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22 Open 61 Closed
22 Open 61 Closed
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Issues list

Error in seqExport(genofile, gdsfile_filtered) : Not implemented in 'genotype/extra.index', please contact the author.
#97 opened Sep 14, 2024 by maitree-patel
Flipped $ref and $alt when converting plink binary files to gds format
#96 opened Sep 9, 2024 by ryshi06
2
The +1 problem - adding new samples incrementally
#95 opened Aug 24, 2024 by boboppie
@zhengxwen
seqMerge error - File 2: chromosomes and positions are unsorted. bug
#93 opened Jun 4, 2024 by boboppie
@zhengxwen
2
Error in seqVCF2GDS(vcf.fn, "chr1.gds", storage.option = "LZMA_RA", parallel = FALSE) : std::bad_alloc
#92 opened May 23, 2024 by LiuYuMeng987654
@zhengxwen
1
SeqArray-1.42.3 build fails with R-4.3.3 and GCC 13.2.0 question
#89 opened Apr 2, 2024 by fizwit
@zhengxwen
4
The package does not install with the LLVM 17 compilers
#88 opened Mar 18, 2024 by lhe17
@zhengxwen
1
Sample.idError with seqVCF2GDS bug
#87 opened Nov 6, 2023 by alexisregelson
@zhengxwen
3
how to give ploidy a non missing value in a dosage data set
#86 opened Oct 9, 2023 by nickychapman
3
Invalid variant dimension in 'genotype/data' and Ploidy=1 with more than 2 alleles per variant
#85 opened Mar 22, 2023 by gtollefson
8
How to save converted file
#82 opened Aug 31, 2022 by manburst
2
error when running seqVCF2GDS
#81 opened Aug 19, 2022 by maxineliu
1
Error in seqVCF2GDS(vcf.files, gds.file, verbose = FALSE)
#76 opened May 10, 2022 by Bulouere
1
Installation problems
#75 opened Apr 27, 2022 by laiajulianamu
2
Problem in SeqArray::seqVCF2GDS - Parsing the vcf header fails
#74 opened Apr 15, 2022 by iaia87
2
Estimating IBD using MLE bug
#73 opened Sep 3, 2021 by BELKHIR
3
Create GDS file from imputed data using dosage || No variable 'annotation/format/DS' in the FORMAT field.
#71 opened Aug 4, 2021 by complexgenome
2
seqGDS2VCF error after using seqMerge bug
#68 opened Jan 20, 2021 by gustavahlberg
@zhengxwen
8
seqParallel with BiocParallel::BatchtoolsParam object ? bug
#66 opened Nov 14, 2020 by ldcato
@zhengxwen
2
Suggestion: seqVCF2GDS could use index file to get total number of variants feature required
#53 opened Jul 1, 2019 by jemunro
@zhengxwen
Error message: overlapping on both samples and variants
#43 opened Feb 12, 2019 by annaquaglieri16
seqGDS2SNP() altering genotype values for haploid data
#42 opened Jan 30, 2019 by AAvalos82
1
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