The upper dimensional limit of X, N, Z matrix

[by-young]

Hi Zilu,
when I run the DENDRO for building a parsimony tree about the dataset of liver cancer, the step of distance calculation step of DENDRO（demo_qc$dist = DENDRO.dist(demo_qc$X,demo_qc$N,demo_qc$Z,show.progress=FALSE)）has run about 3 days and is still running. The dimension of the filtered matrix X, N, Z after doing FilterCellMutation step is 2705*4533(2705 mutation sites and 4533 cells). So I would like to know The upper dimensional limit of X, N, Z matrix, and whether my dataset can run out and produce the rusult.

I am looking forward your reply.
best wishes.

[zhouzilu]

Hey, sorry again for the delay. I lost my school email for a little while after graduation. Your number should work fine... Did you happen to have the result or give up on dendro.

[by-young]

I was confused by the phenomenon. when I ran the script on the cluster based server, it could not have the result and continued running. But when I ran the script on the Rstudio on local computer, it could run out but was still time-cosuming. Do you know the reason?