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zhouzilu committed Oct 28, 2019
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2 changes: 1 addition & 1 deletion vignette/DENDROplan_vignette.Rmd
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**Figure 3**. Example tree structure DENDRO can simulate with corresponding parameters.

Numbers on branches illustrate index of mutation probability variable `lprob`, and numbers at node illustrate index of cell proportion variable `kprob`. The interested clade is labeled by a *star*. Capture rate and purity are measured on that specific *star* cluster. `k` is the parameter indicating number of subclones. When `k=4`, the subclones can for two typeof trees, differetiated by the `subtype` parameter.
Numbers on branches illustrate index of mutation probability variable `lprob`, and numbers at node illustrate index of cell proportion variable `kprob`. The interested clade is labeled by a *star*. Capture rate and purity are measured on that specific *star* cluster. `k` is the parameter indicating number of subclones. When `k=4`, the subclones can form two types of trees, differetiated by the `subtype` parameter.

### 3.3.2 Accuracy measurements

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24 changes: 12 additions & 12 deletions vignette/DENDROplan_vignette.html

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