dim_time,
int dim_nblobs,
int dim_max_nreqs[MAX_NUM_DECOMP],
int g_dimids[MAX_NUM_DECOMP][MAX_NDIMS])
{
char name[512];
int i, j, err=0, dimids[2];
var_meta *varp;
if (cfg.api == adios ) {
MPI_Offset one = 1;
for (j=0; j<decom.num_decomp; j++) {
int ival, piodims[MAX_NUM_DECOMP];
varp = vars + j;
sprintf (name, "/__pio__/decomp/%d", (j + 512));
err = driver.def_local_var(ncid, name, NC_INT64, 1,
decom.raw_nreqs+j, &varp->vid);
CHECK_ERR
for (i=0; i<decom.ndims[j]; i++)
piodims[i] = (int)decom.dims[j][i];
PUT_ATTR_INT("dimlen", decom.ndims[j], piodims)
PUT_ATTR_INT("ndims", 1, decom.ndims+j)
ival = 6;
PUT_ATTR_INT("piotype", 1, &ival)
varp = vars + decom.num_decomp + j;
sprintf (name, "/__pio__/track/num_decomp_block_writers/%d", (j + 512));
err = driver.def_local_var(ncid, name, NC_INT, 1,
&one, &varp->vid);
CHECK_ERR
}
err = driver.def_local_var(ncid, "/__pio__/info/nproc", NC_INT, 0,
NULL, &vars[2*decom.num_decomp].vid);
CHECK_ERR
err = driver.def_local_var(ncid, "/__pio__/info/block_nprocs", NC_INT, 0,
NULL, &vars[2*decom.num_decomp+1].vid);
CHECK_ERR
err = driver.def_local_var(ncid, "/__pio__/info/block_list", NC_INT, 1,
&one, &vars[2*decom.num_decomp+2].vid);
CHECK_ERR
}
else {
std::map<int, std::string> dnames;
varp = vars - 1;
for (i=0; i<decom.num_decomp; i++) {
dimids[0] = dim_nblobs;
dimids[1] = dim_max_nreqs[i];
sprintf(name, "D%d.nreqs", i+1);
DEF_VAR(name, NC_INT, 1, dimids, MPI_INT, -1)
PUT_ATTR_TXT("description", "Number of noncontiguous requests in individual blobs")
PUT_ATTR_INT("global_dimids", decom.ndims[i], g_dimids[i])
#ifdef GLOBAL_DIM_USE_STRING
name[0] = '\0';
for (j=0; j<decom.ndims[i]; j++) {
char dim_name[128];
ncmpi_inq_dimname(ncid, g_dimids[i][j], dim_name);
strcat(name, dim_name);
if (j < decom.ndims[i]-1) strcat(name,",");
}
PUT_ATTR_TXT("global_dims", name)
#endif
/* For PnetCDF blob I/O, it uses variable-centric blob layout
* strategy where there are are nprocs (or nblobs) blobs in the
* file space occupied by each variable. Thus, given N variables
* defined and each is partitioned among nprocs processes, there
* will be N*nprocs blobs in the NetCDF file. A blob contains all
* of a process's write requests to a variable.
*
* For HDF5 blob I/O, it uses process-centric blob layout strategy
* where there are nprocs blobs in the entire file. A blob contains
* all of a process's write requests to all variables.
*/
/* For PnetCDF blob I/O, the starting file offset of a variable's
* blob is calculated by
* variable's begin + D*.blob_start * variable's type size.
* A variable's begin and type are stored in the NetCDF file
* header.
*
* For HDF5 blob I/O, the calculation is more complicated, because
* the write amount of a process to a variable can be different
* from another process. The starting offset of a variable in a
* blob is calculated by
* 1. calculating the file starting offset of the blob. This
* requires to sum up the sizes of all blobs before it.
* 2. calculating the starting offset of a variable inside the
* blob. This requires to to sum up the write amounts to all
* variables defined before it.
* A less complicated approach is to additionally save the offsets
* of all variables inside all blobs. This requires additional
* N*nprocs integers. This is not implemented yet.
*
* Note NC_INT64 type is used here, but it can be NC_INT because
* none of E3SM variables is larger than 4B elements.
*/
sprintf(name, "D%d.blob_start", i+1);
DEF_VAR(name, NC_INT64, 1, dimids, MPI_INT, -1)
PUT_ATTR_TXT("description", "Starting array indices of individual blobs stored in a variable")
sprintf(name, "D%d.blob_count", i+1);
DEF_VAR(name, NC_INT64, 1, dimids, MPI_LONG_LONG, -1)
PUT_ATTR_TXT("description", "Number of contiguous array elements in individual blobs stored in a variable")
/* For PnetCDF blob I/O, the file offset of a write request to a
* variable inside a blob is calculated by
* the variable blob's file offset calculated above +
* D*.offsets[blob_id][request_number] * variable's type size
* A variable's begin and type are stored in NetCDF file header.
*
* For HDF5 blob I/O, the calculation is similar, i.e.
* the variable's file offset calculated above +
* D*.offsets[blob_id][request_number] * variable's type size
*
* Note NC_INT type is used here because none of E3SM variables is
* larger than 4B elements. In general, it can be NC_INT64.
*/
sprintf(name, "D%d.offsets", i+1);
DEF_VAR(name, NC_INT, 2, dimids, MPI_INT, -1)
PUT_ATTR_TXT("description", "Starting indices of flattened canonical noncontiguous requests of individual blobs")
sprintf(name, "D%d.lengths", i+1);
DEF_VAR(name, NC_INT, 2, dimids, MPI_INT, -1)
PUT_ATTR_TXT("description", "Number of elements of flattened canonical noncontiguous requests of individual blobs")
}
}
err_out:
return err;
}
/*----< def_F_case() >-------------------------------------------------------*/
int e3sm_io_case::def_F_case(e3sm_io_config &cfg,
e3sm_io_decom &decom,
e3sm_io_driver &driver,
int ncid) /* file ID */
{
int i, err, nprocs, dimids[3], mdims=1, nvars_decomp;
int dim_ncol, dim_time, dim_nbnd, dim_chars, dim_lev, dim_ilev, dim_nblobs;
int dim_nelems[MAX_NUM_DECOMP], dim_max_nreqs[MAX_NUM_DECOMP];
int g_dimids[MAX_NUM_DECOMP][MAX_NDIMS];
float fillv = 1.e+20f, missv = 1.e+20f;
std::map<int, std::string> dnames;
var_meta *varp;
case_meta *cmeta;
if (cfg.run_case == F) {
if (cfg.hist == h0) cmeta = &cfg.F_case_h0;
else cmeta = &cfg.F_case_h1;
} else if (cfg.run_case == I) {
if (cfg.hist == h0) cmeta = &cfg.I_case_h0;
else cmeta = &cfg.I_case_h1;
} else if (cfg.run_case == G)
cmeta = &cfg.G_case;
/* add global attributes */
err = add_gattrs(cfg, decom, driver, cmeta, ncid);
CHECK_ERR
/* define dimensions */
/*
nbnd = 2 ;
chars = 8 ;
lev = 72 ;
ilev = 73 ;
ncol = 866 ;
num_decomp = 3 ;
D1 : ncol
D2 : ncol
D3 : lev x ncol
*/
DEF_DIM("time", NC_UNLIMITED, &dim_time)
DEF_DIM("nbnd", 2, &dim_nbnd)
DEF_DIM("chars", 8, &dim_chars)
DEF_DIM("lev", decom.dims[2][0], &dim_lev)
DEF_DIM("ilev", decom.dims[2][0] + 1, &dim_ilev)
DEF_DIM("ncol", decom.dims[2][1], &dim_ncol)
if (cfg.strategy == blob && cfg.api != adios) {
char name[64];
g_dimids[0][0] = dim_ncol;
g_dimids[1][0] = dim_ncol;
g_dimids[2][0] = dim_lev; g_dimids[2][1] = dim_ncol;
/* additional dimensions to be used by decomposition variables */
MPI_Comm_size(cfg.sub_comm, &nprocs);
DEF_DIM("nblobs", (MPI_Offset)nprocs, &dim_nblobs)
for (i=0; i<decom.num_decomp; i++) {
sprintf(name, "D%d.nelems", i+1);
DEF_DIM(name, decom.nelems[i], &dim_nelems[i])
}
for (i=0; i<decom.num_decomp; i++) {
sprintf(name, "D%d.max_nreqs", i+1);
DEF_DIM(name, (MPI_Offset)decom.max_nreqs[i], &dim_max_nreqs[i])
}
for (i=0; i<decom.num_decomp; i++) {
fix_dimids[i] = dim_nelems[i];
rec_dimids[i][0] = dim_time;
rec_dimids[i][1] = dim_nelems[i];
}
}
/* define variables related to decompositions */
nvars_decomp = 0;
if (cfg.strategy == blob) {
if (cfg.api == adios)
nvars_decomp = (2 * decom.num_decomp) + 3;
else
nvars_decomp = NVARS_DECOMP * decom.num_decomp;
err = def_var_decomp(cfg, decom, driver, cmeta, ncid, dim_time,
dim_nblobs, dim_max_nreqs, g_dimids);
CHECK_ERR
}
/* For h0 file, there are 414 climate variables:
* 6 scalar variables + 408 array variables
* 15 fixed-size variables + 399 record variables
* 27 not partitioned + 387 partitioned
*
* For h1 file, there are 51 climate variables:
* 6 scalar variables + 45 array variables
* 15 fixed-size variables + 36 record variables
* 27 not partitioned + 24 partitioned
*/
varp = vars + nvars_decomp - 1;
/* The order of defining variables must follow the rule below in order to
* support the feature of using a single contiguous user buffers for all
* variables.
* 1. Define fixed-size variables before record variables.
* 2. Define variables of types: char, int, double, float.
*/
/* below 5 are fixed-size scalar climate variables of type int ---------*/
/* int ndbase */
DEF_VAR("ndbase", NC_INT, 0, NULL, MPI_INT, -1)
PUT_ATTR_TXT("long_name", "base day")
/* int nsbase */
DEF_VAR("nsbase", NC_INT, 0, NULL, MPI_INT, -1)
PUT_ATTR_TXT("long_name", "seconds of base day")
/* int nbdate */
DEF_VAR("nbdate", NC_INT, 0, NULL, MPI_INT, -1)
PUT_ATTR_TXT("long_name", "base date (YYYYMMDD)")
/* int nbsec */
DEF_VAR("nbsec", NC_INT, 0, NULL, MPI_INT, -1)
PUT_ATTR_TXT("long_name", "seconds of base date")
/* int mdt */
DEF_VAR("mdt", NC_INT, 0, NULL, MPI_INT, -1)
PUT_ATTR_TXT("long_name", "timestep")
PUT_ATTR_TXT("units", "s")
/* below 7 are fixed-size not-partitioned variables of type double -----*/
/* double lev(lev) */
DEF_VAR("lev", NC_DOUBLE, 1, &dim_lev, MPI_DOUBLE, -1)
PUT_ATTR_TXT("long_name", "hybrid level at midpoints (1000*(A+B))")
PUT_ATTR_TXT("units", "hPa")
PUT_ATTR_TXT("positive", "down")
PUT_ATTR_TXT("standard_name", "atmosphere_hybrid_sigma_pressure_coordinate")
PUT_ATTR_TXT("formula_terms", "a: hyam b: hybm p0: P0 ps: PS")
/* double hyam(lev) */
DEF_VAR("hyam", NC_DOUBLE, 1, &dim_lev, MPI_DOUBLE, -1)
PUT_ATTR_TXT("long_name", "hybrid A coefficient at layer midpoints")
/* double hybm(lev) */
DEF_VAR("hybm", NC_DOUBLE, 1, &dim_lev, MPI_DOUBLE, -1)
PUT_ATTR_TXT("long_name", "hybrid B coefficient at layer midpoints")
/* double P0 */
DEF_VAR("P0", NC_DOUBLE, 0, NULL, MPI_DOUBLE, -1)
PUT_ATTR_TXT("long_name", "reference pressure")
PUT_ATTR_TXT("units", "Pa")
/* double ilev(ilev) */
DEF_VAR("ilev", NC_DOUBLE, 1, &dim_ilev, MPI_DOUBLE, -1)
PUT_ATTR_TXT("long_name", "hybrid level at interfaces (1000*(A+B))")
PUT_ATTR_TXT("units", "hPa")
PUT_ATTR_TXT("positive", "down")
PUT_ATTR_TXT("standard_name", "atmosphere_hybrid_sigma_pressure_coordinate")
PUT_ATTR_TXT("formula_terms", "a: hyai b: hybi p0: P0 ps: PS")
/* double hyai(ilev) */
DEF_VAR("hyai", NC_DOUBLE, 1, &dim_ilev, MPI_DOUBLE, -1)
PUT_ATTR_TXT("long_name", "hybrid A coefficient at layer interfaces")
/* double hybi(ilev) */
DEF_VAR("hybi", NC_DOUBLE, 1, &dim_ilev, MPI_DOUBLE, -1)
PUT_ATTR_TXT("long_name", "hybrid B coefficient at layer interfaces")
/* below 3 are fixed-size partitioned variables of type double ------------*/
/* double lat(ncol) */
DEF_VAR("lat", NC_DOUBLE, 1, &dim_ncol, MPI_DOUBLE, 1)
PUT_ATTR_TXT("long_name", "latitude")
PUT_ATTR_TXT("units", "degrees_north")
/* double lon(ncol) */
DEF_VAR("lon", NC_DOUBLE, 1, &dim_ncol, MPI_DOUBLE, 1)
PUT_ATTR_TXT("long_name", "longitude")
PUT_ATTR_TXT("units", "degrees_east")
/* double area(ncol) */
DEF_VAR("area", NC_DOUBLE, 1, &dim_ncol, MPI_DOUBLE, 0)
PUT_ATTR_TXT("long_name", "gll grid areas")
/* below 2 are record climate variables of type char -------------------*/
/* char date_written(time, chars) */
dimids[0] = dim_time;
dimids[1] = dim_chars;
DEF_VAR("date_written", NC_CHAR, 2, dimids, MPI_CHAR, -1)
/* char time_written(time, chars) */
dimids[0] = dim_time;
dimids[1] = dim_chars;
DEF_VAR("time_written", NC_CHAR, 2, dimids, MPI_CHAR, -1)
/* below 5 are record climate variables of type int -------------------*/
/* int date(time) */
DEF_VAR("date", NC_INT, 1, &dim_time, MPI_INT, -1)
PUT_ATTR_TXT("long_name", "current date (YYYYMMDD)")
/* int datesec(time) */
DEF_VAR("datesec", NC_INT, 1, &dim_time, MPI_INT, -1)
PUT_ATTR_TXT("long_name", "current seconds of current date")
/* int ndcur(time) */
DEF_VAR("ndcur", NC_INT, 1, &dim_time, MPI_INT, -1)
PUT_ATTR_TXT("long_name", "current day (from base day)")
/* int nscur(time) */
DEF_VAR("nscur", NC_INT, 1, &dim_time, MPI_INT, -1)
PUT_ATTR_TXT("long_name", "current seconds of current day")
/* int nsteph(time) */
DEF_VAR("nsteph", NC_INT, 1, &dim_time, MPI_INT, -1)
PUT_ATTR_TXT("long_name", "current timestep")
/* below 8 are record climate variables of type double ---------------*/
/* double time(time) */
DEF_VAR("time", NC_DOUBLE, 1, &dim_time, MPI_DOUBLE, -1)
PUT_ATTR_TXT("long_name", "time")
PUT_ATTR_TXT("units", "days since 0001-01-01 00:00:00")
PUT_ATTR_TXT("calendar", "noleap")
PUT_ATTR_TXT("bounds", "time_bnds")
/* double time_bnds(time, nbnd) */
dimids[0] = dim_time;
dimids[1] = dim_nbnd;
DEF_VAR("time_bnds", NC_DOUBLE, 2, dimids, MPI_DOUBLE, -1)
PUT_ATTR_TXT("long_name", "time interval endpoints")
/* double co2vmr(time) */
DEF_VAR("co2vmr", NC_DOUBLE, 1, &dim_time, MPI_DOUBLE, -1)
PUT_ATTR_TXT("long_name", "co2 volume mixing ratio")
/* double ch4vmr(time) */
DEF_VAR("ch4vmr", NC_DOUBLE, 1, &dim_time, MPI_DOUBLE, -1)
PUT_ATTR_TXT("long_name", "ch4 volume mixing ratio")
/* double n2ovmr(time) */
DEF_VAR("n2ovmr", NC_DOUBLE, 1, &dim_time, MPI_DOUBLE, -1)
PUT_ATTR_TXT("long_name", "n2o volume mixing ratio")
/* double f11vmr(time) */
DEF_VAR("f11vmr", NC_DOUBLE, 1, &dim_time, MPI_DOUBLE, -1)
PUT_ATTR_TXT("long_name", "f11 volume mixing ratio")
/* double f12vmr(time) */
DEF_VAR("f12vmr", NC_DOUBLE, 1, &dim_time, MPI_DOUBLE, -1)
PUT_ATTR_TXT("long_name", "f12 volume mixing ratio")
/* double sol_tsi(time) */
DEF_VAR("sol_tsi", NC_DOUBLE, 1, &dim_time, MPI_DOUBLE, -1)
PUT_ATTR_TXT("long_name", "total solar irradiance")
PUT_ATTR_TXT("units", "W/m2")
/* below 384 are record climate variables of type float ----------------*/
if (cfg.hist == h0) {
/* float AEROD_v(time, ncol) */
dimids[0] = dim_time;
dimids[1] = dim_ncol;
DEF_VAR("AEROD_v", REC_XTYPE, 2, dimids, REC_ITYPE, 1)
PUT_ATTR_FILL(fillv)
PUT_ATTR_FLT1("missing_value", missv)
PUT_ATTR_TXT("units", "1")
PUT_ATTR_TXT("long_name", "Total Aerosol Optical Depth in visible band")
PUT_ATTR_TXT("cell_methods", "time: mean")
/* float ANRAIN(time, lev, ncol) */
dimids[0] = dim_time;
dimids[1] = dim_lev;
dimids[2] = dim_ncol;
DEF_VAR("ANRAIN", REC_XTYPE, 3, dimids, REC_ITYPE, 2)
PUT_ATTR_INT("mdims", 1, &mdims)
PUT_ATTR_TXT("units", "m-3")
PUT_ATTR_TXT("long_name", "Average rain number conc")
PUT_ATTR_TXT("cell_methods", "time: mean")
/* float ANSNOW(time, lev, ncol) */
dimids[0] = dim_time;
dimids[1] = dim_lev;
dimids[2] = dim_ncol;
DEF_VAR("ANSNOW", REC_XTYPE, 3, dimids, REC_ITYPE, 2)
PUT_ATTR_INT("mdims", 1, &mdims)
PUT_ATTR_TXT("units", "m-3")
PUT_ATTR_TXT("long_name", "Average snow number conc")
PUT_ATTR_TXT("cell_methods", "time: mean")
/* float AODABS(time, ncol) */
dimids[0] = dim_time;
dimids[1] = dim_ncol;
DEF_VAR("AODABS", REC_XTYPE, 2, dimids, REC_ITYPE, 1)
PUT_ATTR_FILL(fillv)
PUT_ATTR_FLT1("missing_value", missv)
PUT_ATTR_TXT("long_name", "Aerosol absorption optical depth 550 nm")
PUT_ATTR_TXT("standard_name", "atmosphere_absorption_optical_thickness_due_to_ambient_aerosol_particles")
PUT_ATTR_TXT("cell_methods", "time: mean")
/* float AODABSBC(time, ncol) */
dimids[0] = dim_time;
dimids[1] = dim_ncol;
DEF_VAR("AODABSBC", REC_XTYPE, 2, dimids, REC_ITYPE, 1)
PUT_ATTR_FILL(fillv)
PUT_ATTR_FLT1("missing_value", missv)
PUT_ATTR_TXT("long_name", "Aerosol absorption optical depth 550 nm from BC")
PUT_ATTR_TXT("cell_methods", "time: mean")
/* float AODALL(time, ncol) */
dimids[0] = dim_time;
dimids[1] = dim_ncol;
DEF_VAR("AODALL", REC_XTYPE, 2, dimids, REC_ITYPE, 1)
PUT_ATTR_FILL(fillv)
PUT_ATTR_FLT1("missing_value", missv)
PUT_ATTR_TXT("long_name", "AOD 550 nm for all time and species")
PUT_ATTR_TXT("cell_methods", "time: mean")
/* float AODBC(time, ncol) */
dimids[0] = dim_time;
dimids[1] = dim_ncol;
DEF_VAR("AODBC", REC_XTYPE, 2, dimids, REC_ITYPE, 1)
PUT_ATTR_FILL(fillv)
PUT_ATTR_FLT1("missing_value", missv)
PUT_ATTR_TXT("long_name", "Aerosol optical depth 550 nm from BC")
PUT_ATTR_TXT("cell_methods", "time: mean")
/* float AODDUST(time, ncol) */
dimids[0] = dim_time;
dimids[1] = dim_ncol;
DEF_VAR("AODDUST", REC_XTYPE, 2, dimids, REC_ITYPE, 1)
PUT_ATTR_FILL(fillv)
PUT_ATTR_FLT1("missing_value", missv)
PUT_ATTR_TXT("long_name", "Aerosol optical depth 550 nm from dust")
PUT_ATTR_TXT("cell_methods", "time: mean")
/* float AODDUST1(time, ncol) */
dimids[0] = dim_time;
dimids[1] = dim_ncol;
DEF_VAR("AODDUST1", REC_XTYPE, 2, dimids, REC_ITYPE, 1)
PUT_ATTR_FILL(fillv)
PUT_ATTR_FLT1("missing_value", missv)
PUT_ATTR_TXT("long_name", "Aerosol optical depth 550 nm model 1 from dust")
PUT_ATTR_TXT("cell_methods", "time: mean")
/* float AODDUST3(time, ncol) */
dimids[0] = dim_time;
dimids[1] = dim_ncol;
DEF_VAR("AODDUST3", REC_XTYPE, 2, dimids, REC_ITYPE, 1)
PUT_ATTR_FILL(fillv)
PUT_ATTR_FLT1("missing_value", missv)
PUT_ATTR_TXT("long_name", "Aerosol optical depth 550 nm model 3 from dust")
PUT_ATTR_TXT("cell_methods", "time: mean")
/* float AODDUST4(time, ncol) */
dimids[0] = dim_time;
dimids[1] = dim_ncol;
DEF_VAR("AODDUST4", REC_XTYPE, 2, dimids, REC_ITYPE, 1)
PUT_ATTR_FILL(fillv)
PUT_ATTR_FLT1("missing_value", missv)
PUT_ATTR_TXT("long_name", "Aerosol optical depth 550 nm model 4 from dust")
PUT_ATTR_TXT("cell_methods", "time: mean")
/* float AODMODE1(time, ncol) */
dimids[0] = dim_time;
dimids[1] = dim_ncol;
DEF_VAR("AODMODE1", REC_XTYPE, 2, dimids, REC_ITYPE, 1)
PUT_ATTR_FILL(fillv)
PUT_ATTR_FLT1("missing_value", missv)
PUT_ATTR_TXT("long_name", "Aerosol optical depth 550 nm mode 1")
PUT_ATTR_TXT("cell_methods", "time: mean")
/* float AODMODE2(time, ncol) */
dimids[0] = dim_time;
dimids[1] = dim_ncol;
DEF_VAR("AODMODE2", REC_XTYPE, 2, dimids, REC_ITYPE, 1)
PUT_ATTR_FILL(fillv)
PUT_ATTR_FLT1("missing_value", missv)
PUT_ATTR_TXT("long_name", "Aerosol optical depth 550 nm mode 2")
PUT_ATTR_TXT("cell_methods", "time: mean")
/* float AODMODE3(time, ncol) */
dimids[0] = dim_time;
dimids[1] = dim_ncol;
DEF_VAR("AODMODE3", REC_XTYPE, 2, dimids, REC_ITYPE, 1)
PUT_ATTR_FILL(fillv)
PUT_ATTR_FLT1("missing_value", missv)
PUT_ATTR_TXT("long_name", "Aerosol optical depth 550 nm mode 3")
PUT_ATTR_TXT("cell_methods", "time: mean")
/* float AODMODE4(time, ncol) */
dimids[0] = dim_time;
dimids[1] = dim_ncol;
DEF_VAR("AODMODE4", REC_XTYPE, 2, dimids, REC_ITYPE, 1)
PUT_ATTR_FILL(fillv)
PUT_ATTR_FLT1("missing_value", missv)
PUT_ATTR_TXT("long_name", "Aerosol optical depth 550 nm mode 4")
PUT_ATTR_TXT("cell_methods", "time: mean")
/* float AODNIR(time, ncol) */
dimids[0] = dim_time;
dimids[1] = dim_ncol;
DEF_VAR("AODNIR", REC_XTYPE, 2, dimids, REC_ITYPE, 1)
PUT_ATTR_FILL(fillv)
PUT_ATTR_FLT1("missing_value", missv)
PUT_ATTR_TXT("long_name", "Aerosol optical depth 850 nm")
PUT_ATTR_TXT("cell_methods", "time: mean")
/* float AODPOM(time, ncol) */
dimids[0] = dim_time;
dimids[1] = dim_ncol;
DEF_VAR("AODPOM", REC_XTYPE, 2, dimids, REC_ITYPE, 1)
PUT_ATTR_FILL(fillv)
PUT_ATTR_FLT1("missing_value", missv)
PUT_ATTR_TXT("long_name", "Aerosol optical depth 550 nm from POM")
PUT_ATTR_TXT("cell_methods", "time: mean")
/* float AODSO4(time, ncol) */
dimids[0] = dim_time;
dimids[1] = dim_ncol;
DEF_VAR("AODSO4", REC_XTYPE, 2, dimids, REC_ITYPE, 1)
PUT_ATTR_FILL(fillv)
PUT_ATTR_FLT1("missing_value", missv)
PUT_ATTR_TXT("long_name", "Aerosol optical depth 550 nm from SO4")
PUT_ATTR_TXT("cell_methods", "time: mean")
/* float AODSOA(time, ncol) */
dimids[0] = dim_time;
dimids[1] = dim_ncol;
DEF_VAR("AODSOA", REC_XTYPE, 2, dimids, REC_ITYPE, 1)
PUT_ATTR_FILL(fillv)
PUT_ATTR_FLT1("missing_value", missv)
PUT_ATTR_TXT("long_name", "Aerosol optical depth 550 nm from SOA")
PUT_ATTR_TXT("cell_methods", "time: mean")
/* float AODSS(time, ncol) */
dimids[0] = dim_time;
dimids[1] = dim_ncol;
DEF_VAR("AODSS", REC_XTYPE, 2, dimids, REC_ITYPE, 1)
PUT_ATTR_FILL(fillv)
PUT_ATTR_FLT1("missing_value", missv)
PUT_ATTR_TXT("long_name", "Aerosol optical depth 550 nm from seasalt")
PUT_ATTR_TXT("cell_methods", "time: mean")
/* float AODUV(time, ncol) */
dimids[0] = dim_time;
dimids[1] = dim_ncol;
DEF_VAR("AODUV", REC_XTYPE, 2, dimids, REC_ITYPE, 1)
PUT_ATTR_FILL(fillv)
PUT_ATTR_FLT1("missing_value", missv)
PUT_ATTR_TXT("long_name", "Aerosol optical depth 350 nm")
PUT_ATTR_TXT("cell_methods", "time: mean")
/* float AODVIS(time, ncol) */
dimids[0] = dim_time;
dimids[1] = dim_ncol;
DEF_VAR("AODVIS", REC_XTYPE, 2, dimids, REC_ITYPE, 1)
PUT_ATTR_FILL(fillv)
PUT_ATTR_FLT1("missing_value", missv)
PUT_ATTR_TXT("long_name", "Aerosol optical depth 550 nm")
PUT_ATTR_TXT("standard_name", "atmosphere_optical_thickness_due_to_ambient_aerosol_particles")
PUT_ATTR_TXT("cell_methods", "time: mean")
/* float AQRAIN(time, lev, ncol) */
dimids[0] = dim_time;
dimids[1] = dim_lev;
dimids[2] = dim_ncol;
DEF_VAR("AQRAIN", REC_XTYPE, 3, dimids, REC_ITYPE, 2)
PUT_ATTR_INT("mdims", 1, &mdims)
PUT_ATTR_TXT("units", "kg/kg")
PUT_ATTR_TXT("long_name", "Average rain mixing ratio")
PUT_ATTR_TXT("cell_methods", "time: mean")
/* float AQSNOW(time, lev, ncol) */
dimids[0] = dim_time;
dimids[1] = dim_lev;
dimids[2] = dim_ncol;
DEF_VAR("AQSNOW", REC_XTYPE, 3, dimids, REC_ITYPE, 2)
PUT_ATTR_INT("mdims", 1, &mdims)
PUT_ATTR_TXT("units", "kg/kg")
PUT_ATTR_TXT("long_name", "Average snow mixing ratio")
PUT_ATTR_TXT("cell_methods", "time: mean")
/* float AQ_DMS(time, ncol) */
dimids[0] = dim_time;
dimids[1] = dim_ncol;
DEF_VAR("AQ_DMS", REC_XTYPE, 2, dimids, REC_ITYPE, 1)
PUT_ATTR_TXT("units", "kg/m2/s")
PUT_ATTR_TXT("long_name", "DMS aqueous chemistry (for gas species)")
PUT_ATTR_TXT("cell_methods", "time: mean")
/* float AQ_H2O2(time, ncol) */
dimids[0] = dim_time;
dimids[1] = dim_ncol;
DEF_VAR("AQ_H2O2", REC_XTYPE, 2, dimids, REC_ITYPE, 1)
PUT_ATTR_TXT("units", "kg/m2/s")
PUT_ATTR_TXT("long_name", "H2O2 aqueous chemistry (for gas species)")
PUT_ATTR_TXT("cell_methods", "time: mean")
/* float AQ_H2SO4(time, ncol) */
dimids[0] = dim_time;
dimids[1] = dim_ncol;
DEF_VAR("AQ_H2SO4", REC_XTYPE, 2, dimids, REC_ITYPE, 1)
PUT_ATTR_TXT("units", "kg/m2/s")
PUT_ATTR_TXT("long_name", "H2SO4 aqueous chemistry (for gas species)")
PUT_ATTR_TXT("cell_methods", "time: mean")
/* float AQ_O3(time, ncol) */
dimids[0] = dim_time;
dimids[1] = dim_ncol;
DEF_VAR("AQ_O3", REC_XTYPE, 2, dimids, REC_ITYPE, 1)
PUT_ATTR_TXT("units", "kg/m2/s")
PUT_ATTR_TXT("long_name", "O3 aqueous chemistry (for gas species)")
PUT_ATTR_TXT("cell_methods", "time: mean")
/* float AQ_SO2(time, ncol) */
dimids[0] = dim_time;
dimids[1] = dim_ncol;
DEF_VAR("AQ_SO2", REC_XTYPE, 2, dimids, REC_ITYPE, 1)
PUT_ATTR_TXT("units", "kg/m2/s")
PUT_ATTR_TXT("long_name", "SO2 aqueous chemistry (for gas species)")
PUT_ATTR_TXT("cell_methods", "time: mean")
/* float AQ_SOAG(time, ncol) */
dimids[0] = dim_time;
dimids[1] = dim_ncol;
DEF_VAR("AQ_SOAG", REC_XTYPE, 2, dimids, REC_ITYPE, 1)
PUT_ATTR_TXT("units", "kg/m2/s")
PUT_ATTR_TXT("long_name", "SOAG aqueous chemistry (for gas species)")
PUT_ATTR_TXT("cell_methods", "time: mean")
/* float AREI(time, lev, ncol) */
dimids[0] = dim_time;
dimids[1] = dim_lev;
dimids[2] = dim_ncol;
DEF_VAR("AREI", REC_XTYPE, 3, dimids, REC_ITYPE, 2)
PUT_ATTR_INT("mdims", 1, &mdims)
PUT_ATTR_TXT("units", "Micron")
PUT_ATTR_TXT("long_name", "Average ice effective radius")
PUT_ATTR_TXT("cell_methods", "time: mean")
/* float AREL(time, lev, ncol) */
dimids[0] = dim_time;
dimids[1] = dim_lev;
dimids[2] = dim_ncol;
DEF_VAR("AREL", REC_XTYPE, 3, dimids, REC_ITYPE, 2)
PUT_ATTR_INT("mdims", 1, &mdims)
PUT_ATTR_TXT("units", "Micron")
PUT_ATTR_TXT("long_name", "Average droplet effective radius")
PUT_ATTR_TXT("cell_methods", "time: mean")
/* float AWNC(time, lev, ncol) */
dimids[0] = dim_time;
dimids[1] = dim_lev;
dimids[2] = dim_ncol;
DEF_VAR("AWNC", REC_XTYPE, 3, dimids, REC_ITYPE, 2)
PUT_ATTR_INT("mdims", 1, &mdims)
PUT_ATTR_TXT("units", "m-3")
PUT_ATTR_TXT("long_name", "Average cloud water number conc")
PUT_ATTR_TXT("cell_methods", "time: mean")
/* float AWNI(time, lev, ncol) */
dimids[0] = dim_time;
dimids[1] = dim_lev;
dimids[2] = dim_ncol;
DEF_VAR("AWNI", REC_XTYPE, 3, dimids, REC_ITYPE, 2)
PUT_ATTR_INT("mdims", 1, &mdims)
PUT_ATTR_TXT("units", "m-3")
PUT_ATTR_TXT("long_name", "Average cloud ice number conc")
PUT_ATTR_TXT("cell_methods", "time: mean")
/* float BURDEN1(time, ncol) */
dimids[0] = dim_time;
dimids[1] = dim_ncol;
DEF_VAR("BURDEN1", REC_XTYPE, 2, dimids, REC_ITYPE, 1)
PUT_ATTR_FILL(fillv)
PUT_ATTR_FLT1("missing_value", missv)
PUT_ATTR_TXT("units", "kg/m2")
PUT_ATTR_TXT("long_name", "Aerosol burden mode 1")
PUT_ATTR_TXT("cell_methods", "time: mean")
/* float BURDEN2(time, ncol) */
dimids[0] = dim_time;
dimids[1] = dim_ncol;
DEF_VAR("BURDEN2", REC_XTYPE, 2, dimids, REC_ITYPE, 1)
PUT_ATTR_FILL(fillv)
PUT_ATTR_FLT1("missing_value", missv)
PUT_ATTR_TXT("units", "kg/m2")
PUT_ATTR_TXT("long_name", "Aerosol burden mode 2")
PUT_ATTR_TXT("cell_methods", "time: mean")
/* float BURDEN3(time, ncol) */
dimids[0] = dim_time;
dimids[1] = dim_ncol;
DEF_VAR("BURDEN3", REC_XTYPE, 2, dimids, REC_ITYPE, 1)
PUT_ATTR_FILL(fillv)
PUT_ATTR_FLT1("missing_value", missv)
PUT_ATTR_TXT("units", "kg/m2")
PUT_ATTR_TXT("long_name", "Aerosol burden mode 3")
PUT_ATTR_TXT("cell_methods", "time: mean")
/* float BURDEN4(time, ncol) */
dimids[0] = dim_time;
dimids[1] = dim_ncol;
DEF_VAR("BURDEN4", REC_XTYPE, 2, dimids, REC_ITYPE, 1)
PUT_ATTR_FILL(fillv)
PUT_ATTR_FLT1("missing_value", missv)
PUT_ATTR_TXT("units", "kg/m2")
PUT_ATTR_TXT("long_name", "Aerosol burden mode 4")
PUT_ATTR_TXT("cell_methods", "time: mean")
/* float CCN3(time, lev, ncol) */
dimids[0] = dim_time;
dimids[1] = dim_lev;
dimids[2] = dim_ncol;
DEF_VAR("CCN3", REC_XTYPE, 3, dimids, REC_ITYPE, 2)
PUT_ATTR_INT("mdims", 1, &mdims)
PUT_ATTR_TXT("units", "1/cm3")
PUT_ATTR_TXT("long_name", "CCN concentration at S=0.1%")
PUT_ATTR_TXT("cell_methods", "time: mean")
/* float CDNUMC(time, ncol) */
dimids[0] = dim_time;
dimids[1] = dim_ncol;
DEF_VAR("CDNUMC", REC_XTYPE, 2, dimids, REC_ITYPE, 1)
PUT_ATTR_TXT("units", "1/m2")
PUT_ATTR_TXT("long_name", "Vertically-integrated droplet concentration")
PUT_ATTR_TXT("cell_methods", "time: mean")
}
/* float CLDHGH(time, ncol) */
dimids[0] = dim_time;
dimids[1] = dim_ncol;
DEF_VAR("CLDHGH", REC_XTYPE, 2, dimids, REC_ITYPE, 1)
PUT_ATTR_TXT("units", "1")
PUT_ATTR_TXT("long_name", "Vertically-integrated high cloud")
PUT_ATTR_TXT("cell_methods", "time: mean")
if (cfg.hist == h0) {
/* float CLDICE(time, lev, ncol) */
dimids[0] = dim_time;
dimids[1] = dim_lev;
dimids[2] = dim_ncol;
DEF_VAR("CLDICE", REC_XTYPE, 3, dimids, REC_ITYPE, 2)
PUT_ATTR_INT("mdims", 1, &mdims)
PUT_ATTR_TXT("units", "kg/kg")
PUT_ATTR_TXT("mixing_ratio", "wet")
PUT_ATTR_TXT("long_name", "Grid box averaged cloud ice amount")
PUT_ATTR_TXT("cell_methods", "time: mean")
/* float CLDLIQ(time, lev, ncol) */
dimids[0] = dim_time;
dimids[1] = dim_lev;
dimids[2] = dim_ncol;
DEF_VAR("CLDLIQ", REC_XTYPE, 3, dimids, REC_ITYPE, 2)
PUT_ATTR_INT("mdims", 1, &mdims)
PUT_ATTR_TXT("units", "kg/kg")
PUT_ATTR_TXT("mixing_ratio", "wet")
PUT_ATTR_TXT("long_name", "Grid box averaged cloud liquid amount")
PUT_ATTR_TXT("cell_methods", "time: mean")
}
/* float CLDLOW(time, ncol) */
dimids[0] = dim_time;
dimids[1] = dim_ncol;
DEF_VAR("CLDLOW", REC_XTYPE, 2, dimids, REC_ITYPE, 1)
PUT_ATTR_TXT("units", "1")
PUT_ATTR_TXT("long_name", "Vertically-integrated low cloud")
PUT_ATTR_TXT("cell_methods", "time: mean")
/* float CLDMED(time, ncol) */
dimids[0] = dim_time;
dimids[1] = dim_ncol;
DEF_VAR("CLDMED", REC_XTYPE, 2, dimids, REC_ITYPE, 1)
PUT_ATTR_TXT("units", "1")
PUT_ATTR_TXT("long_name", "Vertically-integrated mid-level cloud")
PUT_ATTR_TXT("cell_methods", "time: mean")
if (cfg.hist == h0) {
/* float CLDTOT(time, ncol) */
dimids[0] = dim_time;
dimids[1] = dim_ncol;
DEF_VAR("CLDTOT", REC_XTYPE, 2, dimids, REC_ITYPE, 1)
PUT_ATTR_TXT("units", "1")
PUT_ATTR_TXT("long_name", "Vertically-integrated total cloud")
PUT_ATTR_TXT("cell_methods", "time: mean")
/* float CLOUD(time, lev, ncol) */
dimids[0] = dim_time;
dimids[1] = dim_lev;
dimids[2] = dim_ncol;
DEF_VAR("CLOUD", REC_XTYPE, 3, dimids, REC_ITYPE, 2)
PUT_ATTR_INT("mdims", 1, &mdims)
PUT_ATTR_TXT("units", "1")
PUT_ATTR_TXT("long_name", "Cloud fraction")
PUT_ATTR_TXT("cell_methods", "time: mean")
/* float CLOUDFRAC_CLUBB(time, lev, ncol) */
dimids[0] = dim_time;
dimids[1] = dim_lev;
dimids[2] = dim_ncol;
DEF_VAR("CLOUDFRAC_CLUBB", REC_XTYPE, 3, dimids, REC_ITYPE, 2)
PUT_ATTR_INT("mdims", 1, &mdims)
PUT_ATTR_TXT("units", "1")
PUT_ATTR_TXT("long_name", "Cloud Fraction")
PUT_ATTR_TXT("cell_methods", "time: mean")
/* float CONCLD(time, lev, ncol) */
dimids[0] = dim_time;
dimids[1] = dim_lev;
dimids[2] = dim_ncol;
DEF_VAR("CONCLD", REC_XTYPE, 3, dimids, REC_ITYPE, 2)
PUT_ATTR_INT("mdims", 1, &mdims)
PUT_ATTR_TXT("units", "fraction")
PUT_ATTR_TXT("long_name", "Convective cloud cover")
PUT_ATTR_TXT("cell_methods", "time: mean")
/* float DCQ(time, lev, ncol) */
dimids[0] = dim_time;
dimids[1] = dim_lev;
dimids[2] = dim_ncol;
DEF_VAR("DCQ", REC_XTYPE, 3, dimids, REC_ITYPE, 2)
PUT_ATTR_INT("mdims", 1, &mdims)
PUT_ATTR_TXT("units", "kg/kg/s")
PUT_ATTR_TXT("long_name", "Q tendency due to moist processes")
PUT_ATTR_TXT("cell_methods", "time: mean")
/* float DF_DMS(time, ncol) */
dimids[0] = dim_time;
dimids[1] = dim_ncol;
DEF_VAR("DF_DMS", REC_XTYPE, 2, dimids, REC_ITYPE, 1)
PUT_ATTR_TXT("units", "kg/m2/s")
PUT_ATTR_TXT("long_name", "dry deposition flux")
PUT_ATTR_TXT("cell_methods", "time: mean")
/* float DF_H2O2(time, ncol) */
dimids[0] = dim_time;
dimids[1] = dim_ncol;
DEF_VAR("DF_H2O2", REC_XTYPE, 2, dimids, REC_ITYPE, 1)
PUT_ATTR_TXT("units", "kg/m2/s")
PUT_ATTR_TXT("long_name", "dry deposition flux")
PUT_ATTR_TXT("cell_methods", "time: mean")
/* float DF_H2SO4(time, ncol) */
dimids[0] = dim_time;
dimids[1] = dim_ncol;
DEF_VAR("DF_H2SO4", REC_XTYPE, 2, dimids, REC_ITYPE, 1)
PUT_ATTR_TXT("units", "kg/m2/s")
PUT_ATTR_TXT("long_name", "dry deposition flux")
PUT_ATTR_TXT("cell_methods", "time: mean")
/* float DF_O3(time, ncol) */
dimids[0] = dim_time;
dimids[1] = dim_ncol;
DEF_VAR("DF_O3", REC_XTYPE, 2, dimids, REC_ITYPE, 1)
PUT_ATTR_TXT("units", "kg/m2/s")
PUT_ATTR_TXT("long_name", "dry deposition flux")
PUT_ATTR_TXT("cell_methods", "time: mean")
/* float DF_SO2(time, ncol) */
dimids[0] = dim_time;
dimids[1] = dim_ncol;
DEF_VAR("DF_SO2", REC_XTYPE, 2, dimids, REC_ITYPE, 1)
PUT_ATTR_TXT("units", "kg/m2/s")
PUT_ATTR_TXT("long_name", "dry deposition flux")
PUT_ATTR_TXT("cell_methods", "time: mean")
/* float DF_SOAG(time, ncol) */
dimids[0] = dim_time;
dimids[1] = dim_ncol;
DEF_VAR("DF_SOAG", REC_XTYPE, 2, dimids, REC_ITYPE, 1)
PUT_ATTR_TXT("units", "kg/m2/s")
PUT_ATTR_TXT("long_name", "dry deposition flux")
PUT_ATTR_TXT("cell_methods", "time: mean")
/* float DMS_SRF(time, ncol) */
dimids[0] = dim_time;
dimids[1] = dim_ncol;
DEF_VAR("DMS_SRF", REC_XTYPE, 2, dimids, REC_ITYPE, 1)