Integrative genomics reveals the polygenic basis of seedless in grapevine (Vitis vinifera L.)
Seedlessness is a crucial quality trait in table grape breeding. However, the development of seeds involved intricate regulations and the polygenic basis of seed abortion remains unclear. Our study combine comparative genomics, population genetics, quantitative genetics and intagretive genomics to unravel the evolution and polygenic basis of seedlessness in grapes...
Keywords: Viticulture, Seed abortion, T2T genome, Structural variations, GWAS, Genomic selection
The raw sequencing data, comprising PacBio HiFi long-reads, Illumina Hi-C reads, RNA-seq reads, and 29 WGS grape accessions, is accessible on NCBI under BioProject ID: PRJNA1021353 and on the National Genomics Data Center (NGDC) under BioProject ID: PRJCA022010.
The genome assembly and their annotations have been deposited into in Zenodo: https://doi.org/10.5281/zenodo.8278185, and NCBI BioSample accessions: SAMN37625511 and SAMN37625512.
Wang, Xu, et al. "Integrative genomics reveals the polygenic basis of seedlessness in grapevine" Current Biology (2024). doi: https://doi.org/10.1016/j.cub.2024.07.022
If you have any questions, please do not hesitate to contact us.
Yongfeng Zhou: [email protected], or Xu Wang: [email protected]