.bash_history

sudo apt update
sudo apt upgrade
sudo apt update
sudo apt upgrade
inxi -Fxxxrz && rfkill list && iwconfig && mokutil --sb-state 
sudo apt update && sudo apt upgrade
sudo apt update --fix-missing
sudo apt -f install
lshw -C network 
sudo apt install rtl8812au-dkms 
sudo apt update
sudo apt upgrade
sudo apt update
sudo apt upgrade
sudo apt -f install
sudo apt update
sudo apt install rtl8812au-dkms 
sudo ./dkms-install.sh 
sudo apt update
sudo apt upgrade
lshw -C network 
sudo apt remove rtl8812au-dkms
sudo apt autoremove
sudo apt install bc module-assistant build-essential dkms
sudo m-a prepare
sudo apt install ubuntu-mate-desktop ubuntu-mate-core ubuntu-mate-
sudo apt install ubuntu-mate-desktop ubuntu-mate-core
sudo apt install vlc ubuntu-restricted-extras 
sudo apt install chromium-browser
sudo apt install okular kdenlive
sudo apt install i3
sudo apt install dconf-editor 
sudo apt remove magnus 
exit
ifconfig
wzit
exit
sudo shutdown -h now
sudo apt install openssh-server
sudo apt update
sudo apt upgrade
sudo apt find latex
apt find latex
apt search latex
sudo apt install texlive-latex-base texlive-latex-extra texlive-latex-recommended
exit
cp -r -p C6W/ ~/
exit
cp -r -p C6W/ ~/
exit
cd ~/
du -hcs C6W/
exit
sudo dpkg -i opera-stable_84.0.4316.42_amd64.deb 
exit
sudo dpkg -i nautilus-megasync-xUbuntu_21.10_amd64.deb 
sudo apt -f install
exit
sudo dpkg -i nautilus-megasync-xUbuntu_21.10_amd64.deb 
cd Downloads/
sudo dpkg -i nautilus-megasync-xUbuntu_21.10_amd64.deb 
sudo apt -f install
exit
sudo apt upgrade
exit
sudo apt install git
exit
apt find latex
apt search latex
apt search texlive

sudo apt install texlive
sudo apt install texlive-extra-utils 
sudo apt install texlive-latex-extra
sudo apt install texlive-latex-base
sudo apt install texlive-latex-recommended
sudo apt install texlive-bibtex-extra 
exit
sudo apt install virtualbox virtualbox-guest-additions-iso 
sudo apt install htop
sudo apt autoremove
htop
sudo apt install emacs
sudo apt install python python-dev build-essential curl virtualenv python-pip pylint ruby silversearcher-ag sqlformat
sudo apt install python python3-dev build-essential curl virtualenv python-pip pylint ruby silversearcher-ag sqlformat
sudo apt install python3 python3-dev build-essential curl virtualenv python-pip pylint ruby silversearcher-ag sqlformat
sudo apt install python3 python3-dev build-essential curl virtualenv python3-pip pylint ruby silversearcher-ag sqlformat
sudo add-apt-repository ppa:ubuntu-elisp/ppa
sudo apt update
htop
sudo apt update
sudo apt install opera
sudo apt install opera-stable 
sudo apt install tilda 
emacs
sudo apt update
sudo apt upgrade
sudo apt install emacs
apt search emacs
sudo apt install emacs
sudo apt install texlive-full 
exit
cd C6W/
chown -R timol .
l
cd ../
l
cd ..
cp dotfiles/bashrc ./.bashrc
exit
sudo apt install inkscape
exit
l
chown -R timol C6W/
l
chmod -R timol C6W/
exit
l
chown -r timol .
chown -R timol .
l
exit
l
chown --reference=work/ C6W/
ks
l
sudo chown --reference=work/ C6W/
l
chmod --reference=work/ C6W/
l
l C6W/
cd ../
chmod -r --reference=work/ C6W/
chmod -R --reference=work/ C6W/
cd ../
chmod -R --reference=work/ C6W/
ll
l
cd /home/timol/
chmod -R --reference=work/ C6W/
l
cd C6W/
l
cd ../
mkdir tmp
exit
caja .
git status
git add .
cd ../
git status
git add .
git commit -m "updated draft "
git config user.enmail "ztimol@gmail.com"
git config user.email "ztimol@gmail.com"
git config user.name "Zaheer"
git commit -m "updated draft "
git push origin draft
git status
exit
python3 -m env venv
python3 -m benv venv
python3 -m venv venv
sudo apt install python3.10-venv
python3 -m venv venv
source venv/bin/activate
pip install matplotlib scipy numpy mdanalysis
cd C6W/Studies/structure_analysis/
cd images/
python3 scatter_plot_heat_map.py 
exit
git status
cd ../
git status
caja .
caja --no-desktop .
sudo apt update
sudo apt upgrade
exit
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf main.pdf```
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf main.pdf
exit
git status
git add .
git commit -m "updated draft "
cd ~/
ssh-keygen
ssh-add ~/.ssh/id_rsa
git push origin draft
cd C6W/Writeup/latex/
git push origin draft
git status
git add .
git commit -m "updated draft "
git push origin draft
exit
source ~/.venv/bin/activate
python3 line_plot.py 
pip3 install matplotlib
python3 line_plot.py 
pip3 install scipy numpy
python3 line_plot.py 
(venv) timol@CoreBook-X:~/C6W/Studies/structure_analysis/images$ 
python3 line_plot.py 
exit
sudo apt update 
sudo apt install pdfarranger 
sudo apt install network-manager-openconnect-gnome
ip link ls
exit
ip link ls
sudo apt install openconnect 
sudo apt remove
sudo apt autoremove
apt search openconnect
sudo apt install network-manager-openvpn-gnome 
sudo apt install network-manager-openconnect-gnome 
exit
sudo apt update && sudo apt upgrade
sudo apt upgrade
sudo systemctl restart NetworkManager
exit
caja --no-desktop .
sudo apt update 
sudo apt upgrade
sudo apt update 
sudo apt upgrade
sudo apt update
sudo apt upgrade
source venv38/bin/activate
l
cd src/
python3 main.py 
pip3 install pandas
deactivate
source ../venv38/bin/activate
pip3 install pandas
pip install pandas
pip3 install pandas
deacivate
deactivate
cd ../
pyhon3 -m venv venv
python3 -m venv venv
source venv/bin/activate
pip install -r requirements.txt 
exitr
exit
sudo apt update
sudo apt upgrade
l
sudo chown -R timol .
l
exit
docker ps
docker run ubuntu:20.04
docker images
docker run ubuntu:20.04
docker ps
docker 
docker ps
cd work/esp/sapp_transmission_study/sapp_transmission_pricing_app/app/
l
rm -r venv
docker run -v ./:/home/app ubuntu:20.04 /bin/bash
docker run -v ./=/home/app ubuntu:20.04 /bin/bash
docker ps
l
docker ps -a
docker rm 293840a0c4f8 bfb96d7cb234
docker run -d -v ./=/home/app ubuntu:20.04 bash
docker ps
docker ps -a
docker rm f66c28185c3f
docker run -d -v .:/home/app ubuntu:20.04 bash
docker run -d -v ./:/home/app ubuntu:20.04 bash
docker run -d -v "./":"/home/app/" ubuntu:20.04 bash
docker run -d -v ../:/home/app/ ubuntu:20.04 bash
docker run -d -v /home/timol/work/esp/sapp_transmission_study/sapp_transmission_pricing_app/app:/home/app/ ubuntu:20.04 /bin/bash
docker ps
docker ps -a
docker rm df5391efb577
docker ps -a
l
docker run -d -v /home/timol/work/esp/sapp_transmission_study/sapp_transmission_pricing_app/app:/home/app/ ubuntu:20.04 bash
docker ps
docker ps -a
docker rm 533
docker run -d -v /home/timol/work/esp/sapp_transmission_study/sapp_transmission_pricing_app/app:/home/app/ -it ubuntu:20.04
docker ps
docker exec -it 0e59 bash
exit
docker ps
sudo apt install docker.io
docker compose
docker -vcompose
docker -compose
sudo apt install docker-compose
sudo apt install autoremove
sudo apt autoremove
sudo groupadd docker
sudo gpasswd -a $USER docker
newgrp docker
exit
source venv/bin/activate
pip install -r requirements.txt 
python -m pip install --upgrade pip
pip install -r requirements.txt 
git status
exit
docker ps
docker ps -a
docker start0e591bbfa216
docker start 0e591bbfa216
cd Downloads/
l
sudo dpkg -i teams_1.4.00.26453_amd64.deb 
sudo apt -f install
eit
exit
docker ps
docker exec -it 0e591bbfa216 bash
exit
docker ps -a
docker start 0e591bbfa216
docker exec -it 0e591bbfa216 bash
exit
git status
docker exec -it 0e591bbfa216 bash
exit
sudo apt update
reset
sudo apt update
sudo apt upgraade
sudo apt upgrade
docker ps
docker ps -a
docker exec -it 0e591bbfa216 bash
docker start 0e591bbfa216
exit
docker exec -it 0e591bbfa216
docker exec -it 0e591bbfa216 bash
exit
docker ps
docker exec -it 0e591bbfa216 bash
exit
cd Downloads/
l
sudo dpkg -i microsoft-edge-stable_99.0.1150.55-1_amd64.deb 
rm -r microsoft-edge-stable_99.0.1150.*
htop
docker ps
docker exec -it 0e591bbfa216 bash
exit
git status
git add calculators/ 
git diff controllers/
git checkout controllers/scenario_controller.py 
git status
git diff data_managers/
git add data_managers/
git status
git diff validators/
git add validators/
git commit -m "adding dc"
git config user.email "ztimol@gmail.com"
git config user.name "Zaheer"
git status
git commit -m "adding dc"
git push origin feature/dc
exit
sudo apt update
sudo apt upgradw
sudo apt upgrade
sudo apt autoremove
sudo apt update
sudo apt upgrade
htop
docker ps
sudo chown -r timol .
sudo chown -R timol .
exit
sudo chown -R timol .
exit
htop
exit
sudo dpkg -i nautilus-megasync-xUbuntu_21.10_amd64.deb 
sudo apt -f install
sudo chown -R timol .
exit
docker ps -a
docekr start 0e591bbfa216
docker start 0e591bbfa216
docker exec -it 0e591bbfa216 bash
htop
vboxmanage setextradata "Windows 10" GUI/ScaleFactor 1.15
vboxmanage setextradata "Windows 10" GUI/ScaleFactor 1.20
exit
cd Downloads/
sudo dpkg -i megasync-xUbuntu_21.10_amd64.deb 
sudo apt -f install
sudo dpkg -i nautilus-megasync-xUbuntu_21.10_amd64.deb 
sudo apt update
sudo apt upgrade
caja --no-desktop .
exit
docker exec -it 0e591bbfa216 bash
exit
git tsatus
git status
git add calculators/bialek_calculator.py 
git add config/settings.py 
git add data_managers/
git commit -m "adding dc calc"
git push origin dev
git push origin feature/dc
git status
git add calculators/marginal_participation_calculator.py calculators/bialek_calculator.py 
git commit -m "adding dc calc"
git push origin dev
git checkout -b feature/dc_cost
git push origin feature/dc_cost
exit
git status
git add ../
git commit -m "updated draft"
git push origin draft
git status
git add ../
git commit -m "updated draft"
git push origin draft
exit
sudo apt update
sudo apt upgrade
sudo apt update
sudo apt upgrade
sudo apt update
sudo apt upgrade
sudo apt install anyconnet
sudo apt install anyconnect
sudo apt install openconnect 
sudo apt install openconnect
sudo apt install any
chmod +x restart_wifi.sh 
./restart_wifi.sh 
sudo rmmod rtw88_8821ce && sudo modprobe rtw88_8822ce 
sudo rmmod rtw88_8821ce && sudo modprobe rtw88_8822c
sudo rmmod rtw88_8821ce && sudo modprobe rtw88_8822ce
sudo modprobe rtw88_8822ce
sudo rmmod rtw88_8821ce && sudo modprobe rtw88_8822ce
sudo service NetworkManager stop
sudo service NetworkManager start
nmcli nm sleep false
lshw -C network 
exit
sudo apt update && sudo apt upgrade
sudo apt upgrade
exit
./configure 
make install
cd src/
make install
sudo amek install
sudo make install
exit
md
vmd
exit
htop
htop
git status
git add .
git commit -m "updated draft"
git push origin draft
git status
git add ../
git status
git commit -m "updated draft"
git push origin draft
exit
source ~/.venv/bin/activate
python3 base.py -f config_files/bDGlc13_aDGlc14_bDGlcNAc.conf 
l
pip install -r requirements.txt 
python3 base.py -f config_files/bDGlc13_aDGlc14_bDGlcNAc.conf 
python3 base.py -f config_files/bDGlc13_aDGlc14_bDGlcNAc_glycam.conf 
python3 base.py -f config_files/aDGlc13_bDGlc14_bDGlcNAc_glycam.conf 
python3 base.py -f config_files/aDGlc13_bDGlc14_bDGlcNAc.conf 
python3 base.py -f config_files/bDGlc13_bDGlc14_bDGlcNAc.conf 
python3 base.py -f config_files/bDGlc13_bDGlc14_bDGlcNAc_glycam.conf
cd custom_scripts/
python3 blockAveragingAnalysis_MK.py 
exit
htop[
htop
vmd -psf bDGlc13_bDGlc14_bDGlcNAc.psf -pdb bDGlc13_bDGlc14_bDGlcNAc.pdb 
vmd -psf bDGlc13_bDGlc14_bDGlcNAc.psf -dcd bDGlc13_bDGlc14_bDGlcNAc_0-2000ns.dcd 
exit
teams
exit
ping google.com
exit
sudo apt install heif-gdk-pixbuf
sudo apt install heif-thumbnailer
exit
git status
git add .
git commit -m "updated draft"
git push origin dev
git push origin draft
git status
git add .
git commit -m "updated draft"
git push origin draft
exit
sudo apt update
sudo apt upgrade
sudo apt install xmgrace
sudo apt install grace 
sudo apt update
ping google.com
caja .
exit
source ~/.venv/bin/activate
cd images/
python3 cp_torsion_heat_map_plot.py 
python3 scatter_plot_heat_map.py 
exit
wget https://s3.us-west-2.amazonaws.com/secure.notion-static.com/186d2481-a498-44b1-9a71-023ee362add8/Elaine_N._Marieb_Katja_Hoehn_-_Human_Anatomy_and_Physiology_%280%29_-_libgen.lc.pdf?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Content-Sha256=UNSIGNED-PAYLOAD&X-Amz-Credential=AKIAT73L2G45EIPT3X45%2F20220404%2Fus-west-2%2Fs3%2Faws4_request&X-Amz-Date=20220404T160208Z&X-Amz-Expires=86400&X-Amz-Signature=e0ce63af0ca1315209dbe1217e57bb8ec56bad7b42f9b6a4eb794d328b671784&X-Amz-SignedHeaders=host&response-content-disposition=filename%20%3D%22Elaine%2520N.%2520Marieb%252C%2520Katja%2520Hoehn%2520-%2520Human%2520Anatomy%2520and%2520Physiology%2520%280%29%2520-%2520libgen.lc.pdf%22&x-id=GetObject
curl 'https://s3.us-west-2.amazonaws.com/secure.notion-static.com/186d2481-a498-44b1-9a71-023ee362add8/Elaine_N._Marieb_Katja_Hoehn_-_Human_Anatomy_and_Physiology_%280%29_-_libgen.lc.pdf?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Content-Sha256=UNSIGNED-PAYLOAD&X-Amz-Credential=AKIAT73L2G45EIPT3X45%2F20220404%2Fus-west-2%2Fs3%2Faws4_request&X-Amz-Date=20220404T160316Z&X-Amz-Expires=86400&X-Amz-Signature=b8be5a7c206557872e305da9af51da707a7719e408b4a00b9aab9f9c63c49eaa&X-Amz-SignedHeaders=host&response-content-disposition=filename%20%3D%22Elaine%2520N.%2520Marieb%252C%2520Katja%2520Hoehn%2520-%2520Human%2520Anatomy%2520and%2520Physiology%2520%280%29%2520-%2520libgen.lc.pdf%22&x-id=GetObject' -H 'User-Agent: Mozilla/5.0 (X11; Linux x86_64; rv:98.0) Gecko/20100101 Firefox/98.0' -H 'Accept: text/html,application/xhtml+xml,application/xml;q=0.9,image/avif,image/webp,*/*;q=0.8' -H 'Accept-Language: en-US,en;q=0.5' -H 'Accept-Encoding: gzip, deflate, br' -H 'DNT: 1' -H 'Connection: keep-alive' -H 'Upgrade-Insecure-Requests: 1' -H 'Sec-Fetch-Dest: document' -H 'Sec-Fetch-Mode: navigate' -H 'Sec-Fetch-Site: none' -H 'Sec-Fetch-User: ?1'
curl 'https://s3.us-west-2.amazonaws.com/secure.notion-static.com/186d2481-a498-44b1-9a71-023ee362add8/Elaine_N._Marieb_Katja_Hoehn_-_Human_Anatomy_and_Physiology_%280%29_-_libgen.lc.pdf?X-Amz-Algorithm=AWS4-HMAC-SHA256&X-Amz-Content-Sha256=UNSIGNED-PAYLOAD&X-Amz-Credential=AKIAT73L2G45EIPT3X45%2F20220404%2Fus-west-2%2Fs3%2Faws4_request&X-Amz-Date=20220404T160316Z&X-Amz-Expires=86400&X-Amz-Signature=b8be5a7c206557872e305da9af51da707a7719e408b4a00b9aab9f9c63c49eaa&X-Amz-SignedHeaders=host&response-content-disposition=filename%20%3D%22Elaine%2520N.%2520Marieb%252C%2520Katja%2520Hoehn%2520-%2520Human%2520Anatomy%2520and%2520Physiology%2520%280%29%2520-%2520libgen.lc.pdf%22&x-id=GetObject' -H 'User-Agent: Mozilla/5.0 (X11; Linux x86_64; rv:98.0) Gecko/20100101 Firefox/98.0' -H 'Accept: text/html,application/xhtml+xml,application/xml;q=0.9,image/avif,image/webp,*/*;q=0.8' -H 'Accept-Language: en-US,en;q=0.5' -H 'Accept-Encoding: gzip, deflate, br' -H 'DNT: 1' -H 'Connection: keep-alive' -H 'Upgrade-Insecure-Requests: 1' -H 'Sec-Fetch-Dest: document' -H 'Sec-Fetch-Mode: navigate' -H 'Sec-Fetch-Site: none' -H 'Sec-Fetch-User: ?1' --output x.pdf
exit
source ~/.venv/bin/activate
cd images/
python3 scatter_plot_heat_map.py 
exit
sudo apt update
sudo apt upgrade
sudo apt remove teams 
sudo apt autoremove
snap install teams
sudo apt update
sudo apt upgrade
sudo apt autoremove
git status
cd ..
git status
git add .
git commit -m "updated draft"
git push origin draft
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf main.pdf
gs --verbose -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf main.pdf
gs -v -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf main.pdf
exit
htop
exit
git status
git add .
git commit -m "updated draft"
git push origin draft
gs -v -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf main.pdf
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf main.pdf
htop
exit
sudo apt update
sudo apt upgrade
exit
ssh-add ~/.ssh/id_rsa
ssh ztimol@hpc.uct.ac.za
cd C6W/Studies/Dynamics/NAMD_plumed/MD/solution/PMF/pucker/bDGlc13_aDGlc14_bDGlcNAc/trajectories/
l
scp -r ztimol@hpc.uct.ac.za:/scratch/ztimol/Studies/Dynamics/NAMD_glycam_plumed/PMF/solution/pucker/bDGlc13_aDGlc14_bDGlcNAc/simulations/bDGlc13_aDGlc14_bDGlcNAc_r1/run_output/metaD_sol_out_plumed.pmf .
l
exit
htop
exit
exit
source ~/.venv/bin/activate
python3 pmf_multi_plumed.py 
pwd
~/C6W/Studies/Dynamics/NAMD_plumed/MD/solution/PMF/pucker/aDGlc13_aDGlc14_bDGlc/Analysis/ring_pucker/
cds ~/C6W/Studies/Dynamics/NAMD_plumed/MD/solution/PMF/pucker/aDGlc13_aDGlc14_bDGlc/Analysis/ring_pucker/
cd ~/C6W/Studies/Dynamics/NAMD_plumed/MD/solution/PMF/pucker/aDGlc13_aDGlc14_bDGlc/Analysis/ring_pucker/
cd tmp
cd ~/tmp
python3
exit
sudo apt update
sudo apt upgrade
sudo apt-get install mpack
cd Downloads/
munpack -t ATP\ Scan\ In\ Progress.eml 
firefox
sudo apt update
sudo apt upgrade
snap update
snap refresh
snap refresh --time
env BAMF_DESKTOP_FILE_HINT=/var/lib/snapd/desktop/applications/firefox_firefox.desktop /snap/bin/firefox %u
exit
docker ps
docker ps -a
docker exec -it 0e591bbfa216 bash
chown -R timol .
sudo chown -R timol .
exit
snap install anydesk
anydesk
sudo apt install libpangox-1.0-0
sudo apt install libpangoxft-1.0-0 
sudo apt autoremove
anydesk
cd Downloads/
sudo dpkg -i libpangox-1.0-0_0.0.2-5.1_amd64.deb 
anydesk
sudo chown -r timol .
sudo chown -R timol .
exit
sudo chown -R timol .
exit
sudo apt update
sudo apt upgrade
sudo apt update
sudo apt upgrade
sudo apt update
sudo apt upgrade
sudo apt update
cd Downloads/
sudo dpkg -i anydesk_6.1.1-1_amd64.deb 
sudo apt -f install
cd ../
exit
sudo chown -R timol .
exit
sudo chown -R timol .
git status
git add ../
git status
git commit -m "updated draft"
git push origin draft
exit
source ~/.venv/bin/activate
python3 calc_energies.py 
python3 energies_from_pmf.py 
python3 pucker_and_torsion.py 
x
python3 pucker_and_torsion.py 
python3 energies_from_pmf.py 
exit
htip
htop
exit
htop
exit
docker ps -a
docker ps -a 0e591bbfa216
docker start 0e591bbfa216
docker exec -it 0e591bbfa216 bash
docker ps
docker restart 0e59
docker exec -it 0e591bbfa216 bash
exit
git status
git diff calculators/ptdf_calculator.py
git checkout calculators/ptdf_calculator.py
git status
git diff controllers/scenario_controller.py 
git status
git diff main.py 
git status
git diff analysis.py 
git status
git diff get_psse_scenarios_data.py
git checkout get_psse_scenarios_data.py
git status
git diff get_psse_scenarios_data.py
git add get_psse_scenarios_data.py
git commit -m "temp disable impedance check"
git status
git diff psse_middleware/psse_middleware.py
git add psse_middleware/psse_middleware.py
git commit -m "only changing branch resistance"
git status
git diff controllers/study_controller.py
git checkout controllers/study_controller.py
git status
git diff controllers/study_controller.py
git status
git diff controllers/scenario_controller.py
git checkout controllers/scenario_controller.py
git status
git push origin dev
git status
git branch
git status
git add calculators/
git commit -m "updating cost calc"
git push origin draft
git push origin dev
git status
git diff data_managers/scenario_data_manager.py
git add data_managers/scenario_data_manager.py
git commit -m "fix to reading in branch data"
git status
git diff validators/
git status
git add validators/
git commit -m "added one way check of psse data in cost db"
git push origin dev
git status
git push origin feature/dc_cost
git status
cd ../
l
python3 -m venv venv
source venv/bin/activate
pip install -r requirements.txt 
source venv38/bin/activate
pip install -r requirements.txt 
pip3 install -r requirements.txt 
deactivate
source venv38/bin/activate
pip3 install -r requirements.txt 
deactivate
exit
sudo apt update
sudo apt upgrade
sudo apt update
snap install sublime-text 
snap install sublime-text --classic
sudo apt upgrade
sudo chown -R timol .
exit
sudo chown -R timol .
exiot
exit
docker ps
docker ps -a
docker start 0e591bbfa216
docker exec -it 0e591bbfa216 bash
exit
git status
pwd
exit
sudo chown -R timol .
docker ps
docker ps -a
docker start 0e59
docker ps
docker exec -it 0e591bbfa216 bash
exit
git status
git add ../calculators/bialek_calculator.py 
git commit -m "fix to dc"
git push origin feature/dc_cost
git status
git ../calculators/
git commit -m "updated costs"
git add ../calculators/
git commit -m "updated dc calc and costs"
git push origin dev
git push origin feature/dc_cost
exit
sudo apt update
htop
sudo apt upgrade
sudo apt autremove
sudo apt autoremove
caja .
exit
mkvmerge -o "HUB1022F - Gases - Video 2" "Screen_Recording_20220412-205332_Samsung Notes.mp4" +"Screen_Recording_20220413-202904_Samsung Notes.mp4" +"Screen_Recording_20220413-205735_Samsung Notes.mp4"
mkvmerge -o "HUB1022F - Gases - Video 2" "Screen_Recording_20220412-205332_Samsung Notes.mp4" --append-to "Screen_Recording_20220413-202904_Samsung Notes.mp4" --append "Screen_Recording_20220413-205735_Samsung Notes.mp4"
mkvmerge --help
mkvmerge -o "HUB1022F - Gases - Video 2" "Screen_Recording_20220412-205332_Samsung Notes.mp4" +"Screen_Recording_20220413-202904_Samsung Notes.mp4" +"Screen_Recording_20220413-205735_Samsung Notes.mp4"
exit
mkvmerge -o "HUB1022F - Gases - Video 3.mkv" +"Screen_Recording_20220414-205258_Samsung Notes.mp4" +"[200~Screen_Recording_20220414-205811_Samsung Notes.mp4" +
mkvmerge -o "HUB1022F - Gases - Video 3.mkv" +"Screen_Recording_20220414-205258_Samsung Notes.mp4" +"[200~Screen_Recording_20220414-205811_Samsung Notes.mp4" +"Screen_Recording_20220416-205836_Samsung Notes.mp4" +"Screen_Recording_20220418-202545_Samsung Notes.mp4"
mkvmerge -o "HUB1022F - Gases - Video 3.mkv" +"Screen_Recording_20220414-205258_Samsung Notes.mp4" +"200~Screen_Recording_20220414-205811_Samsung Notes.mp4" +"Screen_Recording_20220416-205836_Samsung Notes.mp4" +"Screen_Recording_20220418-202545_Samsung Notes.mp4"
mkvmerge -o "HUB1022F - Gases - Video 3.mkv" "Screen_Recording_20220414-205258_Samsung Notes.mp4" +"200~Screen_Recording_20220414-205811_Samsung Notes.mp4" +"Screen_Recording_20220416-205836_Samsung Notes.mp4" +"Screen_Recording_20220418-202545_Samsung Notes.mp4"
mkvmerge -o "HUB1022F - Gases - Video 3.mkv" "Screen_Recording_20220414-205258_Samsung Notes.mp4" +"Screen_Recording_20220414-205811_Samsung Notes.mp4" +"Screen_Recording_20220416-205836_Samsung Notes.mp4" +"Screen_Recording_20220418-202545_Samsung Notes.mp4"
source ~/.venv/bin/activate
python3 energies_from_pmf.py 
exit
git status
git add ../
git commit -m "updated draft"
git push origin draft
exit
gnome-screensaver-command -l
sudo apt update
sudo apt upgrade
sudo apt install mkvtoolnix
sudo apt update
sudo apt upgrade
sudo apt updatesudo apt update
sudo apt update
sudo apt upgrade
sudo chown -R timol .
exit
cd /home/timol/work/esp/sapp_transmission_study/sapp_transmission_pricing_app/app
source venv/bin/activate
pip install -r requirements.txt 
sudo apt install python3-dev
pip install -r requirements.txt 
pip uninstall numpy
pip uninstall pandas
reset
ls
deactivate
rm -r venv/
mv venv.old/ venv
exit
htop
exi
exit
sudo chown -R timol .
docker ps
docker start 0e59
docker exec -it 0e591bbfa216 bash
exit
git status
cd ../
ls
chown -R timol venv
sudo chown -R timol venv
python3 -m venv venv
l
source venv/bin/activate
pip install -r requirements.txt 
python -m pip install --upgrade pip
pwd
git status
git diff src/get_psse_scenarios_data.py
git add src/get_psse_scenarios_data.py
git commit -m "adding zero impedance config settings"
git push origin dev
git status
git push origin feature/dc_cist
git push origin feature/dc_cost
git status
git diff src/calculators/cost_calculator.py 
git statatus
cd src/
git status
gi add calculators/cost_calculator.py 
git add calculators/cost_calculator.py 
git commit -m "updating cost calc"
git status
git diff config/
git add config/
git commit -m "added constants to config"
git status
git diff controllers/study_controller.py
git status
git add controllers/study_controller.py 
git commit -m "clean study controller"
git status
git add data_managers/scenario_data_manager.py 
git status
gitk
sudo apt install gitk
gitk
git commit -m "added max gen peak load for all scenarios"
git status
git diff data_managers/study_data_manager.py 
git stastus
git status
git diff data_managers/
git commit -m "cleaned study data manager"
git status
git add data_managers/
git commit -m "cleaned study data manager"
git push origin feature/dc_cost
git status
git add calculators/
git commit -m "updated costs"
git push origin feature/dc_cost
git status
git checkout calculators/marginal_participation_calculator.py
git status
git checkout calculators/marginal_participation_calculator.py
git diff calculators/marginal_participation_calculator.py
git checkout calculators/marginal_participation_calculator.py
git status
git diff calculators/marginal_participation_calculator.py
git add calculators/marginal_participation_calculator.py
git commit -m "fix to marginal calc"
git push origin feature/dc_cost
git status
git add calculators/weighted_cost_calculator.py 
git commit -m "added non ajdusted costs"
git add config/settings.py 
git commit -m "updated file names"
git status
git diff data_managers/base_data_manager.py
git diff data_managers/cost_data_manager.py
git status
git diff data_managers/scenario_data_manager.py 
git add data_managers/
git commit -m "updated file read/write"
git status
got diff controllers/
git diff controllers/
git add controllers/
git commit -m "updated weighted calcs"
git push origin feature/dc_cost
exit
sudo apt update && sudo apt upgrade
b  exit
exit
sudo chown -R timol venv
sudo chown -R timol .
exit
sudo chown -R timol .
exit
sudo chown -R timol .
git status
git diff calculators/cost_calculator.py
git status
git add calculators/cost_calculator.py data_managers/cost_data_manager.py  config/settings.py 
git commit -m "writing out files"
git push origin feature/dc_cost
git status
git add calculators/ config/
git status
git commit -m "doing weighted calcs"
git push origin feature/dc_cost
git status
git add calculators/ config/
git commit -m "doing weighted calcs"
git push origin feature/dc_cost
git status
git add calculators/weighted_cost_calculator.py data_managers/
git status
git commit -m "doing weighted calcs"
git push origin feature/dc_cost
git status
git add data_managers/ config/ calculators/
git commit -m "doing weighted calcs"
git push origin feature/dc_cost
git status
git add calculators/cost_calculator.py 
git add config/
git add data_managers/
git commit -m "doing weighted calcs"
git push origin feature/dc_cost
git status
git add calculators/ git add data_managers/ git add config/
git status
git add data_managers/ git add config/
git add data_managers/ calculators/ data_managers/
git add config/
git status
git commit -m "doing weighted calcs"
git push origin feature/dc_cost
git status
git diff calculators/
git diff controllers/
git add calculators/ controllers/
git commit -m "doing weighted calcs"
exit
docker start 0e59
docker exec -it 0e591bbfa216 bash
exit
mkvmerge -o "HUB1022F - Chemical Equilibrium - Video 2.mkv" 
mkvmerge -o "HUB1022F - Chemical Equilibrium - Video 2.mkv" "Screen_Recording_20220419-202910_Samsung Notes.mp4" +"Screen_Recording_20220419-210118_Samsung Notes.mp4"
exit
ping google.com
exit
caja --no-desktop .
cd ../
git status
git diff
git status
git add .
git commit -m "updated draft"
git push origin draft
exit
source ~/.venv/bin/activate
python3 energies_from_pmf.py 
exit
sudo apt update && sudo apt upgrade
git status
docker exec -it 0e591bbfa216 bash
docker start 0e59
docker exec -it 0e591bbfa216 bash
exit
exit
sudo chown -R timol .
ewxit
exit
sudo chown -R timol .
exit
cd ../
git status
caja --no-desktop .
exit
docker exec -it 0e591bbfa216 bash
exit
git status
git add controllers/ data_managers/
git diff get_psse_scenarios_data.py 
git add get_psse_scenarios_data.py 
git status
git commit -m "added max gen load calc"
git push origin feature/dc_cots
git push origin feature/dc_cost
gitk
git stastus
git status
git add data_managers/
git commit -m "fix"
git push origin feature/dc_cost
git status
git add calculators/
git commit -m "fix diving by zero"
git status
git commit -m "fix diving by zero"
git add calculators/
git commit -m "fix diving by zero"
git push origin feature/dc_cost
git diff
git status
git add calculators/
git diff config/
git diff data_managers/
git commit -m "updating cost calcs for cross border lines"
git push origin feature/dc_cost
git status
git diff data_managers/scenario_data_manager.py
git stsatus
git status
git add config/settings.py 
git add calculators/ data_managers/
git status
git commit -m "updating cost calcs for cross border lines"
git push origin feature/dc_cost
exit
echo $XDG_SESSION_TYPE
sudo apt update && sudo apt upgrade
caja --no-desktop .
ssh ztimol@hpc.uct.ac.za
exit
cd ~/C6W/Studies/Dynamics/NAMD_plumed/MD/solution/PMF/pucker/aDGlc13_aDGlc14_bDGlc/
exit
ssh ztimol@hpc.uct.ac.za
exit
tar czf .venv.tar.gz .venv
exit
ssh ztimol@hpc.uct.ac.za
exit
sudo killall caja
exit
vmd -psf /home/timol/C6W/Studies/Dynamics/NAMD_plumed/MD/solution/PMF/pucker/aDGlc13_aDGlc14_bDGlcNAc/trajectories/aDGlc13_aDGlc14_bDGlcNAc.psf -dcd /home/timol/C6W/Studies/Dynamics/NAMD_plumed/MD/solution/PMF/pucker/aDGlc13_aDGlc14_bDGlcNAc/trajectories/aDGlc13_aDGlc14_bDGlcNAc_0-50ns.dcd
vmd -psf aDGlc13_aDGlc14_bDGlc.psf -dcd aDGlc13_aDGlc14_bDGlc_0-50ns.dcd 
pwd 
source ~/.venv/bin/activate
cd ~/C6W/Studies/structure_analysis/config_files/
cd ../
python3 config_files/aDGlc13_aDGlc14_bDGlc.conf 
python3 base.py -f config_files/aDGlc13_aDGlc14_bDGlc.conf 
vmd -psf /home/timol/C6W/Studies/Dynamics/NAMD_plumed/MD/solution/PMF/pucker/aDGlc13_aDGlc14_bDGlc/trajectories/aDGlc13_aDGlc14_bDGlc.psf -dcd /home/timol/C6W/Studies/Dynamics/NAMD_plumed/MD/solution/PMF/pucker/aDGlc13_aDGlc14_bDGlc/trajectories/aDGlc13_aDGlc14_bDGlc_0-50ns.dcd
python3 base.py -f config_files/aDGlc13_aDGlc14_bDGlc.conf 
python3 base.py -f config_files/aDGlc13_aDGlc14_bDGlc_plumed.conf 
cd images/
python3 line_plot
python3 line_plot.py 
quit()
source ~/.venv/bin/activate
python3 line_plot.py 
quit()
ssh ztimol@hpc.uct.ac.za
docker ps
docker ps -a
docker start 0e59
docker exec -it 0e591bbfa216 bash
docker ps
docker stop 0e591bbfa216
exit
git status
git diff calculators/cost_calculator.py 
gitk
cd ../
python3 -m venv venv
source venv/bin/activate
pip install -r requirements.txt 
pip install --no-cache-dir -r requirements.txt 
sudo apt install gcc g++ python3-dev
pip uninstall numpy
pip install -r requirements.txt 
sudo apt install subversion
pip install -r requirements.txt 
pip3 install -r requirements.txt 
cd src/
python3 main.py 
gitk
python3 main.py 
branch_costs_by_area
python3 main.py 
command dirs
python3 main.py 
source ../venv/bin/activate
python3 main.py 
git status
git add calculators/ config/ controllers/ data_managers/
git status
git add ../requirements.txt 
git commit -m "adding cross border calcs"
git push origin feature/dc_cost
python3 main.py 
command dirs
python3 main.py 
git status
git commit -m "updated draft"
git add .
git commit -m "updated draft"
git push origin draft
exit
source ~/.venv/bin/activate
python3 energies_from_pmf.py 
cd ../plot/
python3 pmf_multi_plumed.py 
exit
source ~/.venv/bin/activate
python3 line_plot.py 
exit
source ../venv/bin/activate
python3 main.py 
git status
git add calculators/
git commit -m "adding cross border calcs"
git push origin feature/dc_cost
python3 main.py 
self.summed_total_paid_by_gen_in_area_outside_area
python3 main.py 
self.gen_fractions_payable_for_from_bus_in_area
python3 main.py 
self.gen_fractions_payable_for_from_bus_in_area
python3 main.py 
pd.DataFrame(self.summed_gen_fractions_by_bus_payable.transpose())
python3 main.py 
self.summed_total_paid_by_gen_in_area_outside_area
python3 main.py 
self.summed_total_paid_by_load_in_area_within_area
python3 main.py 
self.weighted_sum_cost_of_gen_for_branches_within_area
python3 main.py 
git status
git add calculators/
git commit -m "adding cross border calcs"
git push origin feature/dc_cost
python3 main.py 
git status
git diff calculators/
git checkout calculators/
python3 main.py 
git status
git diff calculators/cost_calculator.py
python3 main.py 
self.summed_fraction_of_nodal_load_charge_payable_to_each_branch
python3 main.py 
git status
git diff calculators/cost_calculator.py 
python3 main.py 
git status
goit add calculators/ controllers/
git add calculators/ controllers/
git commit -m "adding cross border calcs"
git push origin feature/dc_cost
git status
git add .
git commit -m "adding cross border calcs"
git push origin feature/dc_cost
exit
sudo apt update && sudo apt upgrade
sudo systemctl restart NetworkManager
./restart_wifi.sh 
sudo systemctl restart NetworkManager
sudo systemctl stop NetworkManager
sudo systemctl start NetworkManager
exit
mkvmerge -o "HUB1022F - Acids and Bases - Video 4.mp4" "Screen_Recording_20220421-205003_Samsung Notes.mp4" +"Screen_Recording_20220421-205803_Samsung Notes.mp4"
exit
sudo apt update && sudo apt upgrade
mkvmerge -o "HUB1022F - Acids and Bases - Video 41.mp4" "HUB1022F - Acids and Bases - Video 4.mp4" +"Screen_Recording_20220423-205929_Samsung Notes.mp4" +"Screen_Recording_20220425-203046_Samsung Notes.mp4"
exit
plumed sum_hills --hills metad_pucker_hills_out.dat --mintozero --bin 179,179 --min 0,0 --max 2pi,pi --outfile metaD_sol_out_plumed.pmf
cd /home/timol/C6W/Studies/Dynamics/NAMD_plumed/MD/solution/PMF/pucker/aDGlc13_aDGlc14_bDManNAc/trajectories
cd ~/C6W/Studies/structure_analysis/plot/
source ~/.venv/bin/activate
python3 pmf_multi_plumed.py 
source ../venv/bin/activate
git status
python3 main.py 
git checkout data_managers/cost_data_manager.py 
python3 main.py 
c
python3 main.py 
c
python3 main.py 
c
python3 main.py 
c
python3 main.py 
git status
git diff calculators/cost_calculator.py 
python3 main.py 
git status
git diff calculators/cost_calculator.py
pwd
git diff calculators/cost_calculator.py
q
python3 main.py 
git status
git add config/ calculators/
git diff data_managers/base_data_manager.py
git add data_managers/base_data_manager.py
git commit -m "adding cross border calcs"
git push origin feature/dc_cost
git add data_managers/base_data_manager.py
python3 main.py 
git add data_managers/ calculators/
git commit -m "adding cross border calcs"
python3 main.py 
self.branch_costs_by_area
python3 main.py 
git status
git add config/ calculators/ data_managers/
git commit -m "adding cross border calcs"
git push origin feature/dc_cost
git status
git diff
git status
git add calculators/ con
git add calculators/ config/
git commit -m "adding cross border calcs"
git push origin feature/dc_cost
python3 main.py 
git status
git diff config/
git add config/ validators/
git commit -m "adding checks for non numeric values"
git push origin feature/dc_cost
git status
python3 main.py 
gen_cost_for_branches_in_all_areas
python3 main.py 
git checkout -b optimize_costs
git status
git add calculators/
git commit -m "added maps"
git push origin optimize_costs
pip install line_profiler
kernprof -l -v your_code.py
kernprof -l -v main.py 
python3 main.py 
kernprof -l main.py 
kernprof -l -v main.py 
python3 main.py 
gen_cost_for_branches_in_all_areas
python3 main.py 
kernprof -l -v main.py 
python3 main.py 
kernprof -l -v main.py 
python3 main.py 
c
weighted_sum_cost_of_gen_for_branches_in_all_areas
python3 main.py 
git status
git checkout calculators/
python3 main.py 
git status
git add calculators/cost_calculator.py 
git commit -m "added maps"
git push origin optimize_costs
kernprof -l -v main.py 
python3 main.py 
kernprof -l -v main.py 
git status
git checkout calculators/
python3 main.py 
kernprof -l -v main.py 
git status
git add calculators/
git commit -m "added maps"
git push origin optimize_costs
kernprof -l -v main.py 
python3 main.py 
self.weighted_sum_cost_of_gen_for_branches_in_all_areas
python3 main.py 
kernprof -l -v main.py 
git status
git add calculators/
git commit -m "added maps"
git push origin optimize_costs
python3 main.py 
git status
git add calculators/
git commit -m "added maps"
git push origin optimize_costs
kernprof -l -v main.py 
python3 main.py 
git status
git add calculators/cost_calculator.py 
git commit -m "added maps"
git push origin optimize_costs
python3 main.py 
git diff
git status
git add calculators/cost_calculator.py 
git commit -m "added maps"
git push origin optimize_costs
python3 main.py 
c
python3 main.py 
kernprof -l -v main.py 
git status
git add calculators/
git commit -m "added maps"
git push origin optimize_costs
python3 main.py 
tar czf .venv.tar.gz .venv
tar czf venv.tar.gz venv
exit
cd /home/timol/work/esp/sapp_transmission_study/sapp_transmission_pricing_app/app/src
git diff calculators/cost_calculator.py
exit
ssh ztimol@hpc.uct.ac.za
exit
ssh ztimol@hpc.uct.ac.za
exit
source ~/work/esp/sapp_transmission_study/sapp_transmission_pricing_app/app/venv/bin/activate
python3 main.py 
python3 test_inverse.py 
exit
ssh ztimol@hpc.uct.ac.za
reset
ssh ztimol@hpc.uct.ac.za
exit
ssh ztimol@hpc.uct.ac.za
exit
ssh ztimol@hpc.uct.ac.za
exit
source ../venv/bin/activate
python3 main.py 
git add calculators/
git status
git commit -m "added maps"
git push origin optimize_costs
git status
python3 main.py 
c
python3 main.py 
git status
git checkout calculators/
python3 main.py 
git status
git checkout calculators/
python3 main.py 
git status
git add calculators/
git commit -m "added maps"
git push origin optimize_costs
python3 main.py 
git status
git add calculators/
git commit -m "adding cross border calcs"
git push origin optimize_costs
python3 main.py 
git status
gita dd calculators/
git commit -m "added maps"
git add calculators/
git commit -m "added maps"
git push origin optimize_costs
git status
python3 main.py 
pip list
python3 main.py 
git diff calculators/
git checkout calculators/cost_calculator.py 
python3 main.py 
kernprof -l -v main.py 
python3 main.py 
git status
git diff calculators/
git checkout calculators/cost_calculator.py 
python3 main.py 
git status
git add calculators/
git commit -m "added maps"
git status
python3 main.py 
git status
git add calculators/
git commit -m "removing df queries"
git push origin optimize_costs
kernprof -l main.py 
python -m line_profiler main.py.lprof
kernprof -l main.py 
python -m line_profiler main.py.lprof
kernprof -l main.py 
python -m line_profiler main.py.lprof
python3 main.py 
kernprof -l main.py 
python -m line_profiler main.py.lprof
kernprof -l main.py 
python -m line_profiler main.py.lprof
kernprof -l main.py 
python -m line_profiler main.py.lprof
rm main.py.lprof
kernprof -l main.py 
python -m line_profiler main.py.lprof
rm main.py.lprof
kernprof -l main.py 
python -m line_profiler main.py.lprof
python3 main.py 
np.sum(np.array(x).transpose()[0])
python3 main.py 
git status
git add calculators/
git commit -m "adding maps"
git push origin optimize_costs
python3 main.py 
git status
git add calculators/
git commit -m "adding maps"
git push origin optimize_costs
git status
git diff calculators/
git status
python3 main.py 
gitk
python3 main.py 
git status
git add calculators/cost_calculator.py 
git commit -m "adding maps"
git push origin optimize_costs
git status
git diff calculators/cost_calculator.py
python3 main.py 
git status
git add calculators/cost_calculator.py 
git commit -m "adding maps"
git push origin optimize_costs
python3 main.py 
git status
git diff calculators/
git add calculators/cost_calculator.py 
git status
git add calculators/
git commit -m "adding maps"
git push origin optimize_costs
git status
python3 main.py 
git status
git diff data_managers/scenario_data_manager.py
git diff calculators/marginal_participation_calculator.py
git checkout calculators/marginal_participation_calculator.py
python3 main.py 
git status
git diff data_managers/
git checkout data_managers/
python3 main.py 
gitk
git checkou b0fe7fadbc5479569d269bd17de3ebee34712d1b
git checkout b0fe7fadbc5479569d269bd17de3ebee34712d1b
python3 main.py 
git status
git branch
git checkout optimize_costs
git status
python3 main.py 
exit
ssh ztimol@hpc.uct.ac.za
exit
git status
python3 pmf_multi_plumed.py 
cd ../custom_scripts/
python3 energies_from_pmf.py 
cd ../plot/
python3 pmf_multi_plumed.py 
exit
caja .
git status
git diff
git status
git add .
git commit -m "updated draft"
git push origin draft
git status
git add chapters/
git commit -m "updated draft"
git push origin draft
exit
sudo apt update && sudo apt upgrade
mkvmerge -o "HUB1022F - Buffers - Video 1" "Screen_Recording_20220425-205722_Samsung Notes.mp4" +"Screen_Recording_20220508-134528_Samsung Notes.mp4" +"Screen_Recording_20220508-140857_Samsung Notes.mp4"
exit
ssh ztimol@hpc.uct.ac.za
exit
sudo chown -R timol .
exit
caja .
git status
git add chapters/ appendices/
git commit -m "updated draft"
git push origin draft
exit
source ~/.venv/bin/activate
python3 energies_from_pmf.py 
cd ../plot/
python3 pmf_multi_plumed.py 
cd ../custom_scripts/
python3 pmf_multi_plumed.py 
python3 energies_from_pmf.py 
exit
source ../venv/bin/activate
python3 main.py
exit
caja .
exit
docker ps
docker images
git status
git diff ../controllers/psse_controller.py
git diff ../calculators/cost_calculator.py
git checkout ../calculators/cost_calculator.py
git diff scenario_data_manager.py
git status
cd ../
git diff ../config/settings.py
git diff config/settings.py
git add config/settings.py
git status
git diff controllers/psse_controller.py
git add controllers/psse_controller.py
git status
git diff controllers/scenario_controller.py 
git add controllers/scenario_controller.py 
git status
git diff data_managers/scenario_data_manager.py
git status
git diff data_managers/study_data_manager.py 
git diff data_managers/scenario_data_manager.py 
git status
git diff get_psse_scenarios_data.py 
git status
git add get_psse_scenarios_data.py  psse_middleware/
git status
git diff data_managers/weighted_cost_data_manager.py
git checkout data_managers/weighted_cost_data_manager.py
git status
git commit -m "fixes"
git push origin optimize_costs
git diff data_managers/
git status
exit
htop
exit
ssh ztimol@hpc.uct.ac.za
cd C6W/Studies/Dynamics/NAMD_plumed/MD/solution/PMF/pucker/aDGlc13_aDGlc14_bDGalNAc/trajectories/
emacs metaD_sol_out_plumed.pmf 
l
scp -r ztimol@hpc.uct.ac.za:/scratch/ztimol/Studies/Dynamics/NAMD_plumed/PMF/solution/pucker/aDGlc13_aDGlc14_bDGalNAc/simulations/aDGlc13_aDGlc14_bDGalNAc_r0/metaD_sol_out_plumed.pmf .
l
emacs -nw metaD_sol_out_plumed.pmf 
exit
caja .
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf main.pdf
git status
git add chapters/ appendices/
git commit -m "updated draft"
git push origin draft
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf main.pdf
exit
git status
source ~/.venv/bin/activate
python3 pmf_multi_plumed.py 
cd ../custom_scripts/
python3 energies_from_pmf.py 
exit
mv ../glc/ .
mv ../glcnac/ .
cd glc
vmd -psf setup_files/solvated/solvate.rst7 -dcd md_sol_glycam0.dcd
vmd -rst setup_files/solvated/solvate.rst7 -dcd md_sol_glycam0.dcd
vmd -rst7 setup_files/solvated/solvate.rst7 -dcd md_sol_glycam0.dcd
vmd -parm7 setup_files/reordered.parm7 -dcd md_sol_glycam0.dcd
cd ../glcnac/
vmd -parm7 setup_files/reordered.parm7 -dcd md_sol_glycam.dcd 
vmd -parm7 setup_files/structure/1_noWAT.parm7 -dcd x.dcd 
exitg
exit
git status
git diff data_managers/scenario_data_manager.py
git diff get_psse_scenarios_data.py
git add psse_middleware/
git add get_psse_scenarios_data.py 
git commit -m "reset flags"
git push origin optimize_costs
git checkout dev
git status
git diff get_psse_scenarios_data.py
git add get_psse_scenarios_data.py 
git diff psse_middleware/
git add psse_middleware/
git status
git commit -m "fix to load retrieval"
python3
git status
git add get_psse_scenarios_data.py psse_middleware/
git commit -m "added tx R to zero"
git push origin branch optimize_costs
git push origin optimize_costs
git diff data_managers/
git status
git diff psse_middleware/
git add psse_middleware/
git commit -m "adding change tz"
git push origin optimize_costs
exit
redshift
git status
git diff data_managers/study_data_manager.py 
git status
git add data_managers/study_data_manager.py 
git add data_managers/scenario_data_manager.py 
git status
git commit -m "changed to peak load"
git push origin optimize_costs
git diff analysis.py 
git status
source ~/.venv/bin/activate
python3 main.py
git push origin optimize_costs
python3 main.py
git stastus
git status
git add data_managers/
git commit -m "changed dc load gen"
gitk
git push origin optimize_costs
git status
python3 main.py
exit
caja .
exit
source venv/bin/activate
cd src/
git status
git diff
git diff calculators/
git add calculators/
git commit -m "disabled psse y matrix"
status
git status
git checkout dev
git checkout analysis.py 
git status
git push origin optimize_costs
ogit checkout dev
git checkout dev
git pull  origin optimize_costs
git push origin dev
git status
python3 main.py
git status
python3 main.py
c
python3 main.py
git status
git add calculators/
git commit -m "refactor cost calculator to improve speed"
python3 main.py
git push origin dev
python3 main.py
git status
git add calculators/
git commit -m "refactor cost calculator to improve speed"
git push origin dev
python3 main.py
command dirs
python3 main.py
git status
git add calculators/
git commit -m "refactor cost calculator to improve speed"
git push origin dev
python3 main.py
val
python3 main.py
git status
git diff calculators/
git add cakl
git add calculators/
git commit -m "refactor cost calculator to improve speed"
git push origin dev
git status
python3 main.py
git status
git add calculators/
git commit -m "refactor cost calculator to improve speed"
git push origin dev
python3 main.py
git status
git add calculators/
git commit -m "refactor cost calculator to improve speed"
git push origin dev
git status
git push origin dev
pip install -r re
pip install -r ../requirements.txt 
python3 main.py
git status
git add ../requirements.txt 
git add config/settings.py 
git status
git commit -m "adding .env file"
git push origin dev
python3 main.py
git status
git add get_psse_scenarios_data.py  config/settings.py 
git status
git commit -m "adding .env file"
git push origin dev
exit
sudo apt update && sudo apt upgrade
caja --no-desktop .
caja .
exit
source venv/bin/activate
cd src/
git status
git checkout -b optimize_speed
python main.py
exit
pwd
git status
git add .
git commit -m "updated draft"
git push origin draft
git status
exit
ssh ztimol@hpc.uct.ac.za
exit
git status
git checkout ../calculators/
got checkout dev
git checkout dev
git status
git diff settings.py
cd ../
git diff get_psse_scenarios_data.pyxcd
git diff get_psse_scenarios_data.py
git status
git diff validators/study_data_validator.py
git status
git add config/ validators/
git diff .env
git commit -m "updated zero limit"
git push origin dev
python3 main.py
self.generation_nodal_cost_vector
python3 main.py
git status
git add ../.gitignore 
python3 main.py
git status
git diff data_managers/scenario_data_manager.py
git status
python3 main.py
git status
git diff calculators/cost_calculator.py 
git diff config/settings.py 
git status
git diff data_managers/scenario_data_manager.py 
git diff get_psse_scenarios_data.py 
source ../venv/bin/activate
python3 main.py
git diff calculators/cost_calculator.py 
git status
git diff calculators/cost_calculator.py 
git add calculators/cost_calculator.py 
git commit -m "set dc branch costs to zero"
git status
git push origin dev
git diff data_managers/scenario_data_manager.py
git add data_managers/scenario_data_manager.py
git commit -m "refactor"
git push origin dev
git status
git diff config/settings.py
git status
git diff config/settings.py 
git diff get_psse_scenarios_data.py
python3 main.py
gitk
git branch
python3 main.py
git status
git diff calculators/ptdf_calculator.py
git checkout calculators/ptdf_calculator.py
git status
git diff get_psse_scenarios_data.py
python3 main.py
git diff
git status
git diff data_managers/scenario_data_manager.py 
git diff data_managers/base_data_manager.py 
git status
git diff calculators/cost_calculator.py
git status
git diff data_managers/study_data_manager.py
git status
git diff data_managers/study_data_manager.py
python3 main.py
git status
git diff calculators/cost_calculator.py 
python3 main.py
np.tile(self.branch_costs, [self.all_bus_numbers.size. 1)
python3 main.py
caja --no-desktop .
exit
source ../venv/bin/activate
python3 main.py
git checkout calculators/ptdf_calculator.py
python3 main.py
git diff calculators/cost_calculator.py 
python3 main.py
git status
git diff data_managers/base_data_manager.py 
git add data_managers/base_data_manager.py 
git commit -m "adding id to branch name"
git status
git diff data_managers/scenario_data_manager.py
git add data_managers/scenario_data_manager.py
git commit -m "updating branch order"
git status
git diff data_managers/study_data_manager.py 
git diff calculators/cost_calculator.py 
git status
git diff get_psse_scenarios_data.py
git status
git diff config/settings.py
git diff get_psse_scenarios_data.py 
git status
git diff data_managers/study_data_manager.py 
git status
git diff data_managers/study_data_manager.py
git status
git diff calculators/
git status
git diff data_managers/study_data_manager.py 
git add data_managers/study_data_manager.py 
git status
git add calculators/cost_calculator.py 
git status
git commit -m "fixes dc costs"
git push origin dev
git status
python3 main.py
git status
git diff validators/study_data_validator.py 
git sttus
git status
python3 main.py
git status
git diff get_psse_scenarios_data.py
python3 main.py
git status
git diff config/settings.py 
git add config/settings.py 
git commit -m "updated settings"
python3 main.py
git status
git add calculators/cost_calculator.py git add data_managers/cost_data_manager.py 
git add calculators/cost_calculator.py data_managers/cost_data_manager.py 
git status
git commit -m "adding more cost calcs"
git push origin dev
git diff validators/study_data_validator.py
git add validators/study_data_validator.py
git commit -m "updated settings"
git status
git diff config/settings.py
git add config/settings.py
git commit -m "updated settings"
git push origin dev
python3 main.py
self.internal_receipts
python3 main.py
c
python3 main.py
git status
git diff calculators/weighted_cost_calculator.py
git status
git add calculators/weighted_cost_calculator.py
git add data_managers/weighted_cost_data_manager.py
git commit -m "updated weighted cost calc"
git status
git diff data_managers/study_data_manager.py
git diff config/settings.py 
git add config/settings.py 
git commit -m "updated settings"
git status
git diff data_managers/study_data_manager.py 
git diff get_psse_scenarios_data.py
git status
git add config/
git commit -m "updated settings"
git status
git diff get_psse_scenarios_data.py 
git status
python3 main.py
git status
git add calculators/ config/
git commit -m "updated settings"
git push origin dev
python3 main.py
git status
git diff calculators/weighted_cost_calculator.py
git add calculators/
git commit -m "updated calcs"
python3 main.py
git add calculators/ptdf_calculator.py 
git commit -m "add comments"
git push origin dev
python3 main.py
git status
git diff calculators/cost_calculator.py 
git staus
git status
git checkout calculators/cost_calculator.py 
git status
git checkout calculators/cost_calculator.py 
python3 main.py
git status
git add calculators/cost_calculator.py 
git add data_managers/
git commit -m "added cost output"
git status
git push origin dev
git status
git add data_managers/flycheck_study_data_manager.py
git commit -m "remove flycheck"
git status
git push origin dev
python3 main.py
git status
git diff get_psse_scenarios_data.py 
git add get_psse_scenarios_data.py 
git commit -m "added type one bus check"
git push origin dev
python3 main.py
git add calculators/ptdf_calculator.py 
python3 main.py
git status
git diff data_managers/study_data_manager.py 
git status
git diff data_managers/scenario_data_manager.py 
git add data_managers/scenario_data_manager.py 
git status
git diff calculators/cost_calculator.py 
git status
git diff calculators/weighted_cost_calculator.py 
git add calculators/weighted_cost_calculator.py 
git status
python3 main.py
git status
git diff data_managers/study_data_manager.py 
git status
git add data_managers/study_data_manager.py calculators/cost_calculator.py 
python3 main.py
git commit -m "minor fixces"
git status
got diff config/settings.py 
git diff config/settings.py 
git add config/settings.py 
git commit -m "updated settings"
git push origin dev
git status
python3 ~/tmp/multi.py 
python3 main.py
git status
git checkout controllers/study_controller.py
python3 main.py
git status
git add controllers/study_controller.py 
git commit -m "added multiprocessing"
git push origin dev
python3 main.py
git status
git add calculators/ptdf_calculator.py 
git add config/settings.py 
git add controllers/scenario_controller.py 
git diff validators/
git add validators/
git status
git diff controllers/
git add controllers/
git status
git commit -m "updated processing"
git push origin dev
python3 main.py
git status
python3 main.py
git status
git add calculators/ controllers/
git commit -m "added print statements"
git push origin dev
git status
exit
git status
git add get_psse_scenarios_data.py 
git status
git commit -m "updated check for type one bus"
git status
git add gui/window_gui.py 
git commit -m "removed multithreading"
git status
git push origin dev
git checkout controllers/study_controller.py 
git diff config/settings.py 
git checkout config/settings.py 
source ../venv/bin/activate
python3 main.py
git stsatus
git status
git add gui/
git commit -m "revert threading"
git push origin dev
git status
exit
git status
git diff chapter_2.tex 
git add chapter_2.tex 
git add chapter_6.tex 
git status
git commit -m "updated draft"
git status
git push origin draft
git status
git ../
git add ../
git status
git commit -m "updated draft"
git push origin draft
exit
git status
python3 main.py
git status
git diff controllers/study_controller.py 
git commit -m "revert multiprocessing"
git status
git add controllers/study_controller.py 
git commit -m "revert multiprocessing"
git push origin dev
source ../venv/bin/activate
python3 main.py
git status
git add get_psse_scenarios_data.py 
git commit -m "adding slack bus number one check"
git push origin dev
python3 main.py
exit
git status
git diff
git status
git add chapters/
git commit -m "updated draft"
git push origin draft
caja . --no-desktop
exit
sudo apt update && sudo apt upgrade
caja . --no-desktop
exit
caja . --no-desktop
git status
git add chapters/
git commit -m "updated draft"
git status
git add .
git commit -m "updated draft"
git push origin draft
exit
git status
cd ../
git diff calculators/cost_calculator.py 
git checkout calculators/cost_calculator.py 
git status
git diff data_managers/study_data_manager.py 
git checkout data_managers/study_data_manager.py 
git status
git diff controllers/psse_controller.py 
git add controllers/psse_controller.py 
git status
git diff get_psse_scenarios_data.py 
git add get_psse_scenarios_data.py 
git status
git diff psse_middleware/
git add psse_middleware/
git status
git diff validators/
git add validators/
git status
git commit -m "added psse35"
git push origin dev
exit
htop
exit
htop
exit
caja . --no-desktop
exit
caja . --no-desktop
git status
git add chapters/ appendices/
git commit -m "added psse35"
git push origin draft
exit
caja . --no-desktop
exit
sudo apt update && sudo apt upgrade
sudo systemctl restart networking.service 
sudo systemctl restart NetworkManager.service 
sudo apt update && sudo apt upgrade
sudo systemctl restart NetworkManager.service 
sudo systemctl stop NetworkManager.service 
sudo systemctl start NetworkManager.service 
caja . --no-desktop
git status
git add .
git commit -m "updated draft"
git push origin draft
git status
git add .
git commit -m "updated draft"
git push origin draft
git status
git add .
git commit -m "updated draft"
git push origin draft
exit
sudo systemctl restart NetworkManager.service 
sudo systemctl restart NetworkManager.service
sudo systemctl stop NetworkManager.service 
sudo systemctl start NetworkManager.service 
sudo systemctl restart NetworkManager.service
exit
source ../venv/bin/activate
git status
git diff config/settings.py 
python3 main.py
git status
git add calculators/__init__.py 
gitadd config/__init__.py 
git add config/__init__.py 
git add controllers/__init__.py 
git add data_managers//__init__.py 
git add data_managers/__init__.py 
git status
git add gui/__init__.py 
git status
git commit -m "added init"
git push origin dev
python3 main.py
git status
python3 main.py
git statuis
git status
git diff config/settings.py 
git status
git add config/settings.py 
git commit -m "updated config"
git push origin dev
python3 main.py
exit
sudo apt update && sudo apt upgrade
sudo systemctl restart NetworkManager.service
sudo killall caja .
sudo killall caja
htop
exit
caja . --no-dektop
caja . --no-desktop
git status
git add .
command dirs
git commit -m "updated draft"
git push origin dev
git push origin draft
git status
l
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf main.pdf
exit
git status
git diff data_managers/scenario_data_manager.py
git add data_managers/scenario_data_manager.py
git commit -m "added comment on loads"
git status
git puhs origin dev
git push origin dev
source ../venv/bin/activate
git status
git diff calculators/cost_calculator.py 
python3 main.py
pwd
python3 main.py
git status
git add config/settings.py 
git commit -m "added env vars"
git push origin dev
git status
python3 main.py
git status
git checkout gui/
git checkout controllers/
git status
git checkout analysis.py 
git checkout main.py
git status
git checkout calculators/
git checkout data_managers/
git add ../.gitignore 
git status
git commit -m "added git igntore"
rm .env 
rm main.py.lprof 
git status
git push origin dev
git status
python3 main.py 
git status
python3 main.py 
git status
git add gui/
git commit -m "added branch costs to gui"
git status
git push origin dev
python3 main.py 
git status
git diff validators/study_data_validator.py 
python3 main.py 
git status
git diff gui/layout.py 
git diff gui/window_gui.py 
git checkout gui/window_gui.py 
git checkout gui/layout.py 
git status
python3 main.py 
git status
python3 main.py 
git status
git diff data_managers/scenario_data_manager.py 
git add data_managers/
git status
git add gui/
git add validators/
git commit -m "updating checks and window"
git push origin dev
git status
git add analysis.py 
git commit -m "updating analysis"
git push origin dev
exit
sudo apt update && sudo apt upgrade
git status
git add conte
git add controllers/
git commit -m "updating psse controller"
git push origin dev
source ../venv/bin/activate
python3 main.py 
git status
git add .
git commit -m "fixes to config"
git push origin dev
exit
sudo snap refresh
sudo snap install calibre
sudo snap install --edge calibre
sudo apt install calibre
sudo apt update && sudo apt upgrade
htop
exit
cat /proc/cpuinfo  | grep 'name'| uniq
sudo snap refresh
sudo systemctl restart networking.service 
sudo systemctl restart NetworkManager.service
cd Downloads/
sudo dpkg -i teamviewer_15.30.3_amd64.deb 
exit
ssh timol@192.168.16.101
exit
source venv/bin/activate
cd src/
python3 main.py 
cd ../
pip install -r requirements.txt 
python3 main.py 
cd src/
python3 main.py 
git status
cd ../
git status
cd ../
git status
cd ../
git status
cd ../
git status
cd app
cd sapp_transmission_pricing_app/
git status
git add app
git status
git commit -m "change dir structure"
git status
git add .gitignore 
git commit -m "change ignore"
git staus
git status
git push origin dev
cd app/sapp_transmission_pricing_tool/src/
python3 main.py 
git status
python3 main.py 
git status
git add calculators/ gui/
git commit -m "added flag for flow direction"
git push origin dev
exit
teamviewer 
sudo systemctl restart NetworkManager.service
git status
exit
sudo systemctl restart NetworkManager.service
sudo apt install cpufrequtils 
sudo systemctl restart NetworkManager.service
git status
exit
cd Downloads/
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=UCT_Transcript1.pdf UCT_Transcript.pdf 
exit
ssh ztimol@hpc.uct.ac.za
htop
ssh ztimol@hpc.uct.ac.za
exit
ssh ztimol@hpc.uct.ac.za
exit
ssh ztimol@hpc.uct.ac.za
reset
ssh ztimol@hpc.uct.ac.za
qstat
ssh ztimol@hpc.uct.ac.za
exit
source ../venv/bin/activate
python3 main.py 
git status
exit
sudo apt install indicator-cpufreq
cpupower frequency-info
sudo apt install libreoffice-pdfimport 
sudo apt install scribus
sudo apt install gimp
sudo apt update && sudo apt uprade
sudo apt update && sudo apt upgrade
sudo systemctl restart networking.service 
i3-msg workspace $(wmctrl -d | rev | cut -c 1 | awk -v RS='\\s+' '{ a[$1] } END { for(i = 1; i in a; ++i); print i }')
bash ~/tmp/new_workspace.sh 
~/tmp/new_workspace.sh 
exit
chmox +x new_workspace.sh 
chmod +x new_workspace.sh 
./new_workspace.sh 
exit
cd Downloads/
l
sudo bash anyconnect-linux64-#.#.#####-core-vpn-webdeploy-k9.sh
sudo bash anyconnect-linux64-4.10.03104-core-vpn-webdeploy-k9.sh 
ssh ztimol@hpc.uct.ac.za
exit
htop
exit
cd Downloads/
cd ../
du -hcs Downloads/
du -hcs Documents/
du -hcs C6W/
du -hcs studies/
du -hcs work/
du -hcs /home/timol/
du -hcs /home/timol/.virtualbox_volumes/
l
du -hcs /home/timol/tmp/
du -hcs /home/timol/.VirtualBox\ VMs/
ls -lha /home/timol/.VirtualBox\ VMs/
ls -lha /home/timol/.VirtualBox\ VMs/Windows\ 10/
ls -lha /home/timol/.virtualbox_volumes/
du -hcs /home/timol/.virtualbox_volumes/
ks -lha /home/timol/.virtualbox_volumes/
ls -lha /home/timol/.virtualbox_volumes/
exit
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=IB_School_Leaving_Certificate_not_certified_small.pdf IB_School_Leaving_Certificate_not_certified.pdf
i3-msg workspace $(wmctrl -d | rev | cut -c 1 | awk -v RS='\\s+' '{ a[$1] } END { for(i = 1; i in a; ++i); print i }')
sudo apt install wmctrl
i3-msg workspace $(wmctrl -d | rev | cut -c 1 | awk -v RS='\\s+' '{ a[$1] } END { for(i = 1; i in a; ++i); print i }')
sudo apt update && sudo apt upgrade
/opt/cisco/anyconnect/bin/vpnui
sudo apt install rclone
rclone -h
rclone rcd --rc-web-gui
sudo apt update && sudo apt upgrade
wget 'http://org.downloadcenter.samsung.com/downloadfile/ContentsFile.aspx?CDSite=UNI_LEVANT&CttFileID=5999976&CDCttType=DR&ModelType=N&ModelName=SL-M2020&VPath=DR/201503/20150311160833703/ULD_v1.00.35.tar.gz'
l
tar 'ContentsFile.aspx?CDSite=UNI_LEVANT&CttFileID=5999976&CDCttType=DR&ModelType=N&ModelName=SL-M2020&VPath=DR%2F201503%2F20150311160833703%2FULD_v1.00.35.tar.gz'
tar zxvf 'ContentsFile.aspx?CDSite=UNI_LEVANT&CttFileID=5999976&CDCttType=DR&ModelType=N&ModelName=SL-M2020&VPath=DR%2F201503%2F20150311160833703%2FULD_v1.00.35.tar.gz'
sudo ./uld/install
sudo ./uld/install.sh 
rm 'ContentsFile.aspx?CDSite=UNI_LEVANT&CttFileID=5999976&CDCttType=DR&ModelType=N&ModelName=SL-M2020&VPath=DR%2F201503%2F20150311160833703%2FULD_v1.00.35.tar.gz' 
l
exit
gv
gview
vmd
sudo apt install avogadro
sudo apt remove avogadro --purge
sudo apt autoremove
cd Downloads/
vmd 2kuy.pdb 
exit
cd Downloads/
gmx pdb2gmx -f 2kuy.pdb -o 2kuy_processed.gro -water spce
8
gmx pdb2gmx -f 2kuy.pdb -o 2kuy_processed.gro -water spce
exit
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=UCT_Transcript_certified_small.pdf UCT_Transcript_certified.pdf
exit
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=ZT-Masters Certificate_certified.pdf ZT-Masters Certificate_certifie.pdf
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile="ZT-Masters Certificate_certified.pdf" "ZT-Masters Certificate_certifie.pdf"
exit
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile="IB_School_Leaving_Certificate_certified.pdf" "IB_School_Leaving_Certificate_certifie.pdf"
exit
python3
git status
cd ../
git status
rm -r ../tmp/
git diff controllers/psse_controller.py
git status
git diff psse_middleware/
git status
git add .
git commit -m "bug fixes"
git push origin dev
source ../venv/bin/activate
python main.py 
python3 main.py 
git status
git add images/
git add gui/
git commit -m "added notification window"
git push origin dev
git status
git branch -a
git checkout remotes/origin/optimize_costs
git checkout dev
git branch
git checkout feature/dc_cost
git checkout feature/dc
git checkout feature/config
git checkout feature/ymatrixcalc
gitk
git log
git status
git checkout dev
git status
git branch
gitk
git checkout 3e128040261ce56eb7c243393c86128c675aa9cf
gitk
git checkout dev
git status
python3 main.py 
git status
python3 main.py 
git status
git diff controllers/scenario_controller.py 
git add controllers/scenario_controller.py 
git add controllers/study_controller.py 
git add analysis.py 
git commit -m "added threading"
git push origin dev
git stauts
git status
git add config/ controllers/
git commit -m "added threading"
git push origin dev
pwd
exit
source ~/.venv/bin/activate
python3 base.py -f config_files/aDGlc13_aDGlc14_bDGlcNAc.conf 
vmd /home/timol/C6W/Studies/Dynamics/NAMD/Shigella/MD/Solution/general_structures/aDGlc13_aDGlc14_bDGlcNAc/trajectories/aDGlc13_aDGlc14_bDGlcNAc.pdb
python3 base.py -f config_files/aDGlc13_aDGlc14_bDGlcNAc.conf 
git status
python3 base.py -f config_files/aDGlc13_aDGlc14_bDGlcNAc.conf 
ring_pucker_atom_selection
python3 base.py -f config_files/aDGlc13_aDGlc14_bDGlcNAc.conf 
ring_atom_coordinates
python3 base.py -f config_files/aDGlc13_aDGlc14_bDGlcNAc.conf 
python3 main.py 
python3 base.py -f config_files/aDGlc13_aDGlc14_bDGlcNAc.conf 
python3 main.py 
python3 base.py -f config_files/aDGlc13_aDGlc14_bDGlcNAc.conf 
exit
git status
git diff
git status
git add .
git commit -m "updated draft"
git push origin draft
caja . --no-desktop
git status
git add .
git commit -m "updated draft"
git push origin draft
exit
sudo apt install wine-stable
exit
chmod +x CarbBuilder2.exe 
exit
CarbBuilder2.exe -h
sudo apt install wine64
sudo apt install mono-runtime
CarbBuilder2.exe -h
CarbBuilder2.exe -i "bDQui3NAc(1-3)bDRib"
CarbBuilder2.exe -i "bDQui3NAc(1->3)bDRib"
vmd output.pdb -PSF
CarbBuilder2.exe -i "bDQui3NAc(1->3)bDRib" -psf
CarbBuilder2.exe -h
CarbBuilder2.exe -i "bDQui3NAc(1->3)bDRib" -PSF
CarbBuilder2.exe -i "bDRib" -PSF
CarbBuilder2.exe -i "bDQui3NAc" -PSF
exit
sudo apt install gromacs
sudo snap refresh
sudo add-apt-repository multiverse
sudo apt update
sudo apt update && sudo apt upgrade
vmd -psf solvate.psf -pdb solvate.psf 
vmd -psf solvate.psf -pdb solvate.pdb 
cd ../../
cd ../
cd ../7a_s_flexneri/7a_s_flexneri_6ru/ring_restrained/simulations/setup_files/solvated/
vmd -psf solvate.psf -pdb solvate.pdb 
cd ../../../../../../1a_s_flexneri/1a_s_flexneri_3ru/simulations/ring_restrained/setup_files/solvated/
vmd -psf solvate.psf -pdb solvate.pdb 
vmd -psf step1_glycan_modeler.psf -pdb step1_glycan_modeler.p
vmd -psf step1_glycan_modeler.psf -pdb step1_glycan_modeler.pdb
cd /home/timol/Downloads/charmm-gui-5799258023
cd namd/
vmd -psf step3_input.psf -pdb step3_input.pdb
cd ..
cd ~/Downloads/charmm-gui-5799306320/namd/
vmd -psf step3_input.psf -pdb step3_input.pdb
caja .
git status
git add .
git commit -m "updated draft"
git push origin draft
npm install
yarn install
exit
sudo apt update && sudo apt upgrade
sudo apt autoremove
sudo apt install nodejs
sudo apt install npm
sudo apt remove --purge nodeks
sudo apt remove --purge nodejs
curl -sL https://deb.nodesource.com/setup_16.x | sudo -E bash -
curl -sL https://deb.nodesource.com/setup_18.x | sudo -E bash -
udo apt-get install -y nodejs
sudo apt-get install -y nodejs
sudo npm install -g npm
sudo apt update
sudo npm install -g npm
exit
npm install
sudo npm install -g npm 
npm install
l
ng serve    – – open
npm install @angular/cli
ng serve ––open
npm install @angular/cli
npm install
rm -r node_modules/
npm install
exigt
exit
npm install
npm run-script ng serve ––open
npm run-script ng serve – – open
npm run-script ng serve –– open
npm run-script ng serve
git status
npm run-script ng serve
exit
ng new app
ls
cd app/
ls
ng serve
cd ../../
rm -r newang/
sudo rm -r newang/
ls
exit
sudo npm install -g npm
sudo apt-get install -y nodejs
sudo apt autoremove
sudo apt-get install -y nodejs
sudo npm install -g npm
sudo npm install -g tide typescript prettier
sudo npm install -g eslint babel-eslint eslint-plugin-react eslint-plugin-jsx eslint-plugin-flowtype eslint-plugin-react-app
npm install -g @angular/cli
sudo npm install -g @angular/cli
sudo npm uninstall -g @angular/cli
sudo npm install -g @angular/cli
curl -o- https://raw.githubusercontent.com/nvm-sh/nvm/v0.39.1/install.sh | bash
exit
nvm use 16
nvm install 16
nvm use 16
nv ls
nvm ls
node -v
npm install
npm run-script ng serve
exit
npm run-script ng serve
exit
vmd -pdb 7a_s_flexneri_6ru.pdb -psf 7a_s_flexneri_6ru.psf 
exit
caja .
git status
git add chapters/
git commit -m "updated draft"
git push origin draft
git status
git add .
git commit -m "updated draft"
git push origin draft
git status
git add .
git commit -m "updated draft"
git push origin draft
git status
git checkout .
git status
rm chapters/chapter_1.tex
cd chapters/
rm chapter_10.tex 
rm chapter_11.tex 
rm chapter_9.tex 
git status
git reset --hard HEAD
git status
git add ../main.tex 
git add .
git status
git commit -m "updated draft"
git push origin draft
exit
source ../venv/bin/activate
git status
python3 main.py 
git status
git add calculators/
git commit -m "updating marginal cost calcs"
git push origin dev
git status
git diff main.py 
git commit -m "fix to run"
git push origin dev
git status
git diff
git add main.py 
git commit -m "fix to run"
git push originn dev
git push origin dev
git status
git diff config/settings.py 
git config/settings.py 
git add config/settings.py 
git commit -m "fix config"
git push origin dev
python3 main.py 
git status
git add gui/
git diff calculators/
git add calculators/
git commit -m "fix to window layout and calculator"
git push origin dev
python3 main.py 
pip install -r ../requirements.txt 
python3 main.py 
git status
git diff gui/layout.py 
git idff gui/window_gui.py 
git diff gui/window_gui.py 
git status
git add gui/ images/ ../requirements.txt licence.txt 
git status
git commit -m "updaeted gui"
git push origin dev
python3 main.py 
git status
git add gui/ config/
python3 main.py 
git add gui/
git add config/
git commit -m "updaeted gui"
git push origin dev
python3 main.py 
git status
git add config/ 
git diff gui/
git add gui/
python3 main.py 
git status
git add gui/ con
git add gui/ config/
git commit -m "updaeted gui"
git push origin dev
rm -r tmp/
git status
git push origin dev
git status
python3 main.py 
git status
git add gui/ licence.txt
git commit -m "updated licence"
git push origin dev
git status
python3 main.py 
exit
curl -sL https://deb.nodesource.com/setup_16.x | sudo -E bash -
sudo apt install -y nodejs
sudo snap refresh
git status
git diff gui/layout.py 
source ../venv/bin/activate
python3 main.py 
cd ../
source ../venv/bin/activate
python3 main.py 
exit
sudo apt update && sudo apt upgrade
sudo dpkg-reconfigure gnome-applets
sudo dpkg-reconfigure mate-applets
sudo dpkg-reconfigure cpufrequtils 
sudo dpkg-reconfigure mate-applets-common 
sudo dpkg-reconfigure mate-applet-appmenu 
exit
sudo dpkg-reconfigure mate-applets
eixt
exit
g++ main.cpp 
l
a.out
./a.out
g++ main.cpp 
./a.out
g++ main.cpp 
./a.out
exit
sudo apt install debconf
sudo apt autoremove
sudo apt install debconf
source ../venv/bin/activate
git status
python3 main.py 
git status
git checkout -b psse_version
git add gui/
git commit -m "added psse version dropdown"
git push origin psse_version
git checkout dev
git status
git add disclaimer.txt 
git add ../InnoSapp.iss 
git status
git commit - "added discalimer and inno file"
git commit -m "added discalimer and inno file"
git push origin dev
python main.py 
python3 main.py 
git status
git add calculators/ config/
git commit -m "updated ptdf to allow using psse y matrix"
git push origin dev
exit
microsoft-edge
./a.out 
exit
jupyter notebook
exit
htop
source ~/.venv/bin/activate
pip install jupyter
exit
caja .
git status
git add .
git commit -m "updated draft"
git push origin draft
exit
git status
git branch
git checkout psse_version
git pull origin dev
git checkout dev
git pull origin dev
git checkout psse_version
git push origin psse_version
git checkout dev
git pull origin psse_version
git config pull.rebase false
git pull origin psse_version
git status
git commit -m "added dropdown for psse_version"
git push origin dev
source ../venv/bin/activate
python3 main.py 
git status
git add gui/ controllers/ config/ psse_middleware/ validators/
git commit -m "added psser version and checks"
git push origin dev
python3 main.py 
command dirs
python3 main.py 
git status
git add analysis.py gui/ validators/
git commit -m "added psse version and checks"
git push origin dev
git status
git add analysis.py 
git commit -m "added psse version and checks"
git push origin dev
python3 main.py 
git status
python3 main.py 
l
rm 'Scn-scnA_ScnA_2DC\ Line\ -\ Update\ July\ 25_NoLosses.sav 
rm 'Scn-scnA_ScnA_2DC\ Line\ -\ Update\ July\ 25_NoLosses.sav'
l
python3 main.py 
git status
git diff calculators/
git add calculators/
git status
git add data_managers/
git add disclaimer.txt 
git diff gui/
git add gui/
git status
git commit -m "adding input file copy"
git push origin dev
git status
git add analysis.py  main.py 
git commit -m "adding input file copy"
git push origin dev
git status
python3 main.py 
git status
git add calculators/ data_managers/ psse_middleware/ psse_tool.py 
git commit -m "added shunts to admittance matrix"
git push origin dev
git diff main.py 
git diff analysis.py 
git status
git add ../calculations.py 
git commit -m "added pseudo"
git push origin dev
python3 main.py 
source ../venv/bin/activate
python3 main.py 
source ../venv/bin/activate
python3 main.py 
htop
ping nytimes.com
ping latimes.com
ping reddit.com
ping harvard.edu
ping miamiherald.com
ping ewn.co.za
ping news24.com
ping anydesk.com
exit
top
exit
udo snap refresh
sudo snap refresh
sudo apt update && sudo apt upgrade
exit
cd ../
source ../venv/bin/activate
python3 main.py 
git status
git add git status
git add .
git status
git commit -m "updated stdout"
git push origin dev
git status
pythjon3
python3
python3 main.py 
git status
git diff analysis.py 
git status
git diff psse_tool.py 
git add psse_tool.py 
git diff psse_middleware/psse_middleware.py 
git add psse_middleware/psse_middleware.py 
git status
git add calculators/
git diff config/
git add config/
git status
git add ../calculations.py 
git add data_managers/
git status
git add README.md 
git commit -m "added shunt calcs"
git push origin dev
git status
git diff config/settings.py 
git add config/settings.py 
git diff analysis.py 
git add analysis.py 
git commit -m "added shunt calcs"
git push origin dev
python3 main.py 
mkdir tmp
python3 main.py 
touch tmp/log_file.txt
python3 main.py 
git status
git add git status
git status
git add psse_tool.py 
git add gui/custom_multiline.py 
git add psse_tool.py 
git status
git diff psse_tool.py 
git status
git diff psse_middleware/
git status
git add psse_middleware/
git commit -m "updated psse import "
git status
python3 main.py 
mkdir tmp
touch tmp/log_file.txt
python3 main.py 
git status
git add calculators/ analysis.py 
git commit -m "fix to ptdf calc"
git push origin dev
git status
git add calculators/
git commit -m "removed pdb"
python main.py 
python3 main.py 
git status
git 
git status
exit
git status
source ../venv/bin/activate
python3 main.py 
git status
git add calculators/ config/
git commit -m "added flags for shunts"
git status
exit
cd app/sapp_transmission_pricing_tool/src/
source ../venv/bin/activate
python3
git status
git add analysis.py config/settings.py 
git commit -m "change temp file usage"
git push origin dev
python3 main.py 
git status
git add gui/custom_multiline.py 
git commit -m "change temp file usage"
git push origin dev
git status
git add calculators/ config/ data_managers/ psse_middleware/ psse_tool.py 
git status
git commit -m "added branch charging to y matrix"
git push origin dev
python3 main.py 
git status
git diff psse_middleware/
git checkout psse_middleware/
git status
git diff calculators/
git add calculators/ analysis.py 
git commit -m "added branch charging to y matrix"
git push origin dev
python3 main.py 
git status
git add calculators/
python3 main.py 
git diff main.py 
git diff analysis.py 
git checkout main.py 
git status
git checkout analysis.py 
git status
git add calculators/
git commit -m "added branch charging to y matrix"
git push origin dev
pytho3
python3
git stasuts
git status
git diff config/settings.py 
git add config/
git commit -m "updated date string"
python3 main.py 
full_admittance_matrix_no_shunts
python3 main.py 
exit
htop
exit
git status
python3 main.py 
python3 main.py y
python3 main.py
git status
git add calculators/
git commit -m "updated calc for admittance matrix"
git push origin dev
git status
exit
caja .
git status
git add chapters/
git commit -m "updated draft"
git push origin dev
git push origin draft
git stauts
git status
git add .
git commit -m "updated draft"
git push origin draft
git status
git add .
git commit -m "updated draft"
git push origin draft
git status
git add .
git commit -m "updated draft"
git push origin draft
git status
git add .
git commit -m "updated draft"
git push origin dev
git push origin draft
git status
git add .
git commit -m "updated draft"
git push origin dev
git push origin draft
cd chapters/
rm -r *.aux
l
rm -r *.aux
git status
git diff ../main.tex 
git checkout ../main.tex 
git status
git add ../main.
git add ../main.tex 
git add .
git commit -m "updated draft"
git push origin draft
git stsatus
gits tatus
git status
git add .
git status
git commit -m "updated draft"
git push origin draft
rm -r *.aux
l
git status
git add ../
git status
git commit -m "updated draft"
git push origin draft
rm -r *.aux
git stauts
git status
git add .
git add ../library.bib 
git commit -m "updated draft"
git push origin dev
git push origin draft
git status
git add ../library.bib 
git add .
git commit -m "updated draft"
git push origin draft
exit
sudo apt update && sudo apt upgrade
snap install anbox
git status
caja .
htop
cd Downloads/
chmox +x anbox-bridge.sh 
chmod +x anbox-bridge.sh 
./anbox-bridge.sh 
./anbox-bridge.sh start
sudo ./anbox-bridge.sh start
exit
exut
exit
source ~/.venv/bin/activate
python3 x.
python3 x.py 
python3 main.py
python3 x.py 
python3 subset.py 
python3 subsetp.y 
python3 subsetpy 
python3 subset.py 
exit
rm *.aux
cd chapters/
rm *.aux
cd ..
pdflatex  -file-line-error   -interaction=nonstopmode main.tex
cd chapters/
rm *.aux
pdflatex  -file-line-error   -interaction=nonstopmode main.tex
cd ../
pdflatex  -file-line-error   -interaction=nonstopmode main.tex
cd chapters/
rm *.aux
pdflatex  -file-line-error   -interaction=nonstopmode main.tex
rm texput.log 
cd ..
rm texput.log 
pdflatex  -file-line-error   -interaction=nonstopmode main.tex
cd chapters/
rm *.aux
cd ../
pdflatex  -file-line-error   -interaction=nonstopmode main.tex
bibtex main.tex 
bibtex
bibtex --help
bibtex -help
bibtex main.aux 
pdflatex  -file-line-error   -interaction=nonstopmode main.tex
bibtex
bibtex main.aux 
bibtex
bibtex main.aux 
git status
git add .
git commit -m "updated draft"
git push origind ev
git push origind dev
git push origind draft
git push origin draft
git status
git add .
git commit -m "updated draft"
git push origin dev
git push origin draft
bibtex main.aux 
git status
git add .
git commit -m "updated draft"
git push origin draft
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf main.pdf
git status
git add .
git commit -m "updated draft"
git push origin draft
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf main.pdf
git status
git diff main.tex 
git add .
git commit -m "updated draft"
git push origin draft
git status
bibtex main.aux 
git status
git add .
git commit -m "updated draft"
git push origin draft
git status
git add .
git commit -m "updated draft"
git push origin draft
exit
sudo snap refresh
sudo snap install anbox
sudo snap install --beta anbox
sudo snap install --devmode --beta anbox
sudo apt install wget curl lzip tar unzip squashfs-tools
wget https://raw.githubusercontent.com/geeks-r-us/anbox-playstore-installer/master/install-playstore.sh
chmod +x install-playstore.sh
./install-playstore.sh
anbox.appmgr
snap stop anbox
sudo snap stop anbox
snap start anbox
sudo snap start anbox
sudo snap stop anbox
sudo snap start anbox
sudo snap stop anbox
sudo apt install android-tools-adb
sudo snap start anbox
adb
adb list
adb --help
adb devices
sudo snap start anbox
adb devices
adb stop server
adb --help
adb kill-server
adb start-server
adb devices
sudo snap stop anbox
sudo snap start anbox
adb devices
cd Downloads/
adb install hik-connect-4-25-0-0812.apk 
sudo snap stop anbox
sudo snap start anbox
sudo snap stop anbox
sudo snap start anbox
sudo snap stop anbox
sudo snap remove anbox
sudo snap refreh
sudo snap refresh
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=Fence.pdf Invoice\ Fence\ painting\ and\ privacy\ screen\ installation.pdf 
exit
htop
htop
exit
du -hcs WITS\ 2014/
exit
caja .
bibtex main.aux 
cd ..
bibtex main.aux 
git status
git add .
git commit -m "updated draft"
git push origin draft
exit
sudo apt update && sudo apt upgrade
htop
sudo snap refresh
htop
exit
ssh ztimol@hpc.uct.ac.za
python3 --help
exit
ssh ztimol@hpc.uct.ac.za
exit
ssh ztimol@hpc.uct.ac.za
exit
ssh ztimol@hpc.uct.ac.za
exit
ssh ztimol@hpc.uct.ac.za
exit
ssh ztimol@hpc.uct.ac.za
exit
alsamixer
exit
alsamixer
exit
caja .
git status
git add .
git commit -m "updated draft"
git push origin draft
git status
git diff main.tex 
git checkout main.tex 
git status
git add chapters/
git commit -m "updated draft"
git push origin draft
bibtex main.aux 
git status
git add .
git commit -m "updated draft"
git push origin draft
git status
git checkout appendices/appendix_b.tex 
git status
git add .
git commit -m "updated draft"
git push origin draft
exit
source ~/.venv/bin/activate
python3 md_noe_mix.py 
python3 md_noe_mix.py -sero 7a
python3 md_noe_dist_calc.py 
python3 md_noe_dist_calc.py -sero 7a
python3 md_noe_distances.py -sero 7a
python3 md_noe_dist_calc.py 
python3 md_noe_dist_calc.py -sero 7a
vmd -psf /home/timol/C6W/Studies/Dynamics/NAMD/Shigella/MD/Solution/7a_s_flexneri/{sero}_s_flexneri_6ru/standard/trajectories/7a_s_flexneri_6ru.psf -dcd /home/timol/C6W/Studies/Dynamics/NAMD/Shigella/MD/Solution/7a_s_flexneri/{sero}_s_flexneri_6ru/standard/trajectories/7a_s_flexneri_6ru_0-1000ns.dcd
vmd -psf /home/timol/C6W/Studies/Dynamics/NAMD/Shigella/MD/Solution/7a_s_flexneri/7a_s_flexneri_6ru/standard/trajectories/7a_s_flexneri_6ru.psf -dcd /home/timol/C6W/Studies/Dynamics/NAMD/Shigella/MD/Solution/7a_s_flexneri/7a_s_flexneri_6ru/standard/trajectories/7a_s_flexneri_6ru_0-1000ns.dcd
python3 md_noe_dist_calc.py -sero 7a
python3 md_noe_distances.py -sero 7a
c
python3 md_noe_distances.py -sero 7a
python3 md_noe_mix.py 
python3 md_noe_mix.py -sero 7a
python3 md_noe_distances.py -sero 7a
exit
sudo snap refresh
sudo apt install alsa-tools-gui
hdjackrestack
sudo apt update && sudo apt upgrade
sudo apt install pavucontrol
pavucontrol 
hdjackrestack
hdajackrestack
alsamixer
cat /proc/asound/card*/codec* | grep Codec
$ systemctl --user restart pipewire pipewire-pulse
systemctl --user restart pipewire pipewire-pulse
pavucontrol
pulseaudio -k
lsmod | grep snd_hda_intel
echo "options snd-hda-intel model=generic" | sudo tee -a /etc/modprobe.d/alsa-base.conf
echo "options snd-hda-intel model=generic"
sudo vim /etc/modprobe.d/alsa-base.conf 
sudp apt install vim
sudo apt install vim
sudo vim /etc/modprobe.d/alsa-base.conf 
exit
alsamixer
pulseaudio -k && sudo alsa force-reload
sudo vim /etc/modprobe.d/alsa-base.conf 
pulseaudio -k && sudo alsa force-reload
hdajackrestack
sudo apt remove alsa pulseaudio --purge
sudo install remove alsa pulseaudio
sudo install alsa pulseaudio
sudo apt install alsa pulseaudio
sudo apt install alsa-base pulseaudio
alsamixer
sudo apt install alsa-base pulseaudio
alsamixer
sudo apt-get install indicator-sound
sudo killall mate-panel
sudo mate-panel --reset
sudo start mate-panel
mate-panel
cat ~/.config/pulse/
mv ~/.config/pulse/ ~/.config/pulse.old
cat ~/.config/pulse/
exit
caja .
exit
sudo apt install pulseaudio-utils 
sudo apt install alsa-base alsa-utils alsa-tools
sudo apt-get install indicator-sound
gnome-volume-control-applet
sudo apt-get install indicator-sound
dconf reset -f /org/mate/panel/
sudo killall mate-panel
mate-panel
dconf reset -f /org/mate/panel/objects/indicatorappletcomplete/
/org/mate/panel/org/mate/panel/objects/
mate-panel
sudo reboot
sudo apt reinstall alsa-utils 
udo apt-get remove --purge alsa-base pulseaudio
sudo apt-get remove --purge alsa-base pulseaudio
sudo apt-get install alsa-base* indicator-sound* libcanberra-pulse* osspd* osspd-pulseaudio* pulseaudio* pulseaudio-module-bluetooth* pulseaudio-module-x11* unity-control-center* unity-control-center-signon* webaccounts-extension-common* xul-ext-webaccounts*
sudo apt-get install alsa-base* indicator-sound*
sudo apt-get install libcanberra-pulse* osspd*
sudo apt-get install osspd-pulseaudio* pulseaudio* pulseaudio-module-bluetooth*
sudo apt-get install pulseaudio-module-x11* 
sudo apt-get install pulseaudio-module-jack 
sudo apt-get --reinstall install mate-indicator-applet indicator-sound-gtk2 mate-settings-daemon-pulse mate-media-pulse
sudo apt-get --reinstall install mate-indicator-applet indicator-sound mate-settings-daemon-pulse mate-media-pulse
sudo apt-get --reinstall install mate-indicator-applet indicator-sound mate-settings-daemon-common mate-settings-daemon mate-media-common 
pulseaudio
caja .
exit
sudo apt remove mate-panel --purge && sudo apt clean 
sudo apt install ubuntu-mate-desktop
sudo killall mate-panel
htop
exit
caja .
git status
git add .
git commit -m "updated draft"
git push origin draft
exit
htop
ssh ztimol@hpc.uct.ac.za
exit
caja .
git status
git add .
git commit -m "updated draft"
git push origin draft
bibtex main.aux 
exirt
exit
vmd -psf /home/timol/C6W/Studies/Dynamics/NAMD/Shigella/MD/Solution/7a_s_flexneri/7a_s_flexneri_6ru/standard/trajectories/7a_s_flexneri_6ru.psf -pdb /home/timol/C6W/Studies/Dynamics/NAMD/Shigella/MD/Solution/7a_s_flexneri/7a_s_flexneri_6ru/standard/trajectories/7a_s_flexneri_6ru_0-1000ns.pdb
vmd -psf /home/timol/C6W/Studies/Dynamics/NAMD/Shigella/MD/Solution/7a_s_flexneri/7a_s_flexneri_6ru/standard/trajectories/7a_s_flexneri_6ru.psf -pdb /home/timol/C6W/Studies/Dynamics/NAMD/Shigella/MD/Solution/7a_s_flexneri/7a_s_flexneri_6ru/standard/trajectories/7a_s_flexneri_6ru.pdb 
git status
source ~/.venv/bin/activate
python3 md_noe_distances.py 
python3 md_noe_distances.py -sero 7a
vmd -psf /home/timol/C6W/Studies/Dynamics/NAMD/Shigella/MD/Solution/7a_s_flexneri/7a_s_flexneri_6ru/standard/trajectories/7a_s_flexneri_6ru.psf -pdb /home/timol/C6W/Studies/Dynamics/NAMD/Shigella/MD/Solution/7a_s_flexneri/7a_s_flexneri_6ru/standard/trajectories/7a_s_flexneri_6ru.pdb 
vmd -psf /home/timol/C6W/Studies/Dynamics/NAMD/Shigella/MD/Solution/7a_s_flexneri/7a_s_flexneri_6ru/standard/trajectories/7a_s_flexneri_6ru.psf -dcd /home/timol/C6W/Studies/Dynamics/NAMD/Shigella/MD/Solution/7a_s_flexneri/7a_s_flexneri_6ru/standard/trajectories/7a_s_flexneri_6ru_0-1000ns.dcd
python3 md_noe_distances.py -sero 7a_rest
python3 md_noe_mix.py -sero 7a_rest
vmd -psf /home/timol/C6W/Studies/Dynamics/NAMD/Shigella/MD/Solution/7a_s_flexneri/7a_s_flexneri_6ru/ring_restrained/trajectories/7a_s_flexneri_6ru.psf -dcd /home/timol/C6W/Studies/Dynamics/NAMD/Shigella/MD/Solution/7a_s_flexneri/7a_s_flexneri_6ru/ring_restrained/trajectories/7a_s_flexneri_6ru_ring_restrained_0-1000ns.dcd 
cd ../structure_analysis/images/
python plot.py 
python3 plot.py 
python3 plot.py
cd ../../md_distances_for_nmr/
python3 md_noe_mix_v2.py 
python3 md_noe_mix_v2.py -ser0 7a
python3 md_noe_mix_v2.py -sero 7a
python3 md_noe_mix_v2.py -sero 7a_rest
python3 md_noe_distances.py -sero 7a_rest
python3 md_noe_mix_v2.py -sero 7a_rest
python3 md_noe_distances.py -sero 7a_rest
exit
sudo apt update && sudo apt upgrade
sudo apt autoremove
mkdir h264vids
for f in *.mp4; do ffmpeg -i "$f" -map 0 -c copy -c:v libx264 h264vids/"${f%.*}.mkv"; done
l
l h264vids/Thor\ Love\ and\ Thunder.mkv 
ffmpeg -i 'Thor Love and Thunder.mp4' -vcodec h264 -acodec copy Thor.mkv
exit
vmd -psf /home/timol/C6W/Studies/Dynamics/NAMD/Shigella/MD/Solution/7a_s_flexneri/7a_s_flexneri_6ru/standard/trajectories/7a_s_flexneri_6ru.psf -dcd /home/timol/C6W/Studies/Dynamics/NAMD/Shigella/MD/Solution/7a_s_flexneri/7a_s_flexneri_6ru/standard/trajectories/7a_s_flexneri_6ru_0-1000ns.dcd
exit
source ~/.venv/bin/activate
cd ~/C6W/Studies/md_distances_for_nmr/
vmd -psf /home/timol/C6W/Studies/Dynamics/NAMD/Shigella/MD/Solution/7a_s_flexneri/7a_s_flexneri_6ru/standard/trajectories/7a_s_flexneri_6ru.psf -dcd /home/timol/C6W/Studies/Dynamics/NAMD/Shigella/MD/Solution/7a_s_flexneri/7a_s_flexneri_6ru/standard/trajectories/7a_s_flexneri_6ru_0-1000ns.dcd
python3 md_noe_distances.py -sero 7a
exit
htop
exit
vmd -psf /home/timol/C6W/Studies/Dynamics/NAMD/Shigella/MD/Solution/7a_s_flexneri/7a_s_flexneri_6ru/standard/trajectories/7a_s_flexneri_6ru.psf -dcd /home/timol/C6W/Studies/Dynamics/NAMD/Shigella/MD/Solution/7a_s_flexneri/7a_s_flexneri_6ru/standard/trajectories/7a_s_flexneri_6ru_0-1000ns.dcd
exit
source ~/.venv/bin/activate
exit
htop
exit
pdftotext small.pdf > small.txt
exit
cd ~/C6W/Studies/Dynamics/NAMD_glycam/MD/solution/7a_s_flexneri/7a_s_flexneri_1ru/trajectories/
ls
vmd -psf 7a_s_flexneri_1ru.psf -dcd 7a_s_flexneri_1ru_0-2000ns.dcd 
exit
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf main.pdf
exit
git status
caja .
git status
git add .
git commit -m "updated draft"
git push origin draft
git status
git add .
git commit -m "updated draft"
git push origin draft
git status
git add .
git commit -m "updated draft"
git push origin draft
git status
git add .
git commit -m "updated draft"
git push origin draft
git status
git add .
git commit -m "updated draft"
git push origin draft
git status
git add .
git commit -m "updated draft"
git push origin draft
git status
git add .
git commit -m "updated draft"
git push origin draft
git status
git add.
git add .
git commit -m "updated draft"
git push origin draft
git status
git add .
git commit -m "updated draft"
git push origin draft
caja .
git status
git add .
git commit -m "updated draft"
git push origin draft
exit
source ~/.venv/bin/activate
python3 md_noe_distances.py -sero 7a
python3 md_noe_distances.py -sero 7a_restr
python3 md_noe_distances.py -sero 7a_rest
python3 md_noe_distances.py -sero 7a
python3 md_noe_distances.py -sero 7a_rest
vmd -psf /home/timol/C6W/Studies/Dynamics/NAMD/Shigella/MD/Solution/7a_s_flexneri/7a_s_flexneri_6ru/ring_restrained/trajectories/7a_s_flexneri_6ru.psf -dcd /home/timol/C6W/Studies/Dynamics/NAMD/Shigella/MD/Solution/7a_s_flexneri/7a_s_flexneri_6ru/ring_restrained/trajectories/7a_s_flexneri_6ru_ring_restrained_0-1000ns.dcd 
cd ../structure_analysis/
cd 
cd ~/C6W/Studies/md_distances_for_nmr
python3 md_noe_distances.py -sero 7a_rest
cd ../structure_analysis/
python3 base.py -f config_files/7a_s_flexneri_6ru_ring_restrained.conf 
cd images/
mv *.png figs/
python3 combine_phi_psi_torsions.py 
python3 heat_map_plot.py 
cd ../../md_distances_for_nmr/
python3 md_noe_distances.py -sero 7a_rest
vmd -psf /home/timol/C6W/Studies/Dynamics/NAMD/Shigella/MD/Solution/7b_s_flexneri/7b_s_flexneri_6ru/ring_restrained/trajectories/7b_s_flexneri_6ru.psf -dcd /home/timol/C6W/Studies/Dynamics/NAMD/Shigella/MD/Solution/7b_s_flexneri/7a_s_flexneri_6ru/ring_restrained/trajectories/7b_s_flexneri_6ru_ring_restrained_0-1000ns.dcd 
vmd -psf /home/timol/C6W/Studies/Dynamics/NAMD/Shigella/MD/Solution/7b_s_flexneri/7b_s_flexneri_6ru/ring_restrained/trajectories/7b_s_flexneri_6ru.psf -dcd /home/timol/C6W/Studies/Dynamics/NAMD/Shigella/MD/Solution/7b_s_flexneri/7b_s_flexneri_6ru/ring_restrained/trajectories/7b_s_flexneri_6ru_ring_restrained_0-1000ns.dcd 
cd ../structure_analysis/
python3 base.py -f config_files/7b_s_flexneri_6ru_ring_restrained.conf 
cd images/
python3 combine_phi_psi_torsions.py 
python3 heat_map_plot.py 
python3 combine_phi_psi_torsions.py 
python3 heat_map_plot.py 
python3 plot.py 
mv *.svg figs/
python3 line_plot.py 
len(x_values)
python3 line_plot.py 
python3 cp_heat_map_plot
python3 cp_heat_map_plot.py 
cd ../../md_distances_for_nmr/
python3 md_noe_distances.py -sero 7a_rest
python3 md_noe_distances.py -sero 7b
vmd -psf /home/timol/C6W/Studies/Dynamics/NAMD/Shigella/MD/Solution/7b_s_flexneri/7a_s_flexneri_6ru/standard/trajectories/7a_s_flexneri_6ru.psf -dcd /home/timol/C6W/Studies/Dynamics/NAMD/Shigella/MD/Solution/7b_s_flexneri/7a_s_flexneri_6ru/standard/trajectories/7a_s_flexneri_6ru_0-1000ns.dcd
vmd -psf /home/timol/C6W/Studies/Dynamics/NAMD/Shigella/MD/Solution/7b_s_flexneri/7b_s_flexneri_6ru/standard/trajectories/7b_s_flexneri_6ru.psf -dcd /home/timol/C6W/Studies/Dynamics/NAMD/Shigella/MD/Solution/7b_s_flexneri/ba_s_flexneri_6ru/standard/trajectories/7b_s_flexneri_6ru_0-1000ns.dcd
vmd -psf /home/timol/C6W/Studies/Dynamics/NAMD/Shigella/MD/Solution/7b_s_flexneri/7b_s_flexneri_6ru/standard/trajectories/7b_s_flexneri_6ru.psf -dcd /home/timol/C6W/Studies/Dynamics/NAMD/Shigella/MD/Solution/7b_s_flexneri/7b_s_flexneri_6ru/standard/trajectories/7b_s_flexneri_6ru_0-1000ns.dcd
python3 md_noe_distances.py -sero 7b
vmd -psf /home/timol/C6W/Studies/Dynamics/NAMD/Shigella/MD/Solution/7b_s_flexneri/7b_s_flexneri_6ru/standard/trajectories/7b_s_flexneri_6ru.psf -dcd /home/timol/C6W/Studies/Dynamics/NAMD/Shigella/MD/Solution/7b_s_flexneri/7b_s_flexneri_6ru/standard/trajectories/7b_s_flexneri_6ru_0-1000ns.dcd
python3 md_noe_distances.py -sero 7b
cd ../structure_analysis/images/
python3 line_plot.py 
python3 heat_map_plot.py 
python3 cp_heat_map_plot.py 
exit
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf main.pdf
sudo apt update && sudo apt upgrade
pdftotext
sudo add-apt-repository ppa:jcfp/nobetas
sudo apt-get update 
sudo apt-get update & sudo apt upgrade
sudo apt upgrade
sudo apt update
source ~/.venv/bin/activate
python3
python3 main.py 
sudo apt update
python3 main.py 
sudo add-apt-repository ppa:jcfp/nobetas
python3 main.py 
python3 cp_heat_map_plot.py 
python3 main.py 
exit
sudo snap refresh
sudo apt upgrade
sudo apt update
sudo apt upgrade
ping google.com
sudo apt install libavcodec-extra ffmpeg
libwilibwidevinecdm0
htop
exit
source ~/.venv/bin/activate
python3 main.py 
exit
htop
exit
ping google.com
ping foxnews.com
sudo snap refresh
pdftotext Thesis_Draft_v1.pdf > Thesis_Draft_v1.txt
caja .
exit
sud apt update && sudo apt upgrade
sudo apt update && sudo apt upgrade
mv untitled\ folder/ Additional Material
mv untitled\ folder/ "Additional Material"
exut
exit
sudo apt update && sudo apt upgrade
gsettings set org.gnome.desktop.remote-desktop.rdp screen-share-mode extend
sudo systemctl restart NetworkManager.service
htop
eit
exit
htop
caja .
git status
git add chapters/
git commit -m "updated draft"
git push origin draft
git status
git add chapters/
git commit -m "updated draft"
git push origin draft
exit
sudo apt update && sudo apt upgrade
sudo apt-add-repository -y ppa:nickguletskii200/glxosd && sudo apt-get update && sudo apt-get install -y glxosd glxosd-libs-libsensors-support-amd64 glxosd-libs-libsensors-support-i386
sudo apt upgrade
sudo shutdown -h now
git stsatus
git status
git add chapters/
git commit -m "updated draft"
git push origin draft
exit
sudo apt update
~nmcli -f "CHAN,BARS,SIGNAL,SSID" d wifi list ifname wlx10feed21ae1d  | sort -n
nmcli -f "CHAN,BARS,SIGNAL,SSID" d wifi list ifname wlx10feed21ae1d  | sort -n
nmcli d wifi
nmcli -f "CHAN,BARS,SIGNAL,SSID" d wifi list ifname wlp1s0  | sort -n
nmcli d wifi
gitk
git status
git add main.tex chapters/
git commit -m "updated draft"
git push origin draft
git status
git add Thesis chapters/
git commit -m "updated draft"
git add Thesis.cls abstract.tex chapters/
git commit -m "updated draft"
git push origin draft
git status
exit
sudo apt install openjdk-11-jdk
java --version
sudo add-apt-repository ppa:maarten-fonville/android-studio
sudo apt update
sudo apt install android-studio -y
sudo apt remove grace
sudo apt remove jupyter
sudo apt autoremove
sudo apt remove kdenlive
sudo apt autoremove
sudo apt install android-studio -y
cd Downloads/
sudo dpkg -i watchman_ubuntu22.04_v2022.10.24.00.deb 
sudo apt -f install
rm watchman_ubuntu22.04_v2022.10.24.00.deb 
watchman --version
watchman version
npx update
npm uninstall -g react-native-cli @react-native-community/cli
sudo npm uninstall -g react-native-cli @react-native-community/cli
exit
adb devices
npx react-native run-android
cd ../
rm -r AwesomeToptalProject/
sudo rm -r AwesomeToptalProject/
exit
cd tmp/
ls
npx react-native init AwesomeProject
lsusb
echo 'SUBSYSTEM=="usb", ATTR{idVendor}=="2717", MODE="0666", GROUP="plugdev"' | sudo tee /etc/udev/rules.d/51-android-usb.rules
adb devices
adb list
adb kill-server
adb start server
adb start-server
adb devices
adb kill-server
adb start-server
adb devices
lsusb
ls
cd AwesomeProject/
npx react-native run-android
npx install
npm start
npx start
npx install
ls
rm -r node_modules/
cd ../
rm -r AwesomeProject/
create-react-native-app AwesomeToptalProject
npx install create-react-native-ap
npm install create-react-native-ap
npm install create-react-native-app
l
rm -r node_modules/
create-react-native-app AwesomeToptalProject
ls
cat package.json 
rm -r package.json 
rm -r package-lock.json 
ls
npm install -g create-react-native-app
ls
l
create-react-native-app AwesomeToptalProject
cd AwesomeToptalProject/
react-native run-android
npx react-native run-android
ls
npx install
npx updaet
npx update
npx react-native run-android
npx react-native start
create-react-native-app TempProj
npx create-react-native-app TempProj
ls
l
cd ../
l
npx create-react-native-app TempProj
cd TempProj/
npx start
npx install
ls
npx react-native run-android
npx start
npm start
exit
lsusb
adb devices
adb kill-server
adb devices
adb kill-server
lsusb
echo 'SUBSYSTEM=="usb", ATTR{idVendor}=="18d1", MODE="0666", GROUP="plugdev"' | sudo tee /etc/udev/rules.d/51-android-usb.rules
adb devices
exit
adb devices
lsusb
exit
d tmp/
ls
cd tmp/
l
rm TempProj/
rm -r TempProj/
sudo rm -r TempProj/
npx react-native init AwesomeProject
cd AwesomeProject/
npx react-native run-android
l
cd ~/.gradle/ clean
~/.gradle/ clean
npm install
ls
npx react-native run-android
ls
npm install npm@latest
npx react-native run-android
npm react-native run-android
npm install --save react-native
npx react-native run-android
sudo npm install -g npx
rm android/.gradlew clean
rm android/gradlew clean
android/gradlew clean
gradlew clean
ls
cd android/
ls
cd ../../
rm -r AwesomeProject/
npx create-react-native-app init TempProj
l
cd init/
npx react-native run-android
npx install-expo-modules
cd ios/
rm -rf Podfile
cd ../
npx install-expo-modules
mkdir ios/Podfile
npx install-expo-modules
cd ../
rm -r init/
sudo rm -r init/
npx create-react-native-app init TempProj
rm -r init/
npx create-react-native-app TempProj
l
rm -r init/ TempProj/
l
npx create-react-native-app TempProj
ls
rm -r TempProj/
exit
cd tmp/
npx create-react-native-app TempProj
ls
rm -r TempProj/
npx create-react-native-app TempProj
cd TempProj/
npm run android
cat ~/dotfiles/bashrc 
ls
npx react-native run-android
ls
cd ../
rm -r TempProj/
sudo rm -r TempProj/
npx create-react-native-app TempProj
cd TempProj/
npx react-native run-android
exit
adb devices
adb -s bf2062bb0521 reverse tcp:8081 tcp:8081
cd tmp/TempProj/
cd ../
rm -r TempProj/
sudo rm -r TempProj/
npx react-native init AwesomeProject
cd AwesomeProject/
npx react-native run-android
java --version
sudo apt install openjdk-18-jre
java --version
npx react-native run-android
exit
cd tmp/AwesomeProject/
ls
npx react-native run-android
$ANDROID_HOME/tools/bin/sdkmanager --licenses
$ANDROID_HOME
cd $ANDROID_HOME
adb devices
adb -s bf2062bb0521 reverse tcp:8081 tcp:8081
npx react-native run-android
cd ~/tmp/AwesomeProject/
npx react-native run-android
yes | sdkmanager --licenses
yes | ~/Android/Sdk/tools/bin/sdkmanager --licenses
ls ~/Android/Sdk/licenses
yes | ~/Android/Sdk/licenses/android-sdk-license --licenses
yes | ~/Android/Sdk/
npx react-native run-android
$ANDROID_HOME/tools/bin/sdkmanager --licenses
$ANDROID_HOME/Sdk/cmdline-tools/latest/bin/sdkmanager --licenses
npx react-native run-android
$ANDROID_HOME/Sdk/cmdline-tools/latest/bin/sdkmanager --licenses
exit
npx react-native run-android
exit
cd tmp/AwesomeProject/
npx react-native run-android
adb
which adb
source ~/.bashrc 
npx react-native run-android
exit
cd tmp/AwesomeProject/
npx react-native run-android
cd ../
rm -r AwesomeProject/
npx react-native init AwesomeProject
cd AwesomeProject/
npx react-native run-android
adb devices
lsusb
adb devices
npx react-native run-android
adb -s bf2062bb0521 reverse tcp:8081 tcp:8081
npx react-native run-android
npx react-native start --port 8084 --reset-cache
cd ../
sudo rm -r AwesomeProject/
npx create-react-native-app TempProj
cd TempProj/
ls
npx react-native run-android
npx install-expo-modules
npx install
npx update
npx install package.json 
npm i
npx react-native run-android
cd ../
rm -r TempProj/
sudo rm -r TempProj/
git clone eetasdemir/Trackie
git clone etasdemir/Trackie
gh repo clone etasdemir/Trackie
git repo clone etasdemir/Trackie
git clone etasdemir/Trackie
git clone https://github.com/etasdemir/Trackie.git
cd Trackie/
npm install
npx install yarn
npm install yarn
npm install -g yarn
yarn install
npx react-native run-android
adb devices
npx react-native run-android
l
npx react-native run-android
adb kill-server
adb start-server
cd tmp/Trackie/
npx react-native run-android
adb -s bf2062bb0521 reverse tcp:8081 tcp:8081
adb devices
npx react-native run-android
l /
ls /usr/lib/android-sdk/
ls /usr/lib/android-sdk/platform-tools/
exit
adb devices
lsusb
npx react-native run-android
cd tmp/Trackie/
npx react-native run-android
npx react-native start
exit
sudo snap refresh
git status
caja .
exit
nmcli -f "CHAN,BARS,SIGNAL,SSID" d wifi list ifname wlp1s0  | sort -n
nmcli
sudo snap refersh
sudo snap refresh
cp ~/Downloads/SIngle\ Contingencies.csv .
source ~/.venv/bin/activate
mkdir old
mv branch_data_v2.csv 
mv branch_data_v2.csv old/
mv branch_data.csv old/
mv Example.con old/
mv input_branch.csv old
mv out_n-* old/
mv Sasol SINGLE Contingencies.csv old/
mv "Sasol SINGLE Contingencies.csv" old/
mv "SINGLE Contingency output_v2.csv" old/
mv "SINGLE Contingency output.xlsx" old/
python3 main.py 
exit]
exit
sudo apt install rpi-imager 
sudo apt install vnc-viewer
sudo apt install vncviewer
sudo apt install vncsnapshot 
cd Downloads/
sudo dpkg -i VNC-Viewer-6.22.826-Linux-x86.deb 
exit
sudo snap refresh
sudo arp-scan -l --interface=wlan0
for ip in $(seq 1 254); do ping -c 1 192.168.1.$ip>/dev/null;      [ $? -eq 0 ] && echo "192.168.1.$ip UP" || : ; done
sudo apt-get install nm
nmap -sn 192.168.1.0/60
nmap -sn 192.168.1.0/32
nmap -sP 192.168.1.0/32
sudo apt-get install netdiscover
sudo netdiscover -r 192.168.1.0/32 -i wlan0
sudo netdiscover -r 192.168.1.1/32 -i wlan0
sudo netdiscover -r 192.168.1.1/32 -i wlp1s0
sudo netdiscover -r 192.168.1.1/24 -i wlp1s0
exit
sudo apt remove vncviewer
sudo dpkg -remove vncviwer
sudo dpkg -r vncviewer
sudo apt -r vncviewer
sudo aptitude -remove vncviewer
sudo dpkg --remove vncviewer
cd Downloads/
dpkg -r $(dpkg -f VNC-Viewer-6.22.826-Linux-x86.deb Package)
sudo dpkg -r $(dpkg -f VNC-Viewer-6.22.826-Linux-x86.deb Package)
exit
git status
git add .
git commit -m "updated draft"
git push origin draft
git status
git branch -a
git checkout -b "corrections"
git status
git add .
git commit -m "updated corrections"
git push origin corrections
exit
cd Downloads/
ssh timol@192.168.1.79
ssh timol@192.168.1.74
ssh timol@192.168.1.79
ssh pi@192.168.1.79
ssh 192.168.1.79
ssh timol@192.168.1.79
exit
ssh timol@192.168.1.79
git status
git add .
git commit -m "updated corrections"
git push origin draft
git status
git push origin corrections
exit
git status
git commit -m "updated corrections"
git add .
git commit -m "updated corrections"
git push origin corrections
exit
sudo dpkg -i net.downloadhelper.coapp-1.6.3-1_amd64.deb 
exit
sudo dpkg -i net.downloadhelper.coapp-1.6.3-1_amd64.deb 
exit
sudo ./XBian-installer 
exit
htop
bibtex main.aux exit
exit
ssh timol@192.168.0.103
exit
git status
git add .
git commit -m "updated corrections"
git push origin draft
git status
bibtex main.aux 
git status
git add .
git commit -m "updated corrections"
git push origin corrections
exit
ssh timol@192.168.0.103
ssh timol@192.168.0.104
ssh timol@192.168.0.102
ssh timol@192.168.0.103
ssh timol@192.168.0.105
ssh timol@192.168.0.103
ssh timol@192.168.0.101
ssh timol@192.168.0.106
ssh timol@192.168.0.103
ssh timol@192.168.0.104
ssh timol@192.168.0.105
ssh timol@192.168.0.106
sudo netdiscover -r 192.168.1.1/24 -i wlp1s0
sudo netdiscover -r 192.168.1.1/32 -i wlan0
nmap -sP 192.168.0.107
nmap
nmap -sP 192.168.1.0/32
nmap -sPn 192.168.1.0/32
nmap -sP 192.168.0.0/32
nmap -sP 192.168.0.100/132
nmap -sP 192.168.0.101/132
nmap -sP 192.168.0./32
nmap -sP 192.168.0.0/32
nmap -sPn 192.168.0.0/32
ssh timol@192.168.0.107
ssh timol@192.168.0.108
ssh timol@192.168.0.109
ssh timol@192.168.0.110
ssh timol@192.168.0.111
ssh timol@192.168.0.103
ssh timol@192.168.1.103
ssh timol@192.168.1.100
ssh timol@192.168.0.100
ls
ssh timol@192.168.0.100
~
exit
ssh timol@192.168.0.103
ssh timol@192.168.1.103
ssh timol@192.168.0.100
ssh timol@192.168.1.100
ssh timol@192.168.0.100
exit
sudo snap refresh
exit
ssh timol@192.168.1.103
ssh timol@192.168..102
ssh timol@192.168..101
ssh timol@192.168.0.100
ssh timol@192.168.0.101
ssh timol@192.168.0.102
ssh timol@192.168.0.104
ssh timol@192.168.0.105
ssh timol@192.168.0.106
ssh timol@192.168.0.107
ssh timol@192.168.0.108
ssh timol@192.168.0.109
ssh timol@192.168.0.110
exit
ls -lha
sudo chown -R timol .
lsbkh
lskh
lsblk
sudo mount -o remount,uid=1000,gid=1000,rw /dev/sda1
ls -lha
mkdir Shared
ls
exit
cd ~/
sudo ntfsfix /dev/sda1 
exit
mkdir Shared
exit
cd ..
bibtex main.aux 
git status
git add .
git commit -m "updated corrections"
git push origin corrections
git status
git commit -m "updated corrections"
git add .
git commit -m "updated corrections"
git push origin corrections
git status
git add .
git commit -m "updated corrections"
git push origin corrections
exit
ssh timol@192.168.0.103
reset
ssh timol@192.168.0.103
reset
ssh timol@192.168.0.103
exit
sudo killall caja
sudo kill all caja
sudo shutdown -h now
exit
htop
exit
ssh timol@192.168.0.103
htop
resset
reset
ssh timol@192.168.0.103
reset
ssh ztimol@hpc.uct.ac.za
ssh 192.168.1.79
ssh 192.168.1.103
ssh 192.168.0.103
ping 192.168.0.103
ssh 192.168.0.103
ssh timol@192.168.0.103
exit
cd Pictures/
ls
cd /media/
ls
cd timol/
ls
exit
sudo killall caja
exit
sudo snap install anbox
sudo snap install --devmode --beta anbox
sudo apt install wget curl lzip tar unzip squashfs-tools
sudo apt autoremove
cd Downloads/
wget https://raw.githubusercontent.com/geeks-r-us/anbox-playstore-installer/master/install-playstore.sh
chmod +x ./install-playstore.sh 
./install-playstore.sh 
anbox.appmgr
sudo /snap/anbox/current/bin/anbox-bridge.sh start
sudo /snap/anbox/current/bin/anbox-bridge.sh restart
anbox.appmgr
anbox.appmgr restart
sudo kilalla caja
sudo killall caja
exit
htop
exit
caja .
git status
git add .
git commit -m "updated corrections"
git push origin draft
git status
git add .
git commit -m "updated corrections"
git push origin corrections
git status
git add .
git commit -m "updated corrections"
git push origin draft
git tatus
git status
git add .
git commit -m "updated corrections"
git push origin corrections
bibtex main.aux 
vmd
bibtex main.aux 
git status
git add .
git commit -m "updated corrections"
git push origin corrections
git status
git add .
git commit -m "updated corrections"
git push origin corrections
exit
cd Pictures/
ls
rm -r misc/
cd /media/timol/7EB4A671B4A62C19/
df -h
ls
cp -rv Shared/TV_Shows/Andor/ ~/Pictures/
rm -r Shared/TV_Shows/Andor/
ls
df -h
cp -rv ~/Pictures/NMR/ . 
rm -r ~/Pictures/NMR/
ls
df -h
l
cp -rv Shared/Movies/Armies.mkv ~/Pictures/
rm -r Shared/Movies/Armies.mkv 
df -h
cp -r Shared/TV_Shows/House\ of\ the\ Dragon/ ~/Pictures/
rm -r Shared/TV_Shows/House\ of\ the\ Dragon/
df -h
cd Shared/Movies/
ls
cp -rv Hobbit.mkv ~/Pictures/
rm -r Hobbit.mkv 
cp -rv Smaug.mkv ~/Pictures/
rm -r Smaug.mkv 
df -h
exit
df -h
exit
ssh timol@192.168.0.103
exit
lsblk -o NAME,FSTYPE,UUI
lsblk -o NAME,FSTYPE,UUID
exit
cd /media/timol/157B8914532085B8/Shared/TV_Shows/
l
cp -rv ~/Pictures/Andor/ .
cp -rv ~/Pictures/House\ of\ the\ Dragon/ .
sudo snap refresh
sudo apt update && sudo apt upgrade
sudo killall caja
cd /media/
ls
cd timol/
ls
cd /media/timol/157B8914532085B8/
ls
cd Shared/TV_Shows/House\ of\ the\ Dragon/
ls
ls -lha
rsync -ah --progress /home/timol/Pictures/House\ of\ the\ Dragon/House.of.the.Dragon.S01E01.Episode.1.1080p.HMAX.WEB-DL.DDP5.1.Atmos.H.264-SMURF.mkv . 
rsync -ah --progress /home/timol/Pictures/House\ of\ the\ Dragon/House.of.the.Dragon.S01E02.Episode.1.1080p.HMAX.WEB-DL.DDP5.1.Atmos.H.264-SMURF.mkv . 
rsync -ah --progress /home/timol/Pictures/House\ of\ the\ Dragon/House.of.the.Dragon.S01E02.Episode.2.1080p.HMAX.WEB-DL.DDP5.1.Atmos.H.264-SMURF.mkv  . 
rsync -ah --progress /home/timol/Pictures/House\ of\ the\ Dragon/House.of.the.Dragon.S01E07.Episode.2.1080p.HMAX.WEB-DL.DDP5.1.Atmos.H.264-SMURF.mkv  . 
rsync -ah --progress /home/timol/Pictures/House\ of\ the\ Dragon/House.of.the.Dragon.S01E07.Driftmark.1080p.HMAX.WEB-DL.DDP5.1.Atmos.H.264-SMURF.mkv   . 
rsync -ah --progress /home/timol/Pictures/House\ of\ the\ Dragon/House.of.the.Dragon.S01E08.The.Lord.of.the.Tides.1080p.HMAX.WEB-DL.DDP5.1.Atmos.H.264-SMURF.mkv . 
l
rsync -ah --progress /home/timol/Pictures/House\ of\ the\ Dragon/House.of.the.Dragon.S01E06.The.Princess.and.the.Queen.1080p.HMAX.WEB-DL.DDP5.1.Atmos.H.264-SMURF.mkv  . 
rsync -ah --progress /home/timol/Pictures/House\ of\ the\ Dragon/House.of.the.Dragon.S01E09.The.Green.Council.1080p.HMAX.WEB-DL.DDP5.1.Atmos.H.264-SMURF.mkv .
l
exitr
exit
cd /media/timol/157B8914532085B8/
ls
cd Shared/
ls
cd Movies/
rsync -ah --progress /home/timol/Pictures/*.mkv .
exit
rm-r *.mkv
rm -r *.mkv
exit
cd /media/timol/7EB4A671B4A62C19/
ls
cd Shared/
ls
cd TV_Shows/
ls
ls Rick\ and\ Morty/
rm -r Rick\ and\ Morty/
ls
du -hcs .
df -h
cd ../Movies/
ls
du -hcs .
cd ../TV_Shows/
rsync -ah --progress The\ Lord\ of\ the\ R* /home/timol/Pictures/
ls
rm -r The\ Lord\ of\ the\ R*
cd ../Movies/
ls
du -hcs The.*
exit
cd /media/timol/157B8914532085B8/
ls 
cd Shared/
df -h
rsync -ah --progress /home/timol/Downloads/The.Lord.of.the.Rings.The.Rings.of.Power.S01.2160p.AMZN.WEB-DL.x265.8bit.SDR.DDP5.1.Atmos.x265-MIXED\[rartv\]/ .
rsync -ah --progress /home/timol/Pictures/The\ Lord\ of\ the\ Rings\ -\ The\ Rings\ of\ Power\ 1080p/ .
exit
ssh timol@192.168.0.103
sudo reboot
ssh timol@192.168.0.103
exit
git status
git diff
git add .
git commit -m "updated corrections"
git push origin corrections
exit
ssh timol@192.168.0.103
ping 192.168.0.103
htop
exit
cp ~/Downloads/DECEMBER-ROSTER-2022-VERSION-1B_221123_104344.txt .
source ~/.venv/bin/activate
python3 dinat_calendar.py 
monthly_roster_df
python3 dinat_calendar.py 
python --version
python3 --version
python3 dinat_calendar.py 
git status
exit
git diff
exit
bibtex main.aux 
cd ../
cd chapters/
l
cd ../
bibtex main.aux 
git status
git add .
git commit -m "updated corrections"
git push origin corrections
bibtex main.aux 
git status
git add.
git commit -m "corrections"
git status
git add .
git commit -m "corrections"
git push origin corrections
git status
git add .
git commit -m "corrections"
git push origin corrections
bibtex main.aux 
l
bibtex main.aux 
git status
git add .
git commit -m "corrections"
git push origin corrections
git status
git add .
git commit -m "corrections"
git push origin corrections
bibtex main.aux 
git status
git add .
git commit -m "corrections"
git push origin corrections
git status
git diff
git status
git add .
git commit -m "corrections"
git push origin corrections
bibtex main.aux 
git status
git add .
git commit -m "corrections"
git push origin corrections
git status
git add .
git commit -m "corrections"
git push origin corrections
bibtex main.aux 
command dirs
bibtex main.aux 
git status
git add .
git commit -m "corrections"
git push origin draft
git push origin corrections
git status
git diff
git status
git add .
git commit -m "corrections"
git push origin corrections
git status
git add .
git commit -m "corrections"
git push origin corrections
git status
git diff
gitk
git status
git add .
git commit -m "corrections"
git push origin corrections
bibtex main.aux 
bibtex main.aux
git stastus
git status
git add .
git commit -m "corrections"
git push origin corrections
bibtex main.aux
git status
git add .
git commit -m "corrections"
git push origin draft
git push origin corrections
bibtex main.aux
git status
git dff
git diff
bibtex main.aux
git status
git add .
git commit -m "corrections"
git push origin corrections
git status
git add .
git commit -m "corrections"
git push origin corrections
bibtex main.aux
exit
sudo apt install silversearcher-ag
sudo apt update && sudo apt upgrade
bibtex main.aux
ls -lha
ls
ls -lha
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf main.pdf
ls -lha
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf main.pdf
exit
docker ps
docker images
docker -s 0a
docker -s -a
docker ps -a
docker images
exit
ocker run -d -v /home/timol/work/esp/sapp_transmission_study/sapp_transmission_pricing_app/app:/home/app/ -it ubuntu:20.04
cd C6W/Studies/structure_analysis/RING-master/
ls
docker run -d -v ./:/home/app/ -it ubuntu:20.04
docker run -d -v /home/timol/C6W/Studies/structure_analysis/RING-master/:/home/app/ -it ubuntu:20.04
docker ps -a
docker ps
docker exec -it d52ac39640a8 bash
exit
docker exec -it d52ac39640a8 bash
exit
htop
docker pull ubuntu18.04
docker images
docker pull ubuntu:18.04
docker run -d -v /home/timol/C6W/Studies/structure_analysis/RING-master/:/home/app/ -it ubuntu:18.04
docker ps
docker exec -it e9de79b75d60 bash
ssh -X ztimol@hpc.uct.ac.za
ssh -Y ztimol@hpc.uct.ac.za
ssh -X ztimol@hpc.uct.ac.za
export DISPLAY=197.239.184.109:0.0
ssh -X ztimol@hpc.uct.ac.za
cat /etc/ssh/sshd_config
ssh -v -X ztimol@hpc.uct.ac.za
export DISPLAY=:10
ssh -v -X ztimol@hpc.uct.ac.za
export DISPLAY=:0.0
ssh -v -X ztimol@hpc.uct.ac.za
exit
source ~/.venv/bin/activate
git status
python3 base.py -f config_files/aDGlc13_aDGlc14_bDGlcNAc.conf 
cd RING-master/
ls
python3 Ring_Analysis.py
deactivate
cd ../../
vmd -pdb ~/C6W/Studies/Dynamics/NAMD/Shigella/MD/Solution/7a_s_flexneri/7a_s_flexneri_1ru/trajectories/7a_s_flexneri_1ru.pdb -psf ~/C6W/Studies/Dynamics/NAMD/Shigella/MD/Solution/7a_s_flexneri/7a_s_flexneri_1ru/trajectories/7a_s_flexneri_1ru.psf
vmd -pdb ~/C6W/Studies/Dynamics/NAMD/Shigella/MD/Solution/7a_s_flexneri/7a_s_flexneri_6ru/trajectories/7a_s_flexneri_6ru.pdb -psf ~/C6W/Studies/Dynamics/NAMD/Shigella/MD/Solution/7a_s_flexneri/7a_s_flexneri_6ru/trajectories/7a_s_flexneri_6ru.psf
vmd -pdb ~/C6W/Studies/Dynamics/NAMD/Shigella/MD/Solution/7a_s_flexneri/7a_s_flexneri_6ru/standard/trajectories/7a_s_flexneri_6ru.pdb -psf ~/C6W/Studies/Dynamics/NAMD/Shigella/MD/Solution/7a_s_flexneri/7a_s_flexneri_6ru/standard/trajectories/7a_s_flexneri_6ru.psf
cd ~/tmp/
ls
cd carb
mkdir carb
cd carb/
CarbBuilder2.exe -i "aLRha12aLRha13aLRha13[aDGlc14baGlc]bDGlcNAc12aLRha12aLRha13aLRha13[aDGlc14baGlc]bDGlcNAc" -PSF
CarbBuilder2.exe -i "aLRha12aLRha13aLRha13[aDGlc14aDGlc]bDGlcNAc12aLRha12aLRha13aLRha13[aDGlc14aDGlc]bDGlcNAc" -PSF
CarbBuilder2.exe -i "aLRha12aLRha13aLRha13" -PSF
CarbBuilder2.exe -i "aLRha12aLRha13aLRha" -PSF
CarbBuilder2.exe -i "aLRha12aLRha1->3aLRha1->3[aDGlc14aDGlc]bDGlcNAc1->2aLRha1->2aLRha1->3aLRha1->3[aDGlc1->4aDGlc]bDGlcNAc" -PSF
CarbBuilder2.exe -h
CarbBuilder2.exe -i "aLRha(1->2)aLRha(1->3)aLRha1->3[aDGlc(1->4)aDGlc]bDGlcNAc(1->2)aLRha(1->2)aLRha(1->3)aLRha1->3[aDGlc(1->4)aDGlc]bDGlcNAc" -PSF
CarbBuilder2.exe -i "aLRha(1->2)aLRha(1->3)aLRha1->3[aDGlc(1->2)aDGlc(1->4)]bDGlcNAc(1->2)aLRha(1->2)aLRha(1->3)aLRha1->3[aDGlc(1->2)aDGlc(1->2)]bDGlcNAc" -PSF
CarbBuilder2.exe -i "aLRha(1->2)aLRha(1->3)aLRha(1->3)[aDGlc(1->2)aDGlc(1->4)]bDGlcNAc" -PSF
CarbBuilder2.exe -i "aLRha(1->2)aLRha(1->3)aLRha(1->3)[aDGlc(1->2)aDGlc(1->4)]bDGlcNAc(1->2)aLRha(1->2)aLRha(1->3)aLRha(1->3)[aDGlc(1->2)aDGlc(1->4)]bDGlcNAc" -PSF" -PSF
CarbBuilder2.exe -i "aLRha(1->2)aLRha(1->3)aLRha(1->3)[aDGlc(1->2)aDGlc(1->4)]bDGlcNAc(1->2)aLRha(1->2)aLRha(1->3)aLRha(1->3)[aDGlc(1->2)aDGlc(1->4)]bDGlcNAc" -PSF
CarbBuilder2.exe -i "bDGlcNAc(1->2)aLRha(1->2)aLRha(1->3)aLRha(1->3)[aDGlc(1->2)aDGlc(1->4)]bDGlcNAc(1->2)aLRha(1->2)aLRha(1->3)aLRha(1->3)[aDGlc(1->2)aDGlc(1->4)]bDGlcNAc" -PSF
CarbBuilder2.exe -i "bDGlcNAc(1->2)aLRha(1->2)aLRha(1->3)aLRha(1->3)[aDGlc(1->2)aDGlc(1->4)]bDGlcNAc(1->2)aLRha" -PSF
l
vmd output.pdb 
CarbBuilder2.exe -h
CarbBuilder2.exe -i "bDGlcNAc(1->2)aLRha(1->2)aLRha(1->3)aLRha(1->3)[aDGlc(1->2)aDGlc(1->4)]bDGlcNAc(1->2)aLRha" -all -PSF
vmd output.pdb 
CarbBuilder2.exe -i "bDGlcNAc(1->2)aLRha(1->2)aLRha(1->3)aLRha(1->3)[aDGlc(1->2)aDGlc(1->4)]bDGlcNAc(1->2)aLRha" -all -PSF
vmd output.pdb 
vmd -pdb ~/C6W/Studies/Dynamics/NAMD/Shigella/MD/Solution/7a_s_flexneri/7a_s_flexneri_6ru/standard/trajectories/7a_s_flexneri_6ru.pdb -psf ~/C6W/Studies/Dynamics/NAMD/Shigella/MD/Solution/7a_s_flexneri/7a_s_flexneri_6ru/standard/trajectories/7a_s_flexneri_6ru.psf
exit
l
vmd
exit
cd ~/C6W/Studies/Dynamics/NAMD/Shigella/MD/Solution/7a_s_flexneri/7a_s_flexneri_6ru/standard/trajectories/
vmd -psf /home/timol/C6W/Studies/Dynamics/NAMD/Shigella/MD/Solution/7a_s_flexneri/7a_s_flexneri_6ru/standard/trajectories/7a_s_flexneri_6ru.psf -dcd /home/timol/C6W/Studies/Dynamics/NAMD/Shigella/MD/Solution/7b_s_flexneri/7a_s_flexneri_6ru/standard/trajectories/7a_s_flexneri_6ru_0-1000ns.dcd
vmd -psf /home/timol/C6W/Studies/Dynamics/NAMD/Shigella/MD/Solution/7a_s_flexneri/7a_s_flexneri_6ru/standard/trajectories/7a_s_flexneri_6ru.psf -dcd /home/timol/C6W/Studies/Dynamics/NAMD/Shigella/MD/Solution/7a_s_flexneri/7a_s_flexneri_6ru/standard/trajectories/7a_s_flexneri_6ru_0-1000ns.dcd
cd ../analysis/clusters/
vmd -pdb frame39446.pdb 
vmd -psf /home/timol/C6W/Studies/Dynamics/NAMD/Shigella/MD/Solution/7a_s_flexneri/7a_s_flexneri_6ru/standard/trajectories/7a_s_flexneri_6ru.psf -dcd /home/timol/C6W/Studies/Dynamics/NAMD/Shigella/MD/Solution/7a_s_flexneri/7a_s_flexneri_6ru/standard/trajectories/7a_s_flexneri_6ru_0-1000ns.dcd
ls
mv frame39446.pdb frame34150.pdb
vmd -pdb frame34150.pdb 
l
rm frame34150.pdb 
vmd -psf /home/timol/C6W/Studies/Dynamics/NAMD/Shigella/MD/Solution/7a_s_flexneri/7a_s_flexneri_6ru/standard/trajectories/7a_s_flexneri_6ru.psf -dcd /home/timol/C6W/Studies/Dynamics/NAMD/Shigella/MD/Solution/7a_s_flexneri/7a_s_flexneri_6ru/standard/trajectories/7a_s_flexneri_6ru_0-1000ns.dcd
exit
git status
cd ..
git status
git add .
git commit -m "correction"
git push origin corrections
git status
git add .
git commit -m "correction"
git push origin corrections
git status
git add .
git commit -m "correction"
git push origin corrections
git status
git add .
git commit -m "correction"
git push origin corrections
bibtex main.aux
git status
git add .
git commit -m "correction"
git push origin corrections
git status
bibtex main.aux
git status
git add .
git commit -m "correction"
git push origin corrections
exit
source ~/.venv/bin/activate
python3 group_pucker_data.py 
cd ~/C6W/Studies/Dynamics/NAMD/Shigella/MD/Solution/7a_s_flexneri/7a_s_flexneri_6ru/standard/analysis/clusters/
2518/36000
python3 
cd ../../
cd ../../../7b_s_flexneri/7b_s_flexneri_6ru/standard/analysis/clusters/
l
cd ../../trajectories/
vmd -psf 7b_s_flexneri_6ru.psf -dcd 7b_s_flexneri_6ru_0-1000ns.dcd
python3
vmd -psf 7b_s_flexneri_6ru.psf -dcd 7b_s_flexneri_6ru_0-1000ns.dcd
python3
python3 
exit
snap remove anbox
exit
it
ssh -X ztimol@hpc.uct.ac.za
exit
caja .
bibtex main.aux
git status
git add .
git commit -m "correction"
git push origin corrections
git status
git add .
git commit -m "correction"
git push origin corrections
git commit -m "corrections"
git status
git commit -m "updated corrections"
exit
cd tmp/carb/
htop
CarbBuilder2.exe -i "->2)aLRha(1->2)aLRha(1->3)aLRha(1->3)[aDGlc(1->2)aDGlc(1->4)]bDGlcNAc(1->" -r 6 -all
reset
vmd -pdb output.pdb 
CarbBuilder2.exe -i "->2)aLRha(1->2)aLRha(1->3)aLRha(1->3)[aDGlc(1->2)aDGlc(1->4)]bDGlcNAc(1->" -r 6 -all
cd ~/C6W/Studies/Dynamics/NAMD/Shigella/MD/Solution/7a_s_flexneri/7a_s_flexneri_6ru/standard/trajectories/
vmd -psf /home/timol/C6W/Studies/Dynamics/NAMD/Shigella/MD/Solution/7a_s_flexneri/7a_s_flexneri_6ru/standard/trajectories/7a_s_flexneri_6ru.psf -dcd /home/timol/C6W/Studies/Dynamics/NAMD/Shigella/MD/Solution/7a_s_flexneri/7a_s_flexneri_6ru/standard/trajectories/7a_s_flexneri_6ru_0-1000ns.dcd
exit
sudo apt update && sudo apt upgrade
sudo snap refresh

nmcli
exit
ssh ztimol@hpc.uct.ac.za

arbBuilder2.exe -h
CarbBuilder2.exe -h
reset
ssh -X ztimol@hpc.uct.ac.za
ssh ztimol@hpc.uct.ac.za
git status
git diff chapter_6.tex 
git status
git add .
git commit -m "updated corrections"
git push origin corrections
git status
git add .
git commit -m "updated corrections"
git push origin corrections
git status
exit
ssh ztimol@hpc.uct.ac.za
exit
ssh ztimol@hpc.uct.ac.za
exit
pdftotext main.pdf main.txt
wc -w main.txt 
bibtex main.aux
git status
git add .
git commit -m "updated corrections"
git push origin corrections
git status
git add .
git commit -m "updated corrections"
git push origin correction
git push origin corrections
git status
git add .
git commit -m "updated corrections"
git push origin corrections
bibtex main.aux
exit
bibtex main.aux
git status
git add .
git commit -m "updated corrections"
git push origin corrections
bibtex main.aux
git push origin corrections
exit
vmd -psf /home/timol/C6W/Studies/Dynamics/NAMD/Shigella/MD/Solution/7a_s_flexneri/7a_s_flexneri_6ru/standard/trajectories/7a_s_flexneri_6ru.psf -dcd /home/timol/C6W/Studies/Dynamics/NAMD/Shigella/MD/Solution/7a_s_flexneri/7a_s_flexneri_6ru/standard/trajectories/7a_s_flexneri_6ru_0-1000ns.dcd
exit
sudo snap refresh
nmcli
bibtex main.aux
Warning--I didn't find a database entry for "Liu2019"


bibtex main.aux
git status
git diff rsc.bst 
bibtex main.aux
git status
git add .
git commit -m "updated corrections"
git push origin corrections
git status
git add .
git commit -m "updated corrections"
git push origin corrections
bibtex main.aux
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf main.pdf
exit
sudo systemctl restart NetworkManager.service
htop
bibtex main.aux
git status
git add .
git commit -m "updated corrections"
git push origin corrections
exit
git status
git add .
git commit -m "updated corrections"
git push origin corrections
exit
sudo snap refresh
sudo systemctl restart networking.service 
lshw -C network 
sudo netdiscover -r 192.168.1.1/32 -i wlan0
nmcli
nmap -sPn 192.168.0.0/32
exit
git status
git add .
git commit -m "updated corrections"
git push origin corrections
exit
cd C6W/Studies/Dynamics/NAMD/Shigella/MD/Solution/y_s_flexneri/y_flexneri_6RU/trajectories/
ls
vmd -psf y_s_flexneri_6ru.psf -dcd y_s_flexneri_6ru_0-2000ns.dcd 
exit
bibtex main.aux
cd ../
bibtex main.aux
git status
git add .
git commit -m "updated corrections"
git push origin corrections
bibtex main.aux
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf main.pdf
exit
ssh ztimol@hpc.uct.ac.za
sudo snap refesh
sudo snap refresh
git status
git add .
git commit -m "updated corrections"
git push origin corrections
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf main.pdf
pdftotext small.pdf main.txt
pdftotext Thesis_Draft_v4.pdf main.txt
htop
exit
htop
exit
cd /home/timol/C6W/Writeup/latex
git diff
reset
git diff
git add .
git commit -m "updated corrections"
git push origin corrections
exit
ssh pi@192.168.0.101
ping 192.168.0.101
exit
cd Downloads/
cp ~/studies/applications/med_school/ZT-ID.pdf 
cp ~/studies/applications/med_school/ZT-ID.pdf .
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=zt_id.pdf ZT-ID.pdf 
exit
ssh pi@192.168.0.101
ssh pi@192.168.0.100
ssh timol@192.168.0.100
exit
cd tmp/
cd torrent
mkdir torrent
cd torrent/
git clone https://github.com/Bercik1337/rt-auto-install.git
ssh pi@192.168.0.100
ssh timol@192.168.0.100
ping 192.168.0.100
ssh timol@192.168.0.100
ping 192.168.0.100
ssh timol@192.168.0.100
ping 192.168.0.100
ssh timol@192.168.0.100
exit
ssh timol@192.168.0.100
ssh timol@192.168.0.100
exit
tmux -d echo yellow
sudo apt install tmix
sudo apt install tmux
tmux -d echo yellow
tmux echo yellow
tmux -c echo yellow
tmux -c "echo yellow"
tmux ls
tmux new-session -d -c "echo yellow"
tmix ls
tmux ls
tmux a -t 1
tmux a -t 0
tmux ls
tmux new-session -c "echo yellow"
exit
cd ~/tmp/torrent/
git clone https://github.com/autodl-community/autodl-irssi.git
cd autodl-irssi/
git status
git checkout 6bffcb1d3fd0a25dcba9100a6bbbc6cb8de7af29
git fetch origin
git checkout 6bffcb1d3fd0a25dcba9100a6bbbc6cb8de7af29
git branch -a
git log
git status
git branch -a
git status
git checkout 6bffcb1d3fd0a25dcba9100a6bbbc6cb8de7af29
cd ../
git clone https://github.com/Novik/ruTorrent.git
cd ruTorrent/
git status
git checkout 6bffcb1d3fd0a25dcba9100a6bbbc6cb8de7af29
cd ../
ls
mv ruTorrent/ rutorrent
git status
cd rutorrent/
git status
git checkout master
git status
git log
git status
git checkout 6bffcb1d3fd0a25dcba9100a6bbbc6cb8de7af29
exit
source ~/.venv/bin/activate
cd ../custom_scripts/
python3 energies_from_pmf.py 
exit
ssh timol@192.168.0.100
reset
ssh timol@192.168.0.100
exit
vmd -psf 1_noWAT.psf -dcd aDGlc13_aDGlc14_bDGlcNAc_glycam_0-4000ns.dcd 
exit
git status
cd ../
git add .
git commit -m "updated corrections"
git push origin corrections
git status
git diff
pwd
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf main.pdf
pdftotext small.pdf main.txt
pdftotext main.pdf main.txt
chmod +x pdf2pdfa.sh 
./pdf2pdfa.sh small.pdf 
git status
rm pdf2pdfa.sh 
git add .
git commit -m "updated corrections"
git push origin corrections
git stauts
git status
git add .
git commit -m "updated corrections"
git push origin corrections
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf main.pdf
git status
git add .
git commit -m "updated corrections"
git push origin corrections
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf main.pdf
exit
source ~/.venv/bin/activate
exit
ssh timol@192.168.0.100
exit
sudo apt remove obs-studio 
sudo apt install simplescreenrecorder
sudo apt update && sudo apt uograde
sudo apt upgrade
sudo apt autoremove
sudo chown -R timol .
ls -ls
exit
ssh timol@192.168.0.100
tmux ls
tmux a -t 0
tmux a -t 1
tmux ls
ssh ztimol@hpc.uct.ac.za
ssh timol@192.168.0.100
htio
htop
ssh timol@192.168.0.100
ssh timol@192.168.0.105
ssh timol@192.168.0.100
ssh timol@192.168.0.101
ssh timol@192.168.0.105
ssh timol@192.168.0.100
ssh timol@192.168.0.105
ssh timol@192.168.0.100
reset
exit
pdftotext Thesis_Draft_v4.pdf main.txt
git status
rm Thesis_Draft_v4.pdf.old 
git status
git add .
git commit -m "updated corrections"
git push origin corrections
pdftotext main.pdf main.txt
git status
git add .
git commit -m "updated corrections"
git push origin corrections
git checkout draft
git pull origin corrections
git push origin draft
git checkout corrections
git status
git add .
git commit -m "updated corrections"
git push origin draft
git status
git add .
git commit -m "updated corrections"
git push origin draft
exit
sudo apt install gparted
sudo snap refresh
ssh timol@192.168.0.100
reset
ssh timol@192.168.0.100
reset
exit
ssh timol@192.168.0.100
exit
ssh timol@192.168.0.100
exit
ssh timol@192.168.0.100
df -h
ssh timol@192.168.0.100
exit
ssh timol@192.168.0.100
exit
ssh timol@192.168.0.100
xit
exit
ssh timol@192.168.0.100
exit
ssh timol@192.168.0.100
reset
ssh timol@192.168.0.100
ssh timol@192.168.0.101
ssh timol@192.168.0.102
ssh timol@192.168.0.103
ssh timol@192.168.0.100
ssh timol@192.168.0.105
ssh timol@192.168.0.106
ssh timol@192.168.0.103
ssh timol@192.168.0.100
ssh timol@192.168.0.107
ssh timol@192.168.0.100
reset
ssh timol@192.168.0.100
exit
ssh timol@192.168.0.100
exit
ssh timol@192.168.0.100
ssh timol@192.168.0.101
ssh timol@192.168.0.102
git status
git add .
git commit -m "updated corrections"
git push origin draft
git status
git add .
git commit -m "updated corrections"
git push origin draft
git push origin corrections
git status
git add .
git commit -m "updated corrections"
git push origin corrections
git status
git diff chapters/chapter_2.tex 
git status
git add .
git commit -m "updated corrections"
git push origin corrections
git status
git checkout .
git status
git diff
git status
git add .
git commit -m "updated corrections"
git push origin corrections
git status
git add .
git commit -m "updated corrections"
git push origin corrections
git status
git add .
git commit -m "updated corrections"
git push origin corrections
git status
git add .
git commit -m "updated corrections"
git push origin corrections
git status
git checkout .
git status
git add .
git commit -m "updated corrections"
git push origin corrections
git status
git add .
git commit -m "updated corrections"
git push origin corrections
exit
sudo systemctl networkmanager.restart
sudo systemctl restart networkmanager
sudo systemctl restart networking.service 
ssh timol@192.168.0.102
exit
ssh timol@192.168.0.102
exit
ssh timol@192.168.0.102
ssh timol@192.168.0.100
ssh timol@192.168.0.102
ssh timol@192.168.0.103
ssh timol@192.168.0.104
ssh timol@192.168.0.105
ssh timol@192.168.0.102
ssh timol@192.168.0.104
ssh timol@192.168.0.106
ssh timol@192.168.0.100
ssh timol@192.168.0.102
exit
cd ../
bibtex main.aux
CarbBuilder2.exe -h
l
bibtex main.aux
git status
git add .
git commit -m "updated corrections"
git push origin corrections
bibtex main.aux
git status
git ad d.
git add .
git commit -m "updated corrections"
git push origin corrections
bibtex main.aux
git status 
git add .
git commit -m "updated corrections"
git push origin corrections
git status
git add .
git commit -m "updated corrections"
git push origin corrections
git staus
git status
git add .
git commit -m "updated corrections"
git push origin corrections
exit
sudo snap refresh
git status
git add .
git commit -m "updated corrections"
git push origin corrections
git status
git add .
git commit -m "updated corrections"
git status
git add .
git commit -m "updated corrections"
git push origin corrections
exit
cd tmp/
ls
ls -lha
wget https://ap-euw-dev-dpuxmob.azurewebsites.net/
emacs -nw index.html 
exit
ssh timol@192.168.0.102
ssh timol@192.168.0.100
exit
bibtex main.aux
git status
git add .
git commit -m "updated corrections"
git push origin corrections
bibtex main.aux
git status
git add .
git commit -m "updated corrections"
git push origin corrections
git status
git add .
git commit -m "updated corrections"
git push origin corrections
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf main.pdf
git status
git add .
git commit -m "updated corrections"
git push origin corrections
git status
git add .
git commit -m "updated corrections"
git push origin corrections
gits tatus
git status
git add .
git commit -m "updated corrections"
git push origin corrections
exit
ssh timol@192.168.0.100
sudo systemctl restart networking.service 
ssh timol@192.168.0.100
exit
ssh timol@192.168.0.100
exit

ssh timol@192.168.0.100
exit
ssh timol@192.168.0.100
exit
ssh timol@192.168.0.100
reset
ssh timol@192.168.0.100
fds
ssh timol@192.168.0.100
exit
ssh timol@192.168.0.100
exit
ssh timol@192.168.0.100
xit
exir
exit
ssh timol@192.168.0.100
exit
ssh timol@192.168.0.100
./mendeley.AppImage -appimage-extract
./mendeley-reference-manager-2.83.0-x86_64.AppImage --appimage-portable-home
./mendeley-reference-manager-2.83.0-x86_64.AppImage --appimage-portable-config
exit
ssh timol@192.168.0.100
exit
ssh timol@192.168.0.100
exit
htop
exit
git status
git add .
git commit -m "updated corrections"
git push origin corrections
caja .
git status
git add .
git commit -m "updated corrections"
git push origin corrections
git status
git add .
git commit -m "updated corrections"
git push origin corrections
bibtex main.aux
git stauts
git status
git add .
git commit -m "updated corrections"
git push origin corrections
git status
git add .
git commit -m "updated corrections"
git push origin corrections
git status
git add .
git commit -m "updated corrections"
git push origin corrections
bibtex main.aux
git status
git add .
git commit -m "updated corrections"
git push origin corrections
bibtex main.aux
git status
git add .
git commit -m "updated corrections"
git push origin corrections
git status
git add .
git commit -m "updated corrections"
git push origin corrections
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf main.pdf
git status
git diff chapters/chapter_3.tex 
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf main.pdf
git status
git add ,.
git add .
git commit -m "updated corrections"
git push origin corrections
git status
git add .
git commit -m "updated corrections"
git push origin corrections
git status
git add .
git commit -m "updated corrections"
git push origin corrections
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf main.pdf
pdftotext main.pdf main.txt
git status
git add .
git commit -m "updated corrections"
git push origin corrections
git status
git add .
git commit -m "updated corrections"
git push origin corrections
git status
git checkout .
git status
git add .
git commit -m "updated corrections"
git push origin corrections
git status
git add 
git add .
git commit -m "updated corrections"
git push origin corrections
pdftotext main.pdf main.txt
git status
git add .
git commit -m "updated corrections"
git push origin corrections
git status
git add .
git commit -m "updated corrections"
git push origin corrections
git status
git add .
git commit -m "updated corrections"
git push origin corrections
pdftotext main.pdf main.txt
wc main.txt 
rm main.txt 
pdftotext main.pdf main.txt
git status
git add .
git commit -m "updated corrections"
git push origin corrections
pdftotext main.pdf main.txt
git status
git add .
git commit -m "updated corrections"
git push origin corrections
cd chapters/
rm -r auto/
rm -r *.aux
git status
cd ../
git status
git add .
git commit -m "updated corrections"
git push origin corrections
pdftotext main.pdf main.txt
git status
git add .
git commit -m "updated corrections"
git push origin corrections
pdftotext main.pdf main.txt
git status
git add .
git commit -m "updated corrections"
git push origin corrections
pdftotext main.pdf main.txt
git status
git diff
git status
exit
ping google.com
sudo snap refresh
sudo systemctl restart networking.service 
cd C6W/Writeup/latex/
git diff chapters/chapter_2.
git diff chapters/chapter_2.tex
exit
git status
cd ../
git diff chapters/chapter_2.tex 
git status
git add .
git commit -m "updated corrections"
git push origin corrections
git checkout draft
git pull origin corrections
git checkout corrections
git diff chapters/chapter_2.tex 
git status
git add .
git commit -m "updated corrections"
git push origin corrections
pdftotext main.pdf main.txt
git status
git add .
git commit -m "updated corrections"
git push origin corrections
git status
git add .
git commit -m "updated corrections"
git push origin corrections
exit
git diff chapters/chapter_2.
git diff chapters/chapter_2.tex
opolysaccharides also often play and important role in bacterial virulence. They are able assist with i
nhibiting complement activation by masking antigenic surface components, such as cell surface proteins, fr
om the host immune system.\cite{Horwitz1980a, Moxon1990a, Roitt2011a} It has also been shown that the net 
negative charge of CPSs assists in conferring immune resistance and similarly the more negatively charged 
the capsule, the greater the ability of the bacterial cell to inhibit phagocytosis. Exopolysaccharides, pa
rticularly those containing sialic acid,\cite{Wyle1972a} are also capable of mimicking host antigens disru
pting the ability of the immune system to differentiate between self and non-self cells. In addition, exop
olysaccharides can also help prevent opsonization as well as complement-mediated killing if the bacterium 
is phagocytosed.\cite{Jones2005a}exit
exit
sudo snap refresh
exit
ping 192.168.1.50
ping 192.168.1.51
ping 192.168.1.52
ping 192.168.1.53
ping 192.168.1.54
ping 192.168.1.55
ping 192.168.1.58
ping 192.168.1.56
ping 192.168.1.55
ping 192.168.1.57
ping 192.168.1.59
ssh timol192.168.1.57
ssh timol@192.168.1.57
ssh timol@192.168.1.29
exit
ssh timol@192.168.1.29
exit
cd Downloads/
scp -r The\ Ballad\ of\ Songbirds\ and\ Snakes\ A\ Hunger\ Games\ Novel.m4b* timol@192.168.1.29:/home/timol/Downloads/Shared
exit
ifconfig
ping google.com
sudo apt update
ping google.com
P
ping google.com
sudo apt update
sudo snap refresh
sudo apt update
exit
sudo apt upgrade
sudo apt autoremove
sudo apt install rtl8821ce-dkms 
exit
sudo snap refresh
sudo apt update
sleep 5 && echo yellow
htop
htop
exit
cd ../images/
cd atom_distance/
ls
cd C6W/Studies/Dynamics/NAMD/Shigella/MD/Solution/y_s_flexneri/y_flexneri_6RU/trajectories/
ls
vmd -pdb y_s_flexneri_6ru.pdb -psf y_s_flexneri_6ru.psf 
emacs -nw e2e.vmd 
l
vmd -psf y_s_flexneri_6ru.psf -dcd y_s_flexneri_6ru_0-2000ns.dcd 
exit
cd C6W/Studies/Dynamics/NAMD/Shigella/MD/Solution/y_s_flexneri/y_flexneri_6RU/trajectories/
vmd -psf y_s_flexneri_6ru.psf -dcd y_s_flexneri_6ru_0-2000ns.dcd 
cd ../../../
cd 7a_s_flexneri/7a_s_flexneri_6ru/
cd tr
cd standard/trajectories/
reset
vmd -psf 7a_s_flexneri_6ru.psf -dcd 7a_s_flexneri_6ru_0-1000ns.dcd 
cd ../../../../7b_s_flexneri/7b_s_flexneri_6ru/standard/trajectories/
vmd -psf 7b_s_flexneri_6ru.psf -dcd 7b_s_flexneri_6ru_0-1000ns.dcd 
cd ../../../../7a_s_flexneri/7a_s_flexneri_6ru/standard/trajectories/
vmd -psf 7a_s_flexneri_6ru.psf -dcd 7a_s_flexneri_6ru_0-1000ns.dcd 
cd ../../../
cd ../y_s_flexneri/y_flexneri_6RU/images/snapshots/
ls
emacs -nw  ../../trajectories/snapshot.vmd 
cd ../../trajectories/
vmd -psf y_s_flexneri_6ru.psf -dcd y_s_flexneri_6ru_0-2000ns.dcd 
exit
ssh dinat@192.168.3.109
exit
du -hcs C6W/
exit
cd C6W/Studies/
ls -lha
du -hcs ./*
cd structure_analysis/
du -hcs ./*
cd output/
ls
du -hcs ./*
cd ../../
cd ../
ls
du -hcs ./*
ls Presentations/
cd Presentations/q
cd Presentations/
du -hcs ./*
cd Progress_update_2019-09-12/
ls
rm -r Progress_update_2019-09-12_v1.pptx Progress_update_2019-09-12_v2.pptx Progress_update_2019-09-12_v3.pptx Progress_update_2019-09-12_v4.pptx Progress_update_2019-09-12_v5.pptx Progress_update_2019-09-12_v6.pptx
ls -lhs
cd ../
ls -lha
reset
du -hcs
du -hcs ./*
cd Progress_update_2019-02-12/
ls
cd ../
ls
cd Progress_update_2020-04-27/
ls
rm -r Progress_update_2020-04-27_Draft_v1.pptx 
rm -r Progress_update_2020-04-27_Draft_v2
rm -r Progress_update_2020-04-27_Draft_v2.pptx 
rm -r Progress_update_2020-04-27_Draft_v3.pptx 
rm -r Progress_update_2020-04-27_Draft_v4.pptx 
rm -r Progress_update_2020-04-27_Draft_v5.pptx 
rm -r Progress_update_2020-04-27_Draft_v6.pptx 
rm -r Progress_update_2020-04-27_Draft_v7.pptx 
ls -lha
rm -r Thumbs.db*
exit
cd C6W/Presentations/
du -hcs ./*
cd Posters/
ls
du -hcs ./*
cd ICS_2018/
ls
ls old/
rm -r old/
du -hcs ./*
rm -r ./ICS_2018_Poster_Draft_v1.pptx 
rm -r ./ICS_2018_Poster_Draft_v2.pptx 
rm -r ./ICS_2018_Poster_Draft_v3.pptx 
rm -r ./ICS_2018_Poster_Draft_v4.pptx 
rm -r ./ICS_2018_Poster_Draft_v5.pptx 
rm -r ./ICS_2018_Poster_Draft_v6.pptx 
rm -r ./ICS_2018_Poster_Draft_v7.pptx 
rm -r ./ICS_2018_Poster_Draft_v8.pptx 
rm -r ./ICS_2018_Poster_Draft_v9.pptx 
rm -r ./ICS_2018_Poster_Draft_v10.pptx 
rm -r ./ICS_2018_Poster_Draft_v11.pptx 
rm -r ./ICS_2018_Poster_Draft_v12.pptx 
rm -r ./ICS_2018_Poster_Draft_v13.pptx 
ls -lha
rm -r ./ICS_2018_Poster_Draft_v14.pptx 
rm -r ./ICS_2018_Poster_Draft_v15.pptx 
rm -r ./ICS_2018_Poster_Draft_v16.pptx 
rm -r ./ICS_2018_Poster_Draft_v17.pptx 
rm -r ./ICS_2018_Poster_Draft_v18.pptx 
rm -r ./ICS_2018_Poster_Draft_v19.pptx 
rm -r ./ICS_2018_Poster_Draft_v20.pptx 
rm -r ./ICS_2018_Poster_Draft_v21.pptx 
rm -r ./ICS_2018_Poster_Draft_v22.pptx 
rm -r ./ICS_2018_Poster_Draft_v23.pptx 
ls -lha
cd ../../
cd ../
du -hcs .
du -hcs ./*
cd Presentations/
du -hcs ./*
du -sh -- *  | sort -rh 
cd Progress_update_2019-04-23/
du -sh -- *  | sort -rh 
rm -r Progress_update_2019-04-23_v1.pptx 
rm -r Progress_update_2019-04-23_v2.pptx 
rm -r Progress_update_2019-04-23_v3.pptx 
rm -r Progress_update_2019-04-23_v4.pptx 
rm -r Progress_update_2019-04-23_v5.pptx 
rm -r Progress_update_2019-04-23_v6.pptx 
ls -lha
cd ../
du -sh -- *  | sort -rh 
cd Progress_update_2019-02-12/
du -sh -- *  | sort -rh 
cd ../
du -sh -- *  | sort -rh 
cd Proposal/
ls
du -sh -- *  | sort -rh 
rm Proposal_v1.pptx 
rm Proposal_v2.pptx 
rm Proposal_v3.pptx 
rm Proposal_v4.pptx 
rm Proposal_v5.pptx 
rm Proposal_v6.pptx 
rm Proposal_v7.pptx 
rm Proposal_v8.pptx 
rm Proposal_v9.pptx 
rm Proposal_v10.pptx 
rm Proposal_v11.pptx 
rm Proposal_v12.pptx 
rm Proposal_v13.pptx
rm Proposal_v14.pptx
exit
git status
ls -lha
git status
cd Studies/
cd ../Writeup/
cd misc/
cd ../../
cd Studies/
cd noesy_buildup/
cd standard_method/
cd noe_buildup_v1/
cd 120326-O142/
48G	Studies
cd O142/
cd ../../
cd ../
cd ../../
mv noesy_buildup/ ~/Downloads/
ls ~/Downloads/
cd ../
cd C6W/Studies/
ls
du -hcs ./*
exit
du -hcs C6W/
cd C6W/Studies/
ls
du -sh -- *  | sort -rh 
mv casper/ ~/Downloads/
mv docker/ ~/Downloads/
cd ../../
cd C6W/
du -sh -- *  | sort -rh 
du -hcs ./*

du -hcs 
cd C6W/Studies/
ls
du -sh -- *  | sort -rh 
cd ../
du -sh -- *  | sort -rh 
mv Presentations/ ~/Downloads/
du -hcs ./*
exit
tcl
tclsh render_snapshots.tcl 
cd ../../../
cd ../7b_s_flexneri/7b_s_flexneri_6ru/standard/images/
cd ../../../../
cd 7b_s_flexneri/7b_s_flexneri_6ru/standard/images
cd ../trajectories/
vmd -psf 7b_s_flexneri_6ru.psf -dcd 7b_s_flexneri_6ru_0-1000ns.dcd 
exit
ssh timol@192.168.3.17
exit
exirt
exit
ssh timol@192.168.3.17
sudo apt install openssh-server
exit
sudo systemctl stop docker.service 
sudo systemctl stop docker.socket 
exit
htop
sudo systemctl stop teamviewerd.service 
htop
cd Downloads/
ls
sudo dpkg -i  plexmediaserver_1.31.3.6868-28fc46b27_amd64.deb 
sudo apt remove plexmediaserver 
sudo apt autoermove
sudo apt autoremove
sudo apt install apt-transport-https curl wget -y
echo deb [signed-by=/usr/share/keyrings/plex.gpg] https://downloads.plex.tv/repo/deb public main | sudo tee /etc/apt/sources.list.d/plexmediaserver.list
sudo wget -O- https://downloads.plex.tv/plex-keys/PlexSign.key | gpg --dearmor | sudo tee /usr/share/keyrings/plex.gpg
sudo apt install plexmediaserver -y
sudo apt update
sudo apt install plexmediaserver -y
sudo systemctl status plexmediaserver
sudo mkdir -p /opt/plexmedia/Movies
sudo mkdir -p "/opt/plexmedia/TV Shows"
cd /opt/plexmedia/TV\ Shows/
mv ~/Downloads/Shared/TV\ Shows/* .
sudo mv ~/Downloads/Shared/TV\ Shows/* .
sudo mv ~/Downloads/Shared/Movies/ ../Movies/
sudo chown -R plex: /opt/plexmedia
mv ../Movies/Movies/* ../Movies/
sudo mv ../Movies/Movies/* ../Movies/
ls
cd ../Movies/
ls
rm -r Movies/
sudo rm -r Movies/
sudo systemctl stop plexmediaserver
sudo apt upgrade
sudo apt update && sudo apt upgrade
htop
cd /opt/plexmedia/TV\ Shows/
sudo mv ~/Downloads/The.Mandalorian.S03E01.1080p.DSNP.WEBRip.DDP5.1.x264-NTb\[rarbg\]/ .
l
cd ~/Downloads/
sudo rm -r wget-log 
exit
vexit
exit
exit
xit
exit
vexit
exit
cp config config.old
i3 --version
sudo apt exit
exit
sudo apt update && sudo apt upgrade
sudo apt upgrade
sudo apt update
powertop 
s-tui
sudo apt install libxcb1-dev libxcb-keysyms1-dev libpango1.0-dev libxcb-util0-dev libxcb-icccm4-dev libyajl-dev libstartup-notification0-dev libxcb-randr0-dev libev-dev libxcb-cursor-dev libxcb-xinerama0-dev libxcb-xkb-dev libxkbcommon-dev libxkbcommon-x11-dev autoconf xutils-dev libtool automake
sudo apt install libxcb-xrm-dev
cd tmp/
git clone https://github.com/Airblader/xcb-util-xrm
cd xcb-util-xrm
git submodule update --init
./autogen.sh --prefix=/usr
make
sudo make install
/usr/lib/apt/apt-helper download-file https://debian.sur5r.net/i3/pool/main/s/sur5r-keyring/sur5r-keyring_2023.02.18_all.deb keyring.deb SHA256:a511ac5f10cd811f8a4ca44d665f2fa1add7a9f09bef238cdfad8461f5239cc4
sudo apt install ./keyring.deb
echo "deb http://debian.sur5r.net/i3/ $(grep '^DISTRIB_CODENAME=' /etc/lsb-release | cut -f2 -d=) universe" | sudo tee /etc/apt/sources.list.d/sur5r-i3.list
sudo apt update
sudo apt upgrade
i3 --version
exit
emacs -nw ../images/structures/colours.vmd 
exit
vmd -psf 7a_s_flexneri_6ru.psf -dcd 7a_s_flexneri_6ru.pdb 
vmd -psf 7a_s_flexneri_6ru.psf -pdb 7a_s_flexneri_6ru.pdb 
exit
mkdir analysis
cd analysis/
cp -r ../../../7a_s_flexneri/7a_s_flexneri_6ru/standard/analysis/clusters/ .
cd ../trajectories/
vmd -psf y_s_flexneri_6ru.psf -dcd y_s_flexneri_6ru_0-2000ns.dcd 
exit
htop
exit
sudo systemctl stop docker.service 
sudo systemctl stop docker.socket
sudo systemctl stop teamviewerd.service 
ssh timol@192.168.3.10
ssh timol@192.168.3.122
exit
ssh timol@192.168.3.122
exit
ssh timol@192.168.3.122
ssh timol@192.168.3.122
ssh timol@192.168.3.121
ssh timol@192.168.3.122
ssh timol@192.168.3.117
ssh timol@192.168.3.121
emacs ~/.ssh/known_hosts
emacs -nw ~/.ssh/known_hosts
ssh timol@192.168.3.121
ssh timol@192.168.3.124
ssh timol@192.168.3.122
sudo lsblk -f
ssh timol@192.168.3.122
ssh timol@192.168.1.29
ssh timol@192.168.1.22
ssh timol@192.168.1.29
exit
ssh timol@192.168..22
ssh timol@192.168.1.22
ssh timol@192.168.1.29
ssh timol@192.168.1.22
ssh timol@192.168.1.29
tmux
ssh timol@192.168.1.29
ssh timol@192.168.1.22
ssh timol@192.168.1.29
exit
htop
sudo systemctl stop plexmediaserver.service 
sudo systemctl stop teamviewerd.service 
exit
sudo systemctl start docker.service 
sudo systemctl start docker.socket
exit
docker ps
bash docker_run.sh 
ls
sh docker_run.sh 
bash docker_run.sh
docker ps
docker ps -a
docker start 7b25eb55dac7
sudo apt remove apache2
docker start 7b25eb55dac7
docker ps
sudo systemctl start rtorrent.service
sudo apt install rtorrent
systemctl
exit
rtorrent
exit
sudo apt install apache2-utirls
sudo apt install apache2-utils
sudo apt install apache2
mv ruTorrent-4.0.3/ /var/www/
sudo mv ruTorrent-4.0.3/ /var/www/
apt-get install libapache2-mod-scgi
sudo apt-get install libapache2-mod-scgi
l /var/www/
cd /var/www/ruTorrent-4.0.3/
l
touch test.txt
rm test.txt
ls conf/
tmux
docker ps
docker exec -it 7b25eb55dac7 bash
docker ps
docker stop 7b25eb55dac7
tmux ls
tmux a -t 0
tmux ls
exit
docker ps
docker ps -a
docker rm 7b25eb55dac7
docker imags
docker images
docker rmi b507a21bb153
exit
sudo systemctl stop docker.socket
sudo systemctl stop docker.service
sudo systemctl disable docker.service
sudo systemctl disable docker.socket
sudo systemctl disable teamviewerd.service 
sudo systemctl disable plexmediaserver.service 
exit
./mendeley-reference-manager-2.86.0-x86_64.AppImage 
ssh timol@192.168.1.29
rysnc --progress /media/timol/rootfs/home/timol/Downloads/Shared/Walk.With.Me.2021.1080p.BluRay.REMUX.AVC.FLAC.2.0-TRiToN.mkv /media/timol/New Volume/Shared/rtorrent
sudo apt install rsync
rsyncc --progress /media/timol/rootfs/home/timol/Downloads/Shared/Walk.With.Me.2021.1080p.BluRay.REMUX.AVC.FLAC.2.0-TRiToN.mkv /media/timol/New Volume/Shared/rtorrent
rsync --progress /media/timol/rootfs/home/timol/Downloads/Shared/Walk.With.Me.2021.1080p.BluRay.REMUX.AVC.FLAC.2.0-TRiToN.mkv /media/timol/New Volume/Shared/rtorrent
rsync --progress /media/timol/rootfs/home/timol/Downloads/Shared/Walk.With.Me.2021.1080p.BluRay.REMUX.AVC.FLAC.2.0-TRiToN.mkv /media/timol/New\ Volume/Shared/rtorrent
reset
sudo apt install testdik
sudo apt install testdisk
testdisk --version
testdisk
ssh timol@192.168.1.29
emacs -nw .ssh/known_hosts
ssh timol@192.168.1.29
ssh pi@192.168.1.29
s
ssh pi@192.168.1.29
exit
ssh pi@192.168.1.29
exit
ssh pi@192.168.1.29
sudo apt-get install libreoffice-pdfimport
sudo apt-get install libreoffice-pdfimport abiword
ssh pi@192.168.3.179
ssh pi@192.168.3.176
exit
ssh pi@192.168.3.176
exit
ssh pi@192.168.3.176
exit
ssh pi@192.168.3.176
ssh pi@192.168.1.8
htop
exit
cat /var/log/syslog
emacs -nw /var/log/syslog
exit
sudo apt update && sudo apt upgrade
exit
top
htop
exit
cd ../../../7a_s_flexneri/7a_s_flexneri_6ru/standard/trajectories/
vmd -psf 7a_s_flexneri_6ru.psf -dcd 7a_s_flexneri_6ru_0-1000ns.dcd 
exit
mkdir ../analysis
mv trajrmsd* ../analysis/
vmd -psd aDGlc13_aDGlc14_bDGlcNAc.psf -dcd aDGlc13_aDGlc14_bDGlcNAc_0-4000ns.dcd 
vmd -psf aDGlc13_aDGlc14_bDGlcNAc.psf -dcd aDGlc13_aDGlc14_bDGlcNAc_0-4000ns.dcd 
cd ~/C6W/Studies/Dynamics/NAMD/Shigella/MD/Solution/general_structures/aDGlc13_aDGlc14_bDGlc/images/structures/
mv frame_* glc_* old/
l
cd ../../trajectories/
vmd -psf aDGlc13_aDGlc14_bDGlc.psf -dcd aDGlc13_aDGlc14_bDGlc_0-2000ns.dcd 
cd ~/C6W/Studies/Dynamics/NAMD_glycam/MD/solution/general_structures/aDGlc13_aDGlc14_bDGlc/images/structures/
l
cd ../../trajectories/
l
cd ../images/structures/
mkdir old
mv *.dat* old/
mv *.png* old/
cd ../../trajectories/
l
vmd -psf 1_noWAT.psf -dcd aDGlc13_aDGlc14_bDGlc_glycam_0-2000ns.dcd 
cd ~/C6W/Studies/Dynamics/NAMD/Shigella/MD/Solution/general_structures/aDGlc13_aDGlc14_bDGlc/trajectories/
vmd -psf aDGlc13_aDGlc14_bDGlc.psf -dcd aDGlc13_aDGlc14_bDGlc_0-2000ns.dcd 
cd ~/C6W/Studies/Dynamics/NAMD/Shigella/MD/Solution/general_structures/aDGlc13_aDGlc14_bDGlcNAc/images/structures/
cd ../../../aDGlc13_aDGlc14_bDGlcNAc/trajectories/
mkdir old
mv *.dat* old/
mv ../images/structures/*.dat* ../images/structures/old/
mkdir ../images/structures/old/
rm -r old/
mv ../images/structures/*.dat* ../images/structures/old/
mv ../images/structures/*.png* ../images/structures/old/
vmd -psf aDGlc13_aDGlc14_bDGlcNAc.psf -dcd aDGlc13_aDGlc14_bDGlcNAc_0-4000ns.dcd 
cd ../../../../../../../NAMD_glycam/MD/solution/general_structures/aDGlc13_aDGlc14_bDGlcNAc/trajectories/
mv ../images/structures/*.dat* ../images/structures/old/
vmd -psf 1_noWAT.psf -dcd aDGlc13_aDGlc14_bDGlcNAc_glycam_0-4000ns.dcd
pwd
cd /home/timol/C6W/Studies/Dynamics/NAMD/Shigella/MD/Solution/y_s_flexneri/y_flexneri_6RU/trajectories/
ls
vmd -psf y_s_flexneri_6ru.psf -dcd y_s_flexneri_6ru_0-2000ns.dcd 
exit
cd ../
git status
git add .
git commit -m "updated corrections"
git push origin corrections
git status
git add .
git commit -m "updated corrections"
git push origin corrections
exit
ssh pi@http://192.168.1.29/
ssh pi@192.168.1.29
exit
ssh pi@192.168.1.29
exit
ssh pi@192.168.1.29
exit
ssh pi@192.168.1.29
exit
ssh pi@192.168.1.29
exit
ssh pi@192.168.1.29
exit
ssh pi@192.168.1.29
reset
ssh pi@192.168.1.29
exit
ssh pi@192.168.1.29
pdftotext main.pdf main.txt
exit
htop
exit
cd /home/timol/studies/wapt/lessons/video/
cd /home/timol/studies/wapt/lessons/videos/
l
ffmpeg -i 2 - 24 March.mp4 -ss 00:00:12 -c copy -t 01:05:6 output.mp4
ffmpeg -i "2 - 24 March.mp4" -ss 00:00:12 -c copy -t 01:05:6 output.mp4
ffmpeg -i "2 - 24 March.mp4" -ss 00:00:12 -c copy -t 00:45:21 output.mp4
ffmpeg -i "2 - 24 March.mp4" -ss 00:46:01 -c copy -t 01:03:36 output2.mp4
pwd
ffmpeg -i "1 - 22 March.mp4" -ss 00:00:00 -c copy -t 00:45:26 1 - Physiology.mp4
ffmpeg -i "original videos/1 - 22 March.mp4" -ss 00:00:00 -c copy -t 00:45:26 1 - Physiology.mp4
ffmpeg -i "original videos/1 - 22 March.mp4" -ss 00:00:00 -c copy -t 00:45:26 "1 - Physiology.mp4"
ffmpeg -i "1 - Physiology.mp4" -ss 00:00:02 -c copy -t 00:45:26 "1 - Physiology2.mp4"
for f in *Anatomy/*.mp4; do echo "file '$f'" >> anatomy_videos.txt; done
ffmpeg -f concat -i videos.txt -c copy all_anatomy_videos.mp4
ffmpeg -f concat -i anatomy_videos.txt -c copy all_anatomy_videos.mp4
ffmpeg -i "anatomy/2_24-March.mp4" -ss 00:00:00 -c copy -t 00:17:37 2_24-March.mp4
htop
for f in *Anatomy/*.mp4; do echo "file '$f'" >> anatomy_videos.txt; done
ffmpeg -f concat -i anatomy_videos.txt -c copy all_anatomy_videos.mp4
for f in *anatomy/*.mp4; do echo "file '$f'" >> anatomy_videos.txt; done
ffmpeg -f concat -i anatomy_videos.txt -c copy all_anatomy_videos.mp4
exit
caja . --no-desktop
cd Downloads/
cd ventoy-1.0.91/
l
sudo ./VentoyWeb.sh
exit
sudo apt install rufus
~~VBoxManage list usbhost
VBoxManage list usbhost
l /dev/bus/usb/
sudo adduser $USER vboxusers
sudo addgrp $USER vboxusers
$GROUP
$USER
$User
echo $USER
echo $GROUP
echo $GRP
l

sudo addgroup timol vboxusers
echo "https://superuser.com/questions/956622/no-usb-devices-available-in-virtualbox"
exit
pdftotext main.pdf main.txt
git status
git add .
git commit -m "updated corrections"
git push origin corrections
git status
git add chapters/chapter_6.tex 
git commit -m "updated corrections"
git push origin corrections
git add chapters/chapter_6.tex 
git commit -m "updated corrections"
git push origin corrections
git add chapters/chapter_9.tex 
git commit -m "updated corrections"
git push origin corrections
git add .
git commit -m "updated corrections"
git push origin corrections
git status
git add .
git commit -m "updated corrections"
bibtex main.aux 
git status
git add chapters/chapter_3.tex 
git add library.bib 
git diff chapters/chapter_1.tex 
git status
git add chapters/chapter_1.tex 
git commit -m "updated corrections"
git push origin corrections
gitk
git add .
git commit -m "updated corrections"
git push origin corrections
git
bibtex main.aux 
git status
git add .
git commit -m "updated corrections"
git push origin corrections
git status
git add .
git commit -m "updated corrections"
git push origin corrections
git status
git add .
git commit -m "updated corrections"
git push origin corrections
bibtex main.aux 
git add .
git commit -m "updated corrections"
git push origin corrections
git status
git diff
git add .
git push origin corrections
git commit -m "updated corrections"
git push origin corrections
exit
ssh pi@192.168.1.29
exit
gitk
exit
git status
git add .
git commit -m "updated corrections"
git push origin corrections
git status
git add .
git commit -m "updated corrections"
git push origin corrections
git add .
git commit -m "updated corrections"
git push origin corrections
git status
git add .
git commit -m "updated corrections"
git push origin corrections
git status
git add .
git commit -m "updated corrections"
git push origin corrections
git status
git chapters/chapter_4.tex 
git add chapters/chapter_4.tex 
git commit -m "updated corrections"
git push origin corrections
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf main.pdf
git diff
git status
git add .
git commit -m "updated corrections"
git push origin corrections
git add .
git commit -m "updated corrections"
git push origin corrections
git status
git add .
git commit -m "updated corrections"
git push origin corrections
git add .
git commit -m "updated corrections"
git push origin corrections
git add .
git commit -m "updated corrections"
git push origin corrections
git add .
git commit -m "updated corrections"
git push origin corrections
bibtex main.aux 
git add .
git commit -m "updated corrections"
git push origin corrections
git add .
git commit -m "updated corrections"
git push origin corrections
git add .
git commit -m "updated corrections"
git push origin corrections
git add .
git commit -m "updated corrections"
git push origin corrections
git status
git add .
git commit -m "updated corrections"
git push origin corrections
git add .
git commit -m "updated corrections"
git push origin corrections
bibtex main.aux 
git status
git add .
git commit -m "updated corrections"
git push origin corrections
git status
git add .
git commit -m "updated corrections"
git push origin corrections
git add .
git commit -m "updated corrections"
git push origin corrections
git add .
git commit -m "updated corrections"
git push origin corrections
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small1.pdf main.pdf
git add .
git commit -m "updated corrections"
git push origin corrections
git add .
git commit -m "updated corrections"
git push origin corrections
git add .
git commit -m "updated corrections"
git push origin corrections
git status
git add .
git commit -m "updated corrections"
git push origin corrections
bibtex main.aux 
git add .
git status
git commit -m "updated corrections"
git push origin corrections
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small2.pdf main.pdf
exit
source ~/.venv/bin/activate
python3 histogram.py 
python3 cp_heat_map_plot.py 
exit
ssh pi@192.168.1.29
sudo apt update && sudo apt ugrade
dirs
exit
ssh pi@192.168.1.56
ssh pi@192.168.1.60
ssh pi@192.168.1.61
ssh pi@192.168.1.56
ssh pi@192.168.1.60
ssh pi@192.168.1.66
exit
cd anatomy/
cd ../physiology/
l
mv ~/Downloads/Zaheer\ 16\ May.mp4 3_16-May.mp4
l
cd ../
l
l original_videos/
ffmpeg -f concat -i anatomy_videos.txt -c copy all_anatomy_videos.mp4
ssh pi@192.168.1.66
sudo reboot
ssh pi@192.168.1.66
exit
ssh pi@192.168.1.66
exit
cd ../../../Writeup/latex/
git status
git diff chapters/chapter_10.tex 
gitk
git status
git add .
git commit -m "updated corrections"
git push origin corrections
exit
source ~/.venv/bin/activate
exut
exit
ssh pi@192.168.1.66
ssh pi@192.168.1.71
ssh pi@192.168.1.79
ssh pi@192.168.1.71
ssh pi@192.168.1.79
ssh pi@192.168.1.68
ssh pi@192.168.1.58
ssh pi@192.168.1.66
htop
ssh pi@192.168.1.66
exit
ssh pi@192.168.1.66
exit
pdftotext main.pdf main.txt
git status
git add chapters/
git commit -m "updated corrections"
git push origin corrections
git status
git add chapters/
git commit -m "updated corrections"
git push origin corrections
pdftotext main.pdf main.txt
git status
girt add chapters/
git add chapters/
git commit -m "updated corrections"
git push origin corrections
git status
pdftotext main.pdf main.txt
exit
ssh pi@192.168.1.66
exit
ssh pi@192.168.1.66
exit
ssh pi@192.168.1.66
exit
ssh pi@192.168.1.66
exit
ssh pi@192.168.1.66
crontab -e
ssh pi@192.168.1.66
exit
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf Application_portfolio_Final.pdf 
exit
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=Application_Portfolio.pdf Application_portfolio_Final.pdf 
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/ebook -dNOPAUSE -dQUIET -dBATCH -sOutputFile=Application_Portfolio.pdf Application_portfolio_Final.pdf 
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/screen -dNOPAUSE -dQUIET -dBATCH -sOutputFile=Application_Portfolio.pdf Application_portfolio_Final.pdf 
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/screen -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf UCT_Transcript.pdf 
exit
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/screen -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf Application_portfolio_uct_v7.pdf 
exit
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=Application_Portfolio.pdf Application_Portfolio_Final.pdf 
exit
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/screen -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf Application_portfolio_uct_v7.pdf 
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/screen -dNOPAUSE -dQUIET -dBATCH -sOutputFile=Application_Portfoli_Final_wo_doc.pdf Application_Portfolio_Final.pdf 
exit
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/screen -dNOPAUSE -dQUIET -dBATCH -sOutputFile=Application_Portfolio_wo_doc_compressed.pdf Application_Portfolio_wo_doc.pdf 
exit
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/screen -dNOPAUSE -dQUIET -dBATCH -sOutputFile=Application_Portfolio.pdf Application_Portfolio_Final.pdf 
exit
ssh pi@192.168.1.66
exit
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf ZT-Masters\ Certificate_certified.pdf 
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/ebook -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf ZT-Masters\ Certificate_certified.pdf 
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf ZT-Masters\ Certificate_certified.pdf 
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/ebook -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf ZT-Masters\ Certificate_certified.pdf 
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/ebook -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf UCT_Transcript_certified.pdf 
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/ebook -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf IB_School_Leaving_Certificate_certified.pdf 
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/ebook -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf Application_Portfolio_Final.pdf
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf Application_Portfolio_Final.pdf
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/ebook -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf Application_Portfolio_Final.pdf
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/screen -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf Application_Portfolio_Final.pdf
pwdp
pwd
exit
cd /home/timol/studies/applications/med_school/nmu
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/screen -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf Application_Portfolio_Final_1.pdf 
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/ebook -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf Application_Portfolio_Final_1.pdf 
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/ebook -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf Application_Portfolio_Final_2.pdf 
exit
cd /home/timol/studies/applications/med_school/nmu
exit
ifconfig /all
ifconfig
ssh pi@192.168.0.182
ssh pi@192.168.0.183
ssh pi@192.168.0.184
nmap -sP 192.168.100.0/200
nmap -sP 192.168.100.0/232
nmap -sP 192.168.0.0/32
nmap -sP 192.168.0.150/182
nmap -sP 192.168.0.0/32
nmap -sP 192.168.0.181
nmap -sP 192.168.0.182
nmap -sP 192.168.0.183
ssh pi@192.168.0.183
nmap -sP 192.168.0.188
ssh pi@192.168.0.188
nmap -sP 192.168.0.189
ssh pi@192.168.0.189
ssh pi@192.168.0.190
ssh pi@192.168.0.191
nmap -sP 192.168.0.185
nmap -sP 192.168.0.184
nmap -sP 192.168.0.190
nmap -sP 192.168.0.191
nmap -sP 192.168.0.192
nmap -sP 192.168.0.193
nmap -sP 192.168.0.193/
nmap -sP 192.168.0.193/32
nmap -sP 192.168.0.160/32
nmap -sP 192.168.0.170/32
sudo apt install arp-scan
nmap -sP 192.168.0.170/32
nmap -sP 192.168.0.171
nmap -sP 192.168.0.172
nmap -sP 192.168.0.173
nmap -sP 192.168.0.174
nmap -sP 192.168.0.188
nmap -sP 192.168.0.187
nmap -sP 192.168.0.188
nmap -sP 192.168.0.187
nmap -sP 192.168.0.186
ssh pi@192.168.0.186
ssh pi@192.168.0.185
ssh pi@192.168.0.184
ssh pi@192.168.0.183
ssh pi@192.168.0.182
ssh pi@192.168.0.181
ssh pi@192.168.0.190
ssh pi@192.168.0.191
ssh pi@192.168.0.192
ssh pi@192.168.0.193
ssh pi@192.168.0.194
ssh pi@192.168.0.195
ssh pi@192.168.0.191
ssh pi@192.168.0.193
ssh pi@192.168.0.188
ssh pi@192.168.0.185
ssh pi@192.168.0.184
exit
ssh pi@192.168.51.134
exit
cd Downloads/
sudo dpkg -i net.downloadhelper.coapp-1.6.3-1_amd64.deb 
ssh pi@192.168.1.66
ssh pi@192.168.0.66
ssh pi@192.168.1.22
ssh pi@192.168.1.29
exit
ssh pi@192.168.1.29
exit
ssh pi@192.168.1.29
exit
ssh pi@192.168.1.29
exit
ssh pi@192.168.1.29
edit
exit
sudo snap refresh
wget https://firesonic.sc/streaming.php?imdb=tt7660850&s=4&e=4
exit
ssh pi@192.168.1.29
exit
ssh pi@192.168.1.29
l
exit
cd /home/timol/studies/applications/med_school/nmu
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/ebook -dNOPAUSE -dQUIET -dBATCH -sOutputFile=ID.pdf 22962788_ID.pdf 
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=ID.pdf 22962788_ID.pdf 
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/ebook -dNOPAUSE -dQUIET -dBATCH -sOutputFile=ID.pdf 22962788_ID.pdf
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf 229627889_Application_Portfolio_1.pdf 
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/ebook -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf 229627889_Application_Portfolio_1.pdf 
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/screen -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf 229627889_Application_Portfolio_1.pdf 
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf 229627889_Application_Portfolio_2.pdf 
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/ebook -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf 229627889_Application_Portfolio_2.pdf 
cd ../ul/
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/ebook -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf 229627889_Application_Portfolio_2.pdf 
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/ebook -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf 240019156_Application_Portfolio_3.pdf
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/ebook -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf 240019156_Application_Portfolio_2.pdf
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/screen -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf 240019156_Application_Portfolio_2.pdf
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/ebook -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf 240019156_Application_Portfolio_1.pdf
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/ebook -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf 240019156_Application_Portfolio_Part_1.pdf
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/screen -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf 240019156_Application_Portfolio_Part_1.pdf
exigt
exit
top
htop
exit
ssh pi@192.168.1.29
exit
htop
exit
ssh pi@192.168.1.29
exit
ssh pi@192.168.1.29
sudo shutdown -h now
ssh pi@192.168.1.29
l /media/timol/a2ee7aad-9c65-4635-bf9c-8757f8511997/Shared/
l
l /media/timol/a2ee7aad-9c65-4635-bf9c-8757f8511997/Shared/Movies/
htop
htop
ssh pi@192.168.1.29
eit
exit
cd /opt/plexmedia/
l
sudo chown -R timol .
htop
cd Downloads/
apktool d com.samsung.android.app.spage_6.0.02.6-600206000_minAPI26\(arm64-v8a\,armeabi\,armeabi-v7a\,x86\,x86_64\)\(nodpi\)_apkmirror.com.apk 
cd com.samsung.android.app.spage_6.0.02.6-600206000_minAPI26\(arm64-v8a\,armeabi\,armeabi-v7a\,x86\,x86_64\)\(nodpi\)_apkmirror.com/
l
cd ../
rm -r com.samsung.android.app.spage_6.0.02.6-600206000_minAPI26\(arm64-v8a,armeabi,armeabi-v7a,x86,x86_64\)\(nodpi\)_apkmirror.com
rm -r com.samsung.android.app.spage_6.0.02.6-600206000_minAPI26\(arm64-v8a,armeabi,armeabi-v7a,x86,x86_64\)\(nodpi\)_apkmirror.com.apk 
apktool d com.samsung.android.app.notes_4.4.07.24-440724000_minAPI23\(arm64-v8a,armeabi,armeabi-v7a\)\(nodpi\)_apkmirror.com.apk 
cd com.samsung.android.app.notes_4.4.07.24-440724000_minAPI23\(arm64-v8a,armeabi,armeabi-v7a\)\(nodpi\)_apkmirror.com/
cd ..
apktool b com.samsung.android.app.notes2_4.4.07.24-440724000_minAPI23\(arm64-v8a,armeabi,armeabi-v7a\)\(nodpi\)_apkmirror.com.apk 
apktool b com.samsung.android.app.notes2_4.4.07.24-440724000_minAPI23\(arm64-v8a,armeabi,armeabi-v7a\)\(nodpi\)_apkmirror.com/
apktool b notes2/
cd notes2/
l
cd ../
rm -r notes2/
apktool d com.samsung.android.app.notes_4.4.07.24-440724000_minAPI23\(arm64-v8a,armeabi,armeabi-v7a\)\(nodpi\)_apkmirror.com.apk 
cd com.samsung.android.app.notes_4.4.07.24-440724000_minAPI23\(arm64-v8a,armeabi,armeabi-v7a\)\(nodpi\)_apkmirror.com/
l
cd ../
apktool b com.samsung.android.app.notes_4.4.07.24-440724000_minAPI23\(arm64-v8a,armeabi,armeabi-v7a\)\(nodpi\)_apkmirror.com/
cd ~/tmp/
apktool d com.samsung.android.app.notes_4.4.07.24-440724000_minAPI23\(arm64-v8a,armeabi,armeabi-v7a\)\(nodpi\)_apkmirror.com.apk 
exit
ewxit
exit
ssh pi@192.168.1.29
exit
ssh pi@192.168.1.29
cd Downloads/
l
ssh pi@192.168.1.29
exit
ssh pi@192.168.1.29
ssh pi@192.168.1.29
sudo apt install ffmpegthumbnailer
ssh pi@192.168.1.29
exit
ssh pi@192.168.1.29
exit
cd tmp/video/
yt-dlp -v "https://player.vimeo.com/video/728087892?h=5cdb084e6a&dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/molecular-medicine-the-cell/"
source venv/bin/activate
yt-dlp -v "https://player.vimeo.com/video/728087892?h=5cdb084e6a&dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/molecular-medicine-the-cell/"
exit
mkdir v2
cd v2/
python3 -m venv venv
source venv/bin/activate
pip install youtube_dl
youtube_dl --verbose -v "https://player.vimeo.com/video/728087892?h=5cdb084e6a&dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/molecular-medicine-the-cell/"
youtube-dl --verbose -v "https://player.vimeo.com/video/728087892?h=5cdb084e6a&dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/molecular-medicine-the-cell/"
youtube-dl -v "https://player.vimeo.com/video/728087892?h=5cdb084e6a&dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/molecular-medicine-the-cell/"
youtube-dl -v "https://player.vimeo.com/video/728087892?h=5cdb084e6a&dnt=1&app_id=122963&controls=1&autoplay=0&api=1"
youtube-dl -v "https://player.vimeo.com/video/728087892?h=5cdb084e6a&dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/molecular-medicine-the-cell/"
mobj = re.findall(pattern, string, re.DOTALL)
youtube-dl -v "https://player.vimeo.com/video/728087892?h=5cdb084e6a&dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/molecular-medicine-the-cell/"
youtube-dl -v "https://player.vimeo.com/video/728087892?h=5cdb084e6a" --referer "https://seventhstar.co.za/topics/molecular-medicine-the-cell/"
youtube-dl -v "https://player.vimeo.com/video/728087892?h=5cdb084e6a&dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/molecular-medicine-the-cell/"
[g for g in mobj if g is not None]
youtube-dl -v "https://player.vimeo.com/video/728087892?h=5cdb084e6a&dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/molecular-medicine-the-cell/"
l
rm -r 
rm -r 'GEMP\ –\ LS\ –\ 08.07.2022\ -\ Week\ 1\ –\ Molecular\ Medicine-728087892.mp4.*
"
;
'
youtube-dl -v "https://player.vimeo.com/video/728087892?h=5cdb084e6a&dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/molecular-medicine-the-cell/"
youtube-dl --list-formats -v "https://player.vimeo.com/video/728087892?h=5cdb084e6a&dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/molecular-medicine-the-cell/"
youtube-dl --format hls-fastly_skyfire-5221mp4a.40.2  -v "https://player.vimeo.com/video/728087892?h=5cdb084e6a&dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/molecular-medicine-the-cell/"
youtube-dl --format hls-fastly_skyfire-5221 -v "https://player.vimeo.com/video/728087892?h=5cdb084e6a&dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/molecular-medicine-the-cell/"
youtube-dl --format dash-akfire_interconnect_quic-video-6a1a4152 -v "https://player.vimeo.com/video/728087892?h=5cdb084e6a&dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/molecular-medicine-the-cell/"
exit
htop
exit
pwd
cd /home/timol/tmp/video/
l
yt-dlp --list-formats -v "https://player.vimeo.com/video/728115222?h=b3b59a8a5a&dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/anatomy-skeletal-system-and-joints/"
yt-dlp --list-formats dash-akfire_interconnect_quic-video-1a84be0c -v "https://player.vimeo.com/video/729172940?dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/molecular-medicine-plasma-membrane-cell-cycle-and-protein-laboratory-techniques/"
yt-dlp --list-formats -v "https://player.vimeo.com/video/729172940?dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/molecular-medicine-plasma-membrane-cell-cycle-and-protein-laboratory-techniques/"
yt-dlp --list-formats -v "https://player.vimeo.com/video/728513593?h=be8d462e1b&dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/anatomy-muscular-system/"
ffmpeg -i "/home/timol/studies/wapt/lessons/tuts/videos/GEMP - LS - 08.07.2022 - Week 2 - Physiology [729173023].mp4" -i "/home/timol/studies/wapt/lessons/tuts/videos/GEMP - LS - 08.07.2022 - Week 2 - Physiology [729173023]_audio.mp4" -c:v copy -c:a aac output.mp4
yt-dlp --list-formats -v "https://player.vimeo.com/video/728525580?h=c053697fe1&dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/molecular-medicine-molecular-basis-of-genetics/"
yt-dlp --format dash-akfire_interconnect_quic-video-c8fcb3b8 -v "https://player.vimeo.com/video/728525580?h=c053697fe1&dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/molecular-medicine-molecular-basis-of-genetics/"
yt-dlp --list-formats -v "https://player.vimeo.com/video/702795542?dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/anatomy-neuroanatomy/"
yt-dlp --format hls-akfire_interconnect_quic-4189 -v "https://player.vimeo.com/video/702795542?dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/anatomy-neuroanatomy/"
yt-dlp --list-formats -v "https://player.vimeo.com/video/702813044?dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/molecular-medicine-the-molecular-basis-of-immunology/"
yt-dlp --format hls-akfire_interconnect_quic-4039 -v "https://player.vimeo.com/video/702813044?dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/molecular-medicine-the-molecular-basis-of-immunology/"
yt-dlp --list-formats -v "https://player.vimeo.com/video/702813044?dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/molecular-medicine-the-molecular-basis-of-immunology/"
yt-dlp --format dash-akfire_interconnect_quic-video-a57904c6 -v "https://player.vimeo.com/video/702813044?dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/molecular-medicine-the-molecular-basis-of-immunology/"
yt-dlp --list-formats  -v "https://player.vimeo.com/video/702820372?dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/physiology-somatic-and-special-senses/"
yt-dlp --format hls-akfire_interconnect_quic-4070 -v "https://player.vimeo.com/video/702820372?dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/physiology-somatic-and-special-senses/"
yt-dlp --list-formats -v "https://player.vimeo.com/video/703683388?dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/anatomy-cardiovascular-system/"
cd ~/work/esp/sapp_transmission_study/
git status
ls
l
cd ../
l
cd sapp_transmission_study/
l
ls -lha
cd sapp_transmission_pricing_app
l
git status
l app/sapp_transmission_pricing_tool/src/tmp/
git status
git add app/sapp_transmission_pricing_tool/src/README.md 
git status
l
cd app/
l
cd sapp_transmission_pricing_tool/
l
cd ../
l
cd ../
l app
ls
cd sapp_transmission_pricing_app/
l
git status
l
ls
git status
ls app/
cd app/
cd ../../
l
mkdir app
mv sapp_transmission_pricing_app/ app/
mkdir misc
l
rm '~$sapp.docx'
l
mv '9\ node\ model\ 210812\ master* misc/
mv 9\ node\ model\ 210812\ master* misc/
l
mv API3* misc/
mv Improvement\ of\ SAPP\ T\ Pricing\ Methodology\ for\ Implementation\ -\ Process\ description\ document\ outline\ draft\ 210* misc/
l
rm Thumbs.db
-rw-rw-r-- 1 timol timol 710K Jun 12  2021 'SAPP Network Data.xlsx'
lrm Thumbs.db:encryptable 
l
rm Thumbs.db:encryptable 
l
mv Scn1_slack1.zip misc/
mv SAPP* misc/
l
mv sapp_transmission_study_model_tech_spec_draft.docx misc/
l
mv October_Scenarios_9bus.zip misc/
mv sapp.docx misc/
mv methodology\ SAPP\ one\ stamp\ adjustment.pptx misc/
l
mv Copy\ of\ 9\ node\ model\ 210430\ master.xlsx misc/
mv CEC\ 2020\ Base\ Case.sav misc/
l
mv Appendix\ 1* misc/
l
mkdir transmission_pricing
cp -r app/sapp_transmission_pricing_app/app/sapp_transmission_pricing_tool/* .
l
mv InnoSapp.iss transmission_pricing/
mv venv/ transmission_pricing/
mv requirements.txt transmission_pricing/
mv src/ transmission_pricing/
l
cd transmission_pricing/
l
mkdir README.md
l
cd src/
l
cd ../../
cd 
cd work/esp/sapp_transmission_study/
l
git clone git@github.com:ztimol/transmission_pricing.git
l
cd transmission_pricing/
git status
l
mv ../new/ .
l
mv new/* .
l
rm -r new/
l
cp ~/work/esp/sapp_transmission_study/app/sapp_transmission_pricing_app/app/sapp_transmission_pricing_tool/.gitignore .
l
git status
mv src/disclaimer.txt .
l
git status
git add .
git status
git commit -m "all demo"
git config user.email ztimol@gmail.com
git config user.name Zaheer
git commit -m "all demo"
git status
git push origin main
cd ../../../
exit
cd 
cd tmp/video/
l
source venv/bin/activate
rm Week\ 5\ -\ Molecular\ Medicine\ -\ Cancer\ Part\ 1\ [703675362].mp4 
yt-dlp --format hls-akfire_interconnect_quic-4069 -v "https://player.vimeo.com/video/703675362?dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/molecular-medicine-cancer-part-1/"
yt-dlp --format hls-akfire_interconnect_quic-4046 -v "https://player.vimeo.com/video/703683388?dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/anatomy-cardiovascular-system/"
yt-dlp --format hls-akfire_interconnect_quic-3640 -v "https://player.vimeo.com/video/703725468?dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/molecular-medicine-cancer-part-2/"
yt-dlp --format hls-akfire_interconnect_quic-3701 -v "https://player.vimeo.com/video/703711772?dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/physiology-cardiovascular-system/"
exit
cd tmp/mdanalysis/package/
l
chown -R timol venv/
exit
git status
git pull origin develop
exit
cd ../../video/
bash download_all.sh 
exit
cd tmp/
mkdir video
cd video/
python3 -m venv venv
source venv/bin/activate
pip install yt-dlp
yt-dlp --h
yt-dlp -h
yt-dlp https://seventhstar.co.za/topics/anatomy-organisation-of-the-human-body-skin-and-tissue/
l
yt-dlp -u tmlzah001@myuct.ac.za -p Q9P7Kb#RSEwmyo4L https://seventhstar.co.za/topics/anatomy-organisation-of-the-human-body-skin-and-tissue/
yt-dlp -u tmlzah001@myuct.ac.za -p Q9P7Kb#RSEwmyo4L --video-password Q9P7Kb#RSEwmyo4L  https://seventhstar.co.za/topics/anatomy-organisation-of-the-human-body-skin-and-tissue/
yt-dlp -u tmlzah001@myuct.ac.za -p Q9P7Kb#RSEwmyo4L --video-password Q9P7Kb#RSEwmyo4L  https://player.vimeo.com/video/728072092?h=340c671d93&amp
yt-dlp -u tmlzah001@myuct.ac.za -p Q9P7Kb#RSEwmyo4L --video-password Q9P7Kb#RSEwmyo4L  https://player.vimeo.com/video/728072092?h=340c671d93\&amp
yt-dlp --video-password Q9P7Kb#RSEwmyo4L  https://player.vimeo.com/video/728072092?h=340c671d93\&amp
yt-dlp -u tmlzah001@myuct.ac.za -p Q9P7Kb#RSEwmyo4L --video-password Q9P7Kb#RSEwmyo4L  https://seventhstar.co.za/topics/anatomy-organisation-of-the-human-body-skin-and-tissue/
yt-dlp -u tmlzah001@myuct.ac.za -p Q9P7Kb#RSEwmyo4L --video-password Q9P7Kb#RSEwmyo4L  "https://player.vimeo.com/video/728072092?h=340c671d93&dnt=1&app_id=122963&controls=1&autoplay=0&api=1"
yt-dlp --video-password Q9P7Kb#RSEwmyo4L  "https://player.vimeo.com/video/728072092?h=340c671d93&dnt=1&app_id=122963&controls=1&autoplay=0&api=1"
aaaayoutube-dl -v "https://player.vimeo.com/video/166756641" --referer "https://www.heyhey.tv/exclusive-member-vid/1984-episode-39/"
yt-dlp -v "https://player.vimeo.com/video/728072092?h=340c671d93&dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/anatomy-organisation-of-the-human-body-skin-and-tissue/"
yt-dlp -v "https://player.vimeo.com/video/728087892?h=5cdb084e6a&dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/molecular-medicine-the-cell/"
yt-dlp -f bestvideo+bestaudio --v "https://player.vimeo.com/video/728087892?h=5cdb084e6a&dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/molecular-medicine-the-cell/"
yt-dlp --v "https://player.vimeo.com/video/728087892?h=5cdb084e6a&dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/molecular-medicine-the-cell/" -f bestvideo+bestaudio
yt-dlp -f bestvideo+bestaudio -v "https://player.vimeo.com/video/728087892?h=5cdb084e6a&dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/molecular-medicine-the-cell/"
yt-dlp -f best -v "https://player.vimeo.com/video/728087892?h=5cdb084e6a&dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/molecular-medicine-the-cell/"
yt-dlp -f mp4 -v "https://player.vimeo.com/video/728087892?h=5cdb084e6a&dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/molecular-medicine-the-cell/"
yt-dlp -f mp4 https://www.youtube.com/watch?v=hMx0pENRg9A
yt-dlp -f 18 -v "https://player.vimeo.com/video/728087892?h=5cdb084e6a&dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/molecular-medicine-the-cell/"
yt-dlp --verbose -v "https://player.vimeo.com/video/728087892?h=5cdb084e6a&dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/molecular-medicine-the-cell/"
deactivate
ip install yt-dlp
rm -r venv/
l
rm -r GEMP\ -\ LS\ -\ 08.07.2022\ -\ Week\ 1\ -\ Anatomy\ [728072092].mp4.part 
l
rm -r ./*
l
python3 -m venv venv
pip install yt-dlp
source venv/bin/activate
yt-dlp --verbose -v "https://player.vimeo.com/video/728087892?h=5cdb084e6a&dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/molecular-medicine-the-cell/"
l
rm -r ./*
yt-dlp --verbose -v "https://player.vimeo.com/video/728087892?h=5cdb084e6a&dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/molecular-medicine-the-cell/"
l
rm -r ./*
yt-dlp --verbose -v "https://player.vimeo.com/video/728087892?h=5cdb084e6a&amp" --referer "https://seventhstar.co.za/topics/molecular-medicine-the-cell/"
t-dlp -u tmlzah001@myuct.ac.za -p Q9P7Kb#RSEwmyo4L --video-password Q9P7Kb#RSEwmyo4L  "https://player.vimeo.com/video/728072092?h=340c671d93&dnt=1&app_id=122963&controls=1&autoplay=0&api=1"
yt-dlp -u tmlzah001@myuct.ac.za -p Q9P7Kb#RSEwmyo4L --video-password Q9P7Kb#RSEwmyo4L --verbose -v "https://player.vimeo.com/video/728087892?h=5cdb084e6a&amp" --referer "https://seventhstar.co.za/topics/molecular-medicine-the-cell/"
yt-dlp --video-password Q9P7Kb#RSEwmyo4L --verbose -v "https://player.vimeo.com/video/728087892?h=5cdb084e6a&amp" --referer "https://seventhstar.co.za/topics/molecular-medicine-the-cell/"
yt-dlp -v "https://player.vimeo.com/video/728087892?h=5cdb084e6a&amp" --referer "https://seventhstar.co.za/topics/molecular-medicine-the-cell/"
[download] Got error: HTTP Error 404: Not Found. Retrying fragment 112 (8/10)...
yt-dlp --verbose -v "https://player.vimeo.com/video/728087892?h=5cdb084e6a&dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/molecular-medicine-the-cell/"
l
python3 -m venv venv
pip install yt-dlp
yt-dlp --list-formats -v "https://player.vimeo.com/video/728072092?h=340c671d93&dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/anatomy-organisation-of-the-human-body-skin-and-tissue/"
yt-dlp --format dash-akfire_interconnect_quic-video-b207e889 -v "https://player.vimeo.com/video/728072092?h=340c671d93&dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/anatomy-organisation-of-the-human-body-skin-and-tissue/"
yt-dlp --format dash-akfire_interconnect_quic-video-b207e889 -v "https://player.vimeo.com/video/728087892?h=5cdb084e6a&dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/anatomy-organisation-of-the-human-body-skin-and-tissue/"
yt-dlp --list-formats -v "https://player.vimeo.com/video/728087892?h=5cdb084e6a&dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/anatomy-organisation-of-the-human-body-skin-and-tissue/"
yt-dlp --format dash-akfire_interconnect_quic-video-6a1a4152 -v "https://player.vimeo.com/video/728087892?h=5cdb084e6a&dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/anatomy-organisation-of-the-human-body-skin-and-tissue/"
yt-dlp --list-formats -v "https://www.zee5.com/d837d710-8131-460b-8dda-bac5ee40ed48" --referer "https://www.zee5.com/global/movies/details/india-lockdown/0-0-1z5250012"
yt-dlp --list-formats -v "https://player.vimeo.com/video/728099280?h=911920f3f1&dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/physiology-body-fluids-and-blood/"
yt-dlp --format dash-akfire_interconnect_quic-video-1a84be0c -v "https://player.vimeo.com/video/728099280?h=911920f3f1&dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/physiology-body-fluids-and-blood/"
sh download_all.sh 
yt-dlp --list-formats -v "https://player.vimeo.com/video/729173023?dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/physiology-excitable-tissue-and-neurons/"
yt-dlp --format hls-akfire_interconnect_quic-4270 -v "https://player.vimeo.com/video/729173023?dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/physiology-excitable-tissue-and-neurons/"
yt-dlp --list-formats -v "https://player.vimeo.com/video/729173023?dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/physiology-excitable-tissue-and-neurons/"
yt-dlp --format  hls-akfire_interconnect_quic-4270 -v "https://player.vimeo.com/video/729173023?dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/physiology-excitable-tissue-and-neurons/"
yt-dlp --format hls-akfire_interconnect_quic-4270 -v "https://player.vimeo.com/video/729173023?dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/physiology-excitable-tissue-and-neurons/"
yt-dlp --list-formats -v "https://player.vimeo.com/video/729173023?dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/physiology-excitable-tissue-and-neurons/"
yt-dlp --format hls-fastly_skyfire-4270 -v "https://player.vimeo.com/video/729173023?dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/physiology-excitable-tissue-and-neurons/"
yt-dlp dash-akfire_interconnect_quic-video-ae0ae2c0 -v "https://player.vimeo.com/video/729173023?dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/physiology-excitable-tissue-and-neurons/"
yt-dlp --format dash-akfire_interconnect_quic-video-ae0ae2c0 -v "https://player.vimeo.com/video/729173023?dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/physiology-excitable-tissue-and-neurons/"
yt-dlp --list-formats -v "https://player.vimeo.com/video/729173023?dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/physiology-excitable-tissue-and-neurons/"
yt-dlp --format hls-akfire_interconnect_quic_sep-audio-high-audio -v "https://player.vimeo.com/video/729173023?dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/physiology-excitable-tissue-and-neurons/"
yt-dlp --format dash-akfire_interconnect_quic-video-47c589bf -v "https://player.vimeo.com/video/728513593?h=be8d462e1b&dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/anatomy-muscular-system/"
yt-dlp --list-formats -v "https://player.vimeo.com/video/728517873?h=c06783a5e6&dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/physiology-nervous-system/"
yt-dlp formats hls-akfire_interconnect_quic-5227 -v "https://player.vimeo.com/video/728517873?h=c06783a5e6&dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/physiology-nervous-system/"
yt-dlp --format hls-akfire_interconnect_quic-5227 -v "https://player.vimeo.com/video/728517873?h=c06783a5e6&dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/physiology-nervous-system/"
yt-dlp --list-formats -v "https://player.vimeo.com/video/728517873?h=c06783a5e6&dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/physiology-nervous-system/"
yt-dlp --format dash-akfire_interconnect_quic-video-a76df06c -v "https://player.vimeo.com/video/728517873?h=c06783a5e6&dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/physiology-nervous-system/"
yt-dlp --list-formats -v "https://player.vimeo.com/video/702813044?dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/molecular-medicine-the-molecular-basis-of-immunology/"
yt-dlp --format hls-akfire_interconnect_quic-4039 -v "https://player.vimeo.com/video/702813044?dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/molecular-medicine-the-molecular-basis-of-immunology/"
yt-dlp --list-formats -v "https://player.vimeo.com/video/703647290?dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/anatomy-and-physiology-endocrine-system/"
yt-dlp --format hls-akfire_interconnect_quic-4172 -v "https://player.vimeo.com/video/703647290?dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/anatomy-and-physiology-endocrine-system/"
yt-dlp --list-formats -v "https://player.vimeo.com/video/703675362?dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/molecular-medicine-cancer-part-1/"
yt-dlp --format hls-akfire_interconnect_quic-4069 -v "https://player.vimeo.com/video/703675362?dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/molecular-medicine-cancer-part-1/"
yt-dlp --list-formats -v "https://player.vimeo.com/video/703725468?dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/molecular-medicine-cancer-part-2/"
yt-dlp --list-formats -v "https://player.vimeo.com/video/703711772?dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/physiology-cardiovascular-system/"
yt-dlp --list-formats -v "https://player.vimeo.com/video/703732390?dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/anatomy-respiratory-system/"
yt-dlp --list-formats -v "https://player.vimeo.com/video/703768813?dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/molecular-medicine-cancer-part-3/"
yt-dlp --list-formats -v "https://player.vimeo.com/video/703760488?dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/physiology-renal-system/"
yt-dlp --list-formats -v "https://player.vimeo.com/video/703776461?dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/anatomy-digestive-system/"
yt-dlp --list-formats -v "https://player.vimeo.com/video/703804524?dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/molecular-medicine-bacterial-structures/"
yt-dlp --list-formats -v "https://player.vimeo.com/video/703790358?dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer ""https://seventhstar.co.za/topics/physiology-acid-base-balance/
yt-dlp --list-formats -v "https://player.vimeo.com/video/703811110?dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/anatomy-urinary-system/"
yt-dlp --list-formats -v "https://player.vimeo.com/video/703842772?dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/molecular-medicine-viruses/"
yt-dlp --list-formats -v "https://player.vimeo.com/video/703825480?dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/physiology-nutrition/"
yt-dlp --list-formats -v "https://player.vimeo.com/video/598954771?h=7234cf8821&dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/anatomy-physiology-and-molecular-medicine-mock-test/"
yt-dlp --format hls-akfire_interconnect_quic-4069 -v "https://player.vimeo.com/video/703675362?dnt=1&app_id=122963&controls=1&autoplay=0&api=1" --referer "https://seventhstar.co.za/topics/molecular-medicine-cancer-part-1/"
cd ../
git clone git@github.com:puddletag/puddletag.git
git clone git@github.com:ztimol/mdanalysis.git
l
git clone git@github.com:ztimol/mdanalysis.git
l
cd mdanalysis/
git status
git pull origin develop
python3 -m venv venv
source venv/bin/activate
pip install --help
deactivate
source venv/bin/activate
pip install -U sphinx
sphinx-build --version
rm -r testpage/
pwd
cd ~/tmp/mdanalysis/package/doc/sphinx/source/documentation_pages/
cd ../
l
cd ../
l
sphinx-build -b html source/ build/html
pip install mdanalysis
sphinx-build -b html source/ build/html
pip install msmb_theme
sphinx-build -b html source/ build/html
pip install sphinx_rtd_theme
sphinx-build -b html source/ build/html
pip install pybtex
sphinx-build -b html source/ build/html
pip install sphinx_sitemap
sphinx-build -b html source/ build/html
pip install sphinxcontrib.bibtex
sphinx-build -b html source/ build/html
l
cd build/
l
cd html/
l
pwd
git status
git ../../../../MDAnalysis/core/topologyattrs.py
git checkout  ../../../../MDAnalysis/core/topologyattrs.py
sphinx-build -b html source/ build/html
cd ../
l
sphinx-build -b html source/ build/html
rm -r build/
sphinx-build -b html source/ build/html
git status
git checkout ../../MDAnalysis/core/topologyattrs.py
git checkout source/documentation_pages/core/topologyattrs.rst
git checkout source/documentation_pages/
sphinx-build -b html source/ build/html
git status
git checkout ../../MDAnalysis/core/
deactivate
pip uninstall mdanalysis
pip install mdanalysis
git status
git checkout ../../MDAnalysis/core/topologyattrs.py 
pip uninstall mdanalysis
rm -r ~/tmp/mdanalysis/venv/lib/python3.10/site-packages/MDAnalysis/
pip install mdanalysis
pip install -U mdanalysis
pip install -u mdanalysis
source ../../../venv/bin/activate
pip install -u mdanalysis
pip install -U mdanalysis
sphinx-build -b html source/ build/html
git status
git checkout 2d654aefd
sphinx-build -b html source/ build/html
git status
sphinx-build -b html source/ build/html
git status
git reset --hard HEAD
git status
git checkout develop
git reset --hard HEAD
git status
sphinx-build -b html source/ build/html
git checkout 35248e87e
sphinx-build -b html source/ build/html
git status
git checkout develop
git status
git checkout d73523f93
sphinx-build -b html source/ build/html
git checkout develop
git status
sphinx-build -b html source/ build/html
ln -s ~/tmp/mdanalysis/package/MDAnalysis/core/topologyattrs.py ~/tmp/mdanalysis/venv/lib/python3.10/site-packages/MDAnalysis/core/topologyattrs.py
git status
sphinx-build -b html source/ build/html
git status
git checkout ../../MDAnalysis/
sphinx-build -b html source/ build/html
git status
git checkout ../../MDAnalysis/core/topologyattrs.py
sphinx-build -b html source/ build/html
git checkout ../../MDAnalysis/core/topologyattrs.py
sphinx-build -b html source/ build/html
git checkout ../../MDAnalysis/core/topologyattrs.py
sphinx-build -b html source/ build/html
git status
git checkout  ../../MDAnalysis/core/topologyattrs.py
sphinx-build -b html source/ build/html
git checkout  ../../MDAnalysis/core/topologyattrs.py
sphinx-build -b html source/ build/html
git checkout  ../../MDAnalysis/core/topologyattrs.py
sphinx-build -b html source/ build/html
git status
sphinx-build -b html source/ build/html
git checkout  ../../MDAnalysis/core/topologyattrs.py
sphinx-build -b html source/ build/html
git checkout  ../../MDAnalysis/core/topologyattrs.py
sphinx-build -b html source/ build/html
git checkout  ../../MDAnalysis/core/topologyattrs.py
sphinx-build -b html source/ build/html
git checkout  ../../MDAnalysis/core/topologyattrs.py
sphinx-build -b html source/ build/html
git checkout  ../../MDAnalysis/core/topologyattrs.py
sphinx-build -b html source/ build/html
git checkout  ../../MDAnalysis/core/topologyattrs.py
sphinx-build -b html source/ build/html
pip uninstall sphinx
pip install Sphinx==6.2.1
sphinx-build -b html source/ build/html
sphinx-build --version
git status
cd ..../../
cd ../../
cd ../
rm -r mdanalysis/
mv mdanalysis/ mdanalysis_old
git clone git@github.com:ztimol/mdanalysis.git
cd mdanalysis
l
cd package/
l
deactivate
l ../
python3 -m venv venv
l
source venv/bin/activate 
python3 setup.
python3 setup.py 
pip install -r requirements.txt 
python3 setup.py 
python setup.py install
python3
zt.py
cd MDAnalysis
l
cd ../
python3 run_fix.py 
l
python3 run_fix.py 
pip install -r requirements.txt 
pip uninstall numpy
pip install numpy>=1.22.3
pip install numpy
python3 run_fix.py 
python3 
python3 setup.py install
python3 run_fix.py 
python setup.py build
python setup.py install --user
python3 run_fix.py 
pip install cython
python setup.py build
python setup.py install
python3 run_fix.py 
python3
cd build/lib.linux-x86_64-3.10/
cp ../../run_fix.py .
python3 run_fix.py 
pip install MDAnalysisTests
python3 run_fix.py 
cd ../../
python setup.py build
python setup.py develp[
python setup.py develop
l
python3 run_fix.py 
git status
git checkout MDAnalysis/core/universe.py
git status
python3 run_fix.py 
git status
python3 run_fix.py 
git status
git diff MDAnalysis/core/topologyobjects.py
git status
git add MDAnalysis/core/topologyobjects.py 
git commit -m "#added atom ID sort to topopology object representation"
gitk
git config user.name "Zaheer Timol"
git commit -m "#added atom ID sort to topopology object representation"
gitk
git config user.email "ztimol@gmail.com"
git status
git commit -m "added atom ID sort to topopology object representation"
git status
git push origin develop
pytest --pyargs MDAnalysisTests
git status
python3 run_fix.py 
pytest --pyargs MDAnalysisTests
cd ../
pytest --disable-pytest-warnings --pyargs MDAnalysisTests
cd testsuite/MDAnalysisTests/
l
pytest --disable-pytest-warnings --numprocesses 2
pytest --disable-pytest-warnings
cd ../../
pytest --disable-pytest-warnings
git status
pytest --disable-pytest-warnings
pytest --disable-pytest-warnings --pyargs MDAnalysisTests
l
git status
git diff package/MDAnalysis/core/topologyobjects.py
gitk
git status
git branch -a
cd ../
l
mkdir md
cd md
git clone git@github.com:MDAnalysis/mdanalysis.git
l
cd mdanalysis/
l
cd ../
cd ../mdanalysis/
git status
git checkout .
git status
git checkout -b issue#4181
git status
git push origin issue#4181
git status
git add testsuite/
git commit -m "updated representation checks in tests"
git status
git push origin issue#4181
gitk
git status
cd package/
python3 run_fix.py 
l
git status
python3 run_fix.py 
git status
python3 run_fix.py 
git status
git checkout develop
git branch -D issue#4181
git reset --hard HEAD~1
git push origin HEAD --force
git status
git checkout issue#4181
git status
git branch -D issue#4181
git branch -a
git push origin --delete issue#4181
git checkout -b issue#4181
git status
git diff MDAnalysis
git add MDAnalysis/core/topologyobjects.py 
l
git status
git diff ../testsuite/
git add ../testsuite/
git status
git commit -m "Updated atom ID representation order to match AtomGroup"
git push origin issue#4181
git status
git add ../testsuite/
git commit -m "updated cmap test"
git push origin issue#4181
git status
git add MDAnalysis/core/topologyobjects.py 
git status
git commit -m "updated return repr comment"
git push origin issue#4181
git status
python3 run_fix.py 
vmd -pdb renumbered.pdb 
exit
cd tmp/mdanalysis/package/
l
exit
git clone git@github.com:ztimol/freeCodeCamp.git
git stsatus
cd mdanalysis/
git status
gh pr checkout 4168
git pr checkout 4168
exit
cd /home/timol/C6W/Writeup/latex
git diff
git status
git add .
git commit -m "updated draft"
git push origin draft
exit
git status
git diff AUTHORS
git diff CHANGELOG
git diff MDAnalysis/core/topologyobjects.py
git status
git add AUTHORS CHANGELOG MDAnalysis/core/topologyobjects.py 
git status
git commit -m "updated changelog, authors, and versionchanged"
git pull origin develop
git status
git config pull.rebase false
git pull origin develop
git status
git commit -m "merge"
git status
git push origin issue#4181
gits tatus
git status
git checkout MDAnalysis/core/topologyobjects.py 
git status
exit
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf main.pdf
rm small.pdf 
exit
git status
git add .
git commit -m "updated return repr comment"
git push origin draft
git status
git diff chapters/chapter_7.tex
git status
git add .
git commit -m "updated return repr comment"
git push origin draft
git push origin corrections
git checkout draft
git pull origin draft
git pull origin corrections
git status
git add chapters/
git commit -m "updated return repr comment"
git push orign draft
git push origin draft
git status
git diff chapters/
git status
git checkout l.
git checkout .
git status
git diff
pwd
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf main.pdf
git status
git add .
git commit -m "updated draft"
git push origin draft
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf main.pdf
git status
git add .
git commit -m "updated draft"
git push origin draft
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf main.pdf
exit
cd /home/timol/C6W/Writeup/latex/chapters
l
git diff chapter_9.
git diff chapter_9.tex
git diff chapter_4.tex
exit
cd /home/timol/C6W/Writeup/latex/chapters 
git diff chapter_1.
git diff chapter_1.tex
git checkout chapter_1.tex
git status
git add chapter_10.tex 
git commit -m "updated draft"
git push origin draft
exit
cd tmp/mdanalysis/
git status
git branch
git pull origin develop
git push origin issue#4181 
exit
cd tmp/mdanalysis/
git stastus
git stsatus
git status
git pull origin develop
git status
gitk
git status
git diff package/
exit
cd tmp/mdanalysis/
git sttatus
git status
git diff package/CHANGELOG
git diff package/MDAnalysis/core/topologyobjects.py
git status
git add package/CHANGELOG
git add package/MDAnalysis/core/topologyobjects.py
git status
git commit -m "updated changelog and docstring"
git push origin issue#4181
exit
git status
git pull origin develop
git status
git checkout .
git reset --hard HEAD
git status
git pull origin develop
git status
git reset --hard HEAD
exit
cd C6W/Writeup/
l
cd latex/
pdftotext Updated_conclusions.pdf Updated_conclusions.txt
exit
git status
git add .
git commit -m "updated changelog and docstring"
git push origin corrections
git status
git add .
git commit -m "updated changelog and docstring"
git push origin corrections
git status
git add .
git commit -m "updated changelog and docstring"
git push origin corrections
git status
git add .
git commit -m "updated draft"
git push origin draft
git push origin corrections
git status
git add .
git commit -m "updated draft"
git push origin corrections
git add .
git commit -m "updated draft"
git push origin corrections
git add .
git commit -m "updated draft"
git push origin corrections
exit
free -m | awk 'NR==2{printf "Memory Usage: %s/%sMB (%.2f%%)\n", $3,$2,$3*100/$2 }'
df -h | awk '$NF=="/"{printf "Disk Usage: %d/%dGB (%s)\n", $3,$2,$5}'
top -bn1 | grep load | awk '{printf "CPU Load: %.2f\n", $(NF-2)}' 
exot
exit
docker ps
docker run -i -t alpine /bin/bash
sudo systemctl enable docker.socket
sudo systemctl start docker.socket
docker run -i -t alpine /bin/bash
docker run -i -t alpine
exit
df -BTB --tail -1
df -BTB --total | tail -1
prinf{df -BTB --total | tail -1}
prinf{"df -BTB --total | tail -1"}
prinf %sTotal disk df -BTB --total | tail -1"


prinf %sTotal disk df -BTB --total | tail -1"

exit

exit
printf "Total disk %s " $(df -BTB --total | tail -1)
exit
prinf "Total disk %s" df -BTB --total | tail -1
printf "Total disk %s" df -BTB --total | tail -1
printf "Total disk %s" $(df -BTB --total | tail -1)
printf "Total disk %s " $(df -BTB --total | tail -1)
printf "Total disk " $(df -BTB --total | tail -1)
printf "Total disk %s " $(df -BTB --total | tail -1)
df -BTB --total | tail -1
df --total | tail -1
TOTAL=$(df --total | tail -1)
$TOTAL
echo $TOTAL
TOTAL=$(df --total | awk '{ printf %tail -1}')
TOTAL=$(df --total |tail -1)
echo $TOTAL
TOTAL=$(df --total | tail -1 | awk '{printf $2/1024/12024 }')
echo $TOTAL
TOTAL=$(df --total | tail -1 | awk '{printf $2/1024/12024 }'T)
echo $TOTAL
echo Total disk=$TOTAL
df -h
grep MemTotal /proc/meminfo | awk '{print $2}'  
MemTotal /proc/meminfo | awk '{print $2}'  
TOTAL=$(df --total | tail -1 | awk '{printf $2/1024/12024 }'T)
echo Total disk=$TOTAL
awk '/MemTotal/ {printf "%.3f\n",$2/1024}' /proc/meminfo 
awk '/MemTotal/ {printf "%.3\n",$2/1024}' /proc/meminfo 
awk '/MemTotal/ {printf "%.3f\n",$2/1024}' /proc/meminfo 
awk '/MemTotal/ {printf "%f\n",$2/1024}' /proc/meminfo 
awk '/MemTotal/ {printf "%.0f\n",$2/1024}' /proc/meminfo 
df --total | tail -1 | awk '{printf $2/1024/12024 }'T
df --total | tail -1
df --total
exit
git status
rm package/renumbered.pdb 
rm package/run_fix.py 
cd package/
git status
git checkout develop
git pull origin develop
source venv/bin/activate
python3 test.py 
vmd ghostAtoms.xyz 
vmd methane.data 
vmd
deactivate
cd ~/tmp/
source 
source ~/.venv/bin/activate
python3
deactivate
mkdir bo_test
cd bo_test/
python3 -m venv venv
source venv/bin/activate
pip install django
pip install djangorestframework
python3
l
django-admin startproject base_app .
l
rm -r manage.py base_app/
django-admin startproject core .
l
pip install -r requirements.txt 
rm -r core/ manage.py 
pip install -r requirements.txt 
django-admin startproject core .
rm -r core/ manage.py 
l
django-admin startproject config .
python3 manage.py startapp core
cd co
cd core/
mkdir models
cd models/
cd ../
python3 manage.py makemigrations
python3 manage.py migrate
python3 manage.py makemigrations
python3 manage.py migrate
python3 manage.py runserver
python3 manage.py shell
bash test.sh 
docker build Dockerfile 
docker build ./Dockerfile 
docker build ./Dockerfile .
docker build -f Dockerfile
docker build -f Dockerfile .
bash test.sh 
docker build -f Dockerfile .
bash test.sh 
docker build -f Dockerfile .
bash test.sh 
rm Dockerfile 
bash test.sh 
rm Dockerfile 
bash test.sh 
rm Dockerfile 
bash test.sh 
docker build -f Dockerfile .
pip install numpy==1.25.1 scipy==1.11.1 pandas==2.0.3
exit
git diff-tree
git log
git diff-tree 1797afbb1e9e3b4bf22c687f02bbb35c4a409dcf
git diff-tree 1b7d322d3
git diff-tree 1b7d322d3 -r
git show --name-only 1797afbb1e9e3b4bf22c687f02bbb35c4a409dcf
git log
exit
cd tmp/bo_test/
cd ../mdanalysis/
git show --name-only 1797afbb1e9e3b4bf22c687f02bbb35c4a409dcf
git diff-tree --no-commit-id --name-only -r 1797afbb1e9e3b4bf22c687f02bbb35c4a409dcf
git diff-tree --no-commit-id --name-only -r da2d04c899e5aeb65a6e8a3164b32b05ae6d22e2
git diff-tree -r da2d04c899e5aeb65a6e8a3164b32b05ae6d22e2
git diff-tree da2d04c899e5aeb65a6e8a3164b32b05ae6d22e2
ssh pi@192.168.1.29
exit
cd tmp/mdanalysis/
git status
git pull origin develop
git branch -a
git checkout issue#4181
git status
git pull origin develop
git status
git diff
git status
git add package/CHANGELOG 
git status
git commit -m "merge"
git push origin issue#4181
exit
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile="Application portfolio.pdf" small.pdf
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf "Application portfolio.pdf"
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf Application_Portfolio.pdf 
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/screeb -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf Application_Portfolio.pdf 
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/screen -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf Application_Portfolio.pdf 
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/printer -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf Application_Portfolio.pdf 
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/ebook -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf Application_Portfolio.pdf 
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf Application_Portfolio.pdf 
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/ebook -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf Application_Portfolio.pdf 
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/sreen -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf Application_Portfolio.pdf 
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/screen -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf Application_Portfolio.pdf 
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/screen -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf UCT_Transcript_Certificates_Certified.pdf 
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/ebook -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf UCT_Transcript_Certificates_Certified.pdf 
cd tmp/mdanalysis/
git status
git pull origin develop
git status
git push origin issue#4181 
exit
cd tmp/
git status
cd mdanalysis/
git status
exit
ssh pi@192.168.1.29
exit
ssh pi@192.168.1.29
exit
htop
source ~/.venv/bin/activate
python3 energies_from_pmf.py 
exit
source ~/.venv/bin/activate
python3 energies_from_pmf.py 
exit
htop
exit
htop
exit
htop
exi
exit
cd tmp/mdanalysis/
git status
git pull origin develop
git status
git reset --hard HEAD
exit
git status
git pull origin develop
git status
git commit -m "merge"
git push origin issue#4181
git status
git pull origin issue#4181
git status
git commit
git commit -m "merge"
git status
git push origin issue#4181
exit
cd /home/timol/C6W/Writeup/latex 
git diff
git status
git checkout .
exit
python3 -m venv venv
npx create-react-app my-app
npm install -g npm@9.8.1
npm install --location=global npm@9.8.1
npm install -g ter
npm install -g tern
sudo npm install -g tide typescript prettier
sudo npm install -g eslint babel-eslint eslint-plugin-react eslint-plugin-jsx eslint-plugin-flowtype eslint-plugin-react-app
exit
cd studies/applications/med_school/
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/ebook -dNOPAUSE -dQUIET -dBATCH -sOutputFile=IB_School_Leaving_Certificate_certified_2023.pdf IB_School_Leaving_Certificate_certified_2023_small.pdf
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=IB_School_Leaving_Certificate_certified_2023_small.pdf IB_School_Leaving_Certificate_certified_2023.pdf
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=UCT_Certificates_Transcript_certified_2023_small.pdf UCT_Certificates_Transcript_certified_2023.pdf
exit
nvm use stable --silent
npm install -g tern
cd ../../
cd ../
l
mkdir opencraft
cd opencraft/
python3 -m venv venv
source venv/bin/activate
exit
caja .
git status
git push origin corrections
git status
git checkout draft
git pull origin corrections
git push origin draft
git checkout corrections
git branch -a
git checkout -b update
git status
git add abstract.tex 
git commit -m "updated abstract"
git add .
git commit -m "updated chapters 8 and 9"
git push origin draft
git add .
git commit -m "updated draft"
git push origin update
git status
git add .
git commit -m "updated draft"
git push origin update
git status
git add .
git commit -m "updated draft"
git push origin update
git status
git add .
git commit -m "updated draft"
git push origin update
git status
git add .
git commit -m "updated draft"
git push origin update
git status
git add .
git commit -m "updated draft"
git push origin update
gitk
git status
git add .
git commit -m "updated draft"
git push origin update
git status
git add chapters/
rm draft_versions/comments.*
git status
git commit -m "updated draft"
git status
git push origin update
git status
rm draft_versions/comments*
l
git status
git add chapters/
git commit -m "updated draft"
git push origin update
git status
git add .
git commit -m "updated draft"
git push origin update
git status
rm draft_versions/comments.org 
rm draft_versions/comments.md
git statusg
git status
git add chapters/
git commit -m "updated draft"
git push origin update
git status
git add .
git commit -m "updated draft"
git push origin update
git status
git add chapters/
git commit -m "updated draft"
git push origin update
git status
git add .
git commit -m "updated draft"
git push origin update
git status
git add chapters/
git commit -m "updated draft"
git push origin update
git status
git add chapters/chapter_7.tex 
git commit -m "updated draft"
git push origin update
gitk
git status
git add chapters/chapter_7.tex 
git status
git add .
git commit -m "updated draft"
git push origin update
git status
git add chapters/
git commit -m "updated draft"
git push origin update
git status
git add chapters/
git commit -m "updated draft"
git push origin update
git status
git add .
git commit -m "updated draft"
git push origin update
git status
git add chapters/
git commit -m "updated draft"
git push origin update
git status
git add chapters/chapter_8.tex 
git commit -m "updated draft"
git push origin update
git commit -m "updated draft"
git push origin update
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf main.pdf
git add chapters/
git commit -m "updated draft"
git push origin update
git status
git add chapters/
git commit -m "updated draft"
git push origin update
git reset draft_versions/ClearWriting.txt
git checkout draft_versions/ClearWriting.txt
git status
git add chapters/
git commit -m "updated draft"
git push origin update
git status
git add chapters/
git commit -m "updated draft"
git push origin update
git status
git add .
git commit -m "updated draft"
git push origin update
git status
git add .
git commit -m "updated draft"
git push origin update
git status
git add chapters/
git commit -m "updated draft"
git push origin update
git status
git add .
git commit -m "updated draft"
git push origin update
git add .
git commit -m "updated draft"
git push origin update
git status
git add .
git commit -m "updated draft"
git push origin update
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf main.pdf
git status
git add .
git commit -m "updated draft"
git push origin update
git status
git add .
git commit -m "updated draft"
git push origin update
git checkout corrections
git checkout update
git status
git stqatus
git status
git add .
git commit -m "updated draft"
git push origin update
git status
git add .
git commit -m "updated draft"
git push origin update
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf main.pdf
git status
command dirs
git add .
git commit -m "updated draft"
git push origin update
git status
git add chapters/
git commit -m "updated draft"
git push origin update
git status
git add .
git commit -m "updated draft"
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf main.pdf
git status
git add .
git commit -m "updated draft"
git push origin update
git status
git add .
git commit -m "updated draft"
git push origin update
git satus
git status
git add .
git commit -m "updated draft"
git push origin update
git status
git add .
git commit -m "updated draft"
git push origin update
git status
git add chapters/
git commit -m "updated draft"
git push origin update
git status
git add .
git commit -m "updated draft"
git push origin update
git status
git add .
git commit -m "updated draft"
git push origin update
git status
git add .
git commit -m "updated draft"
git push origin update
git status
git add .
git commit -m "updated draft"
git push origin update
git status
git add .
git commit -m "updated draft"
git push origin corrections
git status
git add .
git commit -m "updated draft"
git push origin corrections
git status
git diff appendices/appendix_b.tex 
pwd
git status
git add chapters/ appendices/
git commit -m "updated draft"
git push origin corrections
git status
git add .
git commit -m "updated draft"
git push origin corrections
git status
git add .
git commit -m "updated draft"
git push origin corrections
git push origin update
git status
git add .
git commit -m "updated draft"
git push origin update
git status
git add .
git commit -m "updated draft"
git push origin update
git status
git add .
git commit -m "updated draft"
git push origin update
git status
git add .
git commit -m "updated draft"
git push origin update
git status
git add .
git commit -m "updated draft"
git push origin update
gitk
exit
vmd -psf 7a_s_flexneri_6ru.psf -dcd 7a_s_flexneri_6ru_ring_restrained_0-1000ns.dcd 
cd ../../standard/trajectories/
l
vmd -psf 7a_s_flexneri_6ru.psf -dcd 7a_s_flexneri_6ru_0-1000ns.dcd 
exit
cd latest
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/printer -dNOPAUSE -dQUIET -dBATCH -sOutputFile=UCT_Certificates_Transcript_certified.pdf ../UCT_Certificates_Transcript_certified_2023.pdf 
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/printer -dNOPAUSE -dQUIET -dBATCH -sOutputFile=UCT_Certificates_Transcript_certified.pdf ../../UCT_Certificates_Transcript_certified_2023.pdf 
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/ebook -dNOPAUSE -dQUIET -dBATCH -sOutputFile=UCT_Certificates_Transcript_certified.pdf ../../UCT_Certificates_Transcript_certified_2023.pdf 
exit
cd studies/applications/med_school/nmu/latest/
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/ebook -dNOPAUSE -dQUIET -dBATCH -sOutputFile=IB_School_Leaving_Certificate_certified_2023.pdf ../../IB_School_Leaving_Certificate_certified_2023.pdf 
exit
git status
caja .
git status
git add .
git commit -m "updated draft"
git push origin update
git status
git add .
git commit -m "updated draft"
git push origin update
exit
l
source venv/bin/activate
python3 main.py 
p
python3 main.py 
cd ../feenix/
cd ../naked_insurance/
python3 -m venv venv
python sample.py 
cd ../
exit
caja .
git status
git add .
git commit -m "updated draft"
git push origin update
git status
git add .
git commit -m "updated draft"
git push origin update
l
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf main.pdf
git status
git add .
git commit -m "updated draft"
git push origin update
git status
git add .
git commit -m "updated draft"
git push origin update
git status
git diff
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf main.pdf
exit
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf main.pdf
exit
sudo systemctl start docker.socket
sudo systemctl enable docker.socket
exit
sudo systemctl disable docker.socket
sudo systemctl stop docker.socket
exit
docker-compose up -d
mkdir baserow_data
docker-compose up -d
l
docker-compose up -d
docker ps
docker stop 240278bd1bed
exit
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf main.pdf
git status
git add .
git commit -m "updated draft"
git push origin update
exit
ssh pi@192.168.1.29
exit
source venv/bin/activate
python3 main.py 
cd ../
mv opencraft/ ../Music/
mkdir opencraft
cd opencraft/
deactivate
python3 -m venv ven
python3 -m venv venv
source venv/bin/activate
python3 main.py 
exit
ssh pi@192.168.1.29
xit
exit
caja .
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf main.pdf
exit
sudo apt install gmx
sudo apt search gromacs
sudo apt install gromacs
exit
django-admin startproject core .
exit
python3 manage.py runserver
source venv/bin/activate
python3 manage.py runserver
git status
git add config/
exit
source ../../../../venv/bin/activate
pip install -r ../../../../requirements.txt 
git status
git ../../../../requirements.txt
git checkout ../../../../requirements.txt
pip install mdanalysis
exit
n -s ~/tmp/mdanalysis/package/MDAnalysis/core/topologyattrs.py ~/tmp/mdanalysis/venv/lib/python3.10/site-packages/MDAnalysis/core/topologyattrs.py
n -s ~/tmp/mdanalysis/package/MDAnalysis/topology/tpr/utils.py ~/tmp/mdanalysis/package/venv/lib/python3.10/site-packages/MDAnalysis/topology/tpr/utils.py 
ln -s ~/tmp/mdanalysis/package/MDAnalysis/topology/tpr/utils.py ~/tmp/mdanalysis/package/venv/lib/python3.10/site-packages/MDAnalysis/topology/tpr/utils.py 
rm ~/tmp/mdanalysis/package/venv/lib/python3.10/site-packages/MDAnalysis/topology/tpr/utils.py 
rm ~/tmp/mdanalysis/package/venv/lib/python3.10/site-packages/MDAnalysis/topology/tpr/obj.py 
ln -s ~/tmp/mdanalysis/package/MDAnalysis/topology/tpr/utils.py ~/tmp/mdanalysis/package/venv/lib/python3.10/site-packages/MDAnalysis/topology/tpr/utils.py 
ln -s ~/tmp/mdanalysis/package/MDAnalysis/topology/tpr/obj.py ~/tmp/mdanalysis/package/venv/lib/python3.10/site-packages/MDAnalysis/topology/tpr/obj.py
exit
cd package/
source venv/bin/activate
pip install --upgrade MDAnalysisTests
cd ../
cd testsuite/MDAnalysisTests/
pytest  --disable-pytest-warnings
pytest  topology/test_tprparser.py --disable-pytest-warnings
git status
pytest  topology/test_tprparser.py --disable-pytest-warnings
git status
git checkout topology/test_tprparser.py
git status
git push origin issue#4224
pytest topology/test_tprparser.py --disable-pytest-warnings
pip uninstall mdanalysis
pytest topology/test_tprparser.py --disable-pytest-warnings
pip install -r ../../package/requirements.txt 
pytest topology/test_tprparser.py --disable-pytest-warnings
pytest topology/test_tprparser.py::TPRAttrs --disable-pytest-warnings
pytest topology/test_tprparser.py::TestTPR --disable-pytest-warnings
gmx dump -s data/adk_oplsaa.tpr > data/adk_oplsaa.data
pytest topology/test_tprparser.py::TestTPR --disable-pytest-warnings
python3 ../../package/md.py 
pytest topology/test_tprparser.py::TestTPR --disable-pytest-warnings
pytest topology/test_tprparser.py --disable-pytest-warnings
python3 ../../package/md.py 
pytest topology/test_tprparser.py --disable-pytest-warnings
git status
git diff chapters/chapter_9.tex
git status
git add .
git commit -m "updated draft"
git status
git push origin update
git status
git add .
git commit -m "updated draft"
git push origin update
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf main.pdf
l
git status
exit
cd C6W/Writeup/latex/
cd ../draft_versions/
pdftotext Thesis_Draft_v11.pdf Thesis_Draft_v11.txt
emacs
exit
ssh pi@192.168.1.29
exit
ssh pi@192.168.1.29
exit
ssh pi@192.168.1.29
exit
cd studies/CarbAnalysis/
l
cd web_app/
l
yarn start
exit
git status
git checkout l
git checkout .
caja .
cd tmp/
CarbBuilder2.exe -h
CarbBuilder2.exe -i  "aDGlc(1->3)aDGlc" -all -o Shigella_Y_RU6
l
mv Shigella_Y_RU6.pdb glc.pdb
vmd glc.pdb 
reset
CarbBuilder2.exe -i  "aDGlc(1->3)aDGlc" -all -d dihedrals_extra.txt -o glc.pdb
vmd glc.pdb 
CarbBuilder2.exe -i  "aDGlc(1->3)aDGlc" -all -d dihedrals_extra.txt -o glc.pdb
rm glc.pdb
rm glc.pdb.pdb 
CarbBuilder2.exe -i  "aDGlc(1->3)aDGlc" -all -d dihedrals_extra.txt -o glc
rm glc
CarbBuilder2.exe -i  "aDGlc(1->3)aDGlc" -all -d dihedrals_extra.txt -o glc
rm glc
CarbBuilder2.exe -i  "aDGlc(1->3)aDGlc" -all -d dihedrals_extra.txt -o glc
vmd -pdb glc.pdb 
CarbBuilder2.exe -i  "aDGlc(1->3)aDGlc" -all -d dihedrals_extra.txt -o glc
vmd glc.pdb 
exit
ssh pi@192.168.1.29
exit
ssh pi@192.168.1.29
exit
ssh pi@192.168.1.29
exit
ssh pi@192.168.1.29
htop
ssh pi@192.168.1.29
exit
ssh pi@192.168.1.29
exit
ssh pi@192.168.1.29
exit
ssh pi@192.168.1.29
exit
cd tmp/
CarbBuilder2.exe -i  "aDGlc(1->3)aDGlc" -all -d dihedrals_extra.txt -o glc
vmd -pdb glc.pdb 
CarbBuilder2.exe -i  "aDGlc(1->3)aDGlc" -all -d dihedrals_extra.txt -o glc
vmd -pdb glc.pdb 
exitr
exit
git status
git add .
git commit -m "updated draft"
git push origin update
git status
git add ../
git status
git add .
git status
git commit -m "updated draft"
git push origin update
git status
git add .
git commit -m "updated draft"
git push origin update
git status
git add ../
git commit -m "updated draft"
git push origin update
git status
git add .
git commit -m "updated draft"
git push origin update
git status
git add ../
git status
git commit -m "updated draft"
git push origin draft
git push origin update
git status
git add 
git add .
git commit -m "updated draft"
git status
git push origin update
git status
git add 
git add .
git commit -m "updated draft"
git push origin update
git status
git add .
git commit -m "updated draft"
git push origin update
git status
git add .
git commit -m "updated draft"
git push origin update
git status
git add ../
git status
git commit -m "updated draft"
git push origin update
git status
git add .
git commit -m "updated draft"
git push origin update
git status
git add .
git commit -m "updated draft"
git push origin update
git status
git add .
git commit -m "updated draft"
git push origin update
git status
git add .
git commit -m "updated draft"
git push origin update
git status
git add .
git commit -m "updated draft"
git push origin update
git status
git add .
git commit -m "updated draft"
git push origin update
git status
git add chapter_2.tex 
git status
git add .
git commit -m "updated draft"
git push origin update
git status
git add .
git commit -m "updated draft"
git push origin update
git status
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf main.pdf
l
rm small.pdf 
cd ../
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf main.pdf
exit
git status
git add .
git commit -m "updated draft"
git push origin update
git status
git add .
git commit -m "updated draft"
git push origin update
git status
git add .
git commit -m "updated draft"
git push origin update
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf main.pdf
exit
ssh pi@192.168.1.29
exit
ssh pi@192.168.1.29
exit
ssh pi@192.168.1.29
xit
exit
ssh pi@192.168.1.29
exit
ssh pi@192.168.1.29
exit
ssh pi@192.168.1.29
exit
ssh pi@192.168.1.29
exit
ssh pi@192.168.1.29
exit
XDG_CURRENT_DESKTOP=GNOME gnome-control-center
ssh pi@192.168.1.29
exit
ssh pi@192.168.1.29
exit
ssh pi@192.168.1.29
xit
exit
ssh pi@192.168.1.29
exit
ssh pi@192.168.1.29
exit
git status
cd ../../
cd ../
l
cd app/sapp_transmission_pricing_app/
l
git status
git git diff README.md
git diff README.md
l
cd ../
l
cd ../
l
cd ../
l
cd sapp_transmission_study/app/sapp_transmission_pricing_app/app/
exit
ssh pi@192.168.1.29
~
ssh pi@192.168.1.29
exit
ssh pi@192.168.1.29
exit
git status
git checkout prd
git branch -D dev
git checkout -b dev
git pull origin dev
gitk
cd ../
rm -r Leakage%20Operations/
sudo rm -r Leakage%20Operations/
git clone thameswater@vs-ssh.visualstudio.com:v3/thameswater/Data%20Factory%20-%20Default/Leakage%20Operations
git status
git checkout prd
cd Leakage%20Operations/
git checkout prd
git pull origin prod
git pull origin prd
gitk
git checkout prd
gitk 
git status
cd ../
git status
l
mv 'Leakage%20Operations/' lops
cd ../../C6W/Writeup/latex/
caja .
git clone https://thameswater.visualstudio.com/Data%20Factory%20-%20Default/_git/Leakage%20Operations
git clone thameswater@vs-ssh.visualstudio.com:v3/thameswater/Data%20Factory%20-%20Default/Leakage%20Operations
git status
cd Leakage%20Operations/
git status
git pull origin dev
git log
git pull origin prd
git status
gitk
git log
gitk
git prd
git checkout prd
gitk
cd ../
cd Leakage%20Operations/
git status
git pull origin dev
gitk
git status
git checkout dev
gitk
cd ../../../C6W/Writeup/latex/
git status
git diff
git status
git diff 
it status
git add main.tex 
git commit -m "updated draft"
git push origin update
git status
git push origin update
sudo snap refresh
sudo shutdown -h now
ssh pi@192.168.1.29
cd work/exploreai/NextJS-Sample/
[200~npx create-next-app@latest~
npx create-next-app@latest~
l
npx create-next-app@latest
l
npx create-next-app@latest
git status
git checkout .
git status
git reset --hard HEAD
git status
git add nextjs_sample_app/
git status
git reset --hard HEAD
git status
l
npx create-next-app@latest
git status
git add nextjs_sample_app/
git status
git restore --staged nextjs_sample_app/
exit
cd /home/timol/work/exploreai
cd NextJS-Sample/
l
npx create-next-app@latest
git status
git add .
git status
git commit -m "switch to ts"
git push origin main
m install --save-dev --save-exact prettier
npx install --save-dev --save-exact prettier
npm install --save-dev --save-exact prettier
node --eval "fs.writeFileSync('.prettierrc','{}\n')"
npm install --save-dev eslint-config-prettier
cd src
l
cd nextjs_sample_app/
cd src/
git status
cd ../../
git status
exit
git status
git checkout .
cd ../
cd ../../../work/exploreai/
git status
l
git clone thameswater@vs-ssh.visualstudio.com:v3/thameswater/Data%20Factory%20-%20Default/User%20Experience%20-%20SWC 
mv User%20Experience%20-%20SWC/ swc
cd swc/
l
cd client/swc-swe/
cd ../
cd ../../
mkdir NextJS-Sample
cd NextJS-Sample/
create-next-app@latest
yarn create-next-app@latest
l
npx create-next-app@latest
cd ../
mv NextJS-Sample/ oNextJS-Sample/
git clone
git clone git@github.com:ThamesWater/NextJS-Sample.git
cd NextJS-Sample/
mv ../oNextJS-Sample/* .
cd ../
rm -r oNextJS-Sample/
cd NextJS-Sample/
git status
npx create-next-app@latest
l
rm -r nextjs_sample
cd nextjs_sample_app/
l
git status
cd ../
git status
git add .
git status
git add .
git status
git restore --staged nextjs_sample_app/package-lock.json
git status
cd ../
cd NextJS-Sample/
rm -r nextjs_sample_app/
git status
git add .
git status
git commit -m "initial commit"
git config user.name "Zaheer"
git commit -m "initial commit"
git config user.email "."
git commit -m "initial commit"
git status
git checkout -b dev
git status
git push origin dev
git chekout main
git checkout main
git push origin main
cd ../
pwd
cd NextJS-Sample/
git status
l
git reset --hard HEAD
git status
rm -r node_modules/ package-lock.json package.json 
cd nextjs_sample_app/
npm install --save-dev --save-exact prettier
git status
node --eval "fs.writeFileSync('.prettierrc','{}\n')"
git status
rm ../.prettierrc 
npm install --save-dev eslint-config-prettier
git status
git add .
git commit -m "add prettier"
git status
rm ../.git/gc.log 
git status
git commit -m "add prettier"
git status
git add .
git commit -m "add prettier"
git push origin main
l
cd src/
npx prettier . --write
git status
git diff app/page.tsx 
git status
git add ../
git commit -m "prettier format"
git prine
git prune
git status
git push origin main
mv app ../
l
cd ../
l
rm -r src
cd ../
l
cd ../
exit
cd work/exploreai/NextJS-Sample/
l
cd nextjs_sample_app/
l
cd ../
git status
mv .git/ nextjs_sample_app/
mv README.md nextjs_sample_app/
git status
cd nextjs_sample_app/
git status
cd ../../
mv NextJS-Sample/nextjs_sample_app/ .
l
rm -r NextJS-Sample/
git status
cd nextjs_sample_app/
git status
git add .
git status
git commit -m "change dir structure"
git push origin main
npm run dev
next dev
npm run dev
exit
ssh pi@192.168.1.29
exit
ssh pi@192.168.1.29
exit
ssh pi@192.168.1.29
sudo killall caja
exit
ssh pi@192.168.1.148
ssh timol@192.168.1.148
~,
~.
exit
ssh timol@192.168.1.148
ssh timol@192.168.1.29
ssh pi@192.168.1.29
ping 192.168.1.29
cd Downloads/
sudo chmod +x unetbootin-linux64-702.bin 
./unetbootin-linux64-702.bin
sudo ./unetbootin-linux64-702.bin
sudo apt install mtools 
sudo ./unetbootin-linux64-702.bin
exit
git config --global --unset-all user.email
git status
git push origin update
git config --unset-all user.email
git push origin update
git status
git add .
git commit -m "updated draft
"
git push origin draft
git push origin update
git status
git commit -m "updated draft"
git config user.name "Zaheer"
git push origin update
git commit -m "updated draft"
git config user.email "."
git push origin update
git commit -m "updated draft"
git push origin update
git status
git add .
git commit -m "updated draft"
git push origin update
git status
gi status
git status
git add .
git commit -m "updated draft"
git push origin update
git status
git add .
git commit -m "updated draft"
git push origin update
git status
git add .
git commit -m "updated draft"
git push origin update
git status
git add .
git commit -m "updated draft"
git push origin update
git status
git add .
git commit -m "updated draft"
git push origin update
git status
git add .
git commit -m "updated draft"
git push origin update
git status
git add .
git commit -m "updated draft"
git push origin update
git status
git add .
git commit -m "updated draft"
git push origin update
git status
git add .
git commit -m "updated draft"
git push origin update
git status
git add .
git commit -m "updated draft"
git push origin update
git status
git branch -a
git checkout -b restructure
git status
git add .
git commit -m "updated draft"
git push origin restructure
git status
git add .
git commit -m "updated draft"
git push origin restructure
git branch
git checkout corrections
git status
git checkout restructure
git status
git add .
git commit -m "updated draft"
git push origin restructure
git status
git add .
git commit -m "updated draft"
git push origin restructure
git status
exit
cd /opt/Mo
cd /opt/plexmedia/Movies/
l
rm -r 'Everything Everywhere All At Once (2022) [1080p] [WEBRip] [5.1] [YTS.MX]'/ Violent.Night.2022.1080p.MA.WEBRip.DDP5.1.Atmos.x264-FLUX/
cd ../TV\ Shows/
l
rm -r ./*
df -h
cd ../../
l
audo apt uninstall android-studio
sudo apt uninstall android-studio
sudo apt remove android-studio
sudo atp autoremove
sudo apt autoremove
sudo apt remove abiword
df -h
sudo apt autoremove
cd Downloads/
sudo chmodx +x unetbootin-linux64-702.bin 
sudo chmod +x unetbootin-linux64-702.bin 
sudo ./unetbootin-linux64-702.bin 
exit
ssh timol@192.168.1.148
ssh-keygen -f "/home/timol/.ssh/known_hosts" -R "192.168.1.148"
ssh timol@192.168.1.148
exit
git status
git add .
git commit -m "updated draft"
git push origin restructure
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf main.pdf
curl 'https://ap-euw-dev-ux-disl-serv.azurewebsites.net/dpdisl/point_validation/?tag=ZSUHILZZ_FLOW_C&start_date=2023-09-13%2000%3A00%3A00&end_date=2023-09-22%2023%3A59%3A59'   -H 'Accept: */*'   -H 'Accept-Language: en-GB,en-US;q=0.9,en;q=0.8'   -H 'Authorization: Bearer eyJ0eXAiOiJKV1QiLCJhbGciOiJSUzI1NiIsIng1dCI6Ii1LSTNROW5OUjdiUm9meG1lWm9YcWJIWkdldyIsImtpZCI6Ii1LSTNROW5OUjdiUm9meG1lWm9YcWJIWkdldyJ9.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.lHzGBUA9_MsK0lJWBnQG9ha1WAGrVFksliPPwO0lqKO65ZEdB32rh3j_W35EHnFTsSoI3OHtCqLJGI4griofDt762SV8uZfbFjlPmgrvJM6wthA9WBZ0V8UmhEnZOnrRyM80wCl65x1aJiTgxePTWG3AX-WZrSz3W81NI9t7al-mdyl6MyUBPyYeflohJnm7bbrLzm2P8xauHXvKVlPcCEUY-wJjU6lPWg5gDDiLJqMHWQcvUYLzWS3Jg8z4eanBkOFX2StOEYWRMXvm8UzDY5gdpap5bjfo8oYI0dGdcDy5eEE_8SuxCPHLn8We0p0-2REGGI2mW80qXxXVVnmKPw'   -H 'Connection: keep-alive'   -H 'Content-type: application/json;charset=UTF-8'   -H 'Origin: http://localhost:3000'   -H 'Referer: http://localhost:3000/'   -H 'Sec-Fetch-Dest: empty'   -H 'Sec-Fetch-Mode: cors'   -H 'Sec-Fetch-Site: cross-site'   -H 'Strict-Transport-Security: max-age=63072000; includeSubDomains; preload'   -H 'User-Agent: Mozilla/5.0 (Macintosh; Intel Mac OS X 10_15_7) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/116.0.0.0 Safari/537.36'   -H 'sec-ch-ua: "Chromium";v="116", "Not)A;Brand";v="24", "Google Chrome";v="116"'   -H 'sec-ch-ua-mobile: ?0'   -H 'sec-ch-ua-platform: "macOS"'   --compressed
curl 'https://ap-euw-dev-ux-disl-serv.azurewebsites.net/dpdis/point_validation/?tag=ZSUHILZZ_FLOW_C&start_date=2023-09-13%2000%3A00%3A00&end_date=2023-09-22%2023%3A59%3A59'   -H 'Accept: */*'   -H 'Accept-Language: en-GB,en-US;q=0.9,en;q=0.8'   -H 'Authorization: Bearer eyJ0eXAiOiJKV1QiLCJhbGciOiJSUzI1NiIsIng1dCI6Ii1LSTNROW5OUjdiUm9meG1lWm9YcWJIWkdldyIsImtpZCI6Ii1LSTNROW5OUjdiUm9meG1lWm9YcWJIWkdldyJ9.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.lHzGBUA9_MsK0lJWBnQG9ha1WAGrVFksliPPwO0lqKO65ZEdB32rh3j_W35EHnFTsSoI3OHtCqLJGI4griofDt762SV8uZfbFjlPmgrvJM6wthA9WBZ0V8UmhEnZOnrRyM80wCl65x1aJiTgxePTWG3AX-WZrSz3W81NI9t7al-mdyl6MyUBPyYeflohJnm7bbrLzm2P8xauHXvKVlPcCEUY-wJjU6lPWg5gDDiLJqMHWQcvUYLzWS3Jg8z4eanBkOFX2StOEYWRMXvm8UzDY5gdpap5bjfo8oYI0dGdcDy5eEE_8SuxCPHLn8We0p0-2REGGI2mW80qXxXVVnmKPw'   -H 'Connection: keep-alive'   -H 'Content-type: application/json;charset=UTF-8'   -H 'Origin: http://localhost:3000'   -H 'Referer: http://localhost:3000/'   -H 'Sec-Fetch-Dest: empty'   -H 'Sec-Fetch-Mode: cors'   -H 'Sec-Fetch-Site: cross-site'   -H 'Strict-Transport-Security: max-age=63072000; includeSubDomains; preload'   -H 'User-Agent: Mozilla/5.0 (Macintosh; Intel Mac OS X 10_15_7) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/116.0.0.0 Safari/537.36'   -H 'sec-ch-ua: "Chromium";v="116", "Not)A;Brand";v="24", "Google Chrome";v="116"'   -H 'sec-ch-ua-mobile: ?0'   -H 'sec-ch-ua-platform: "macOS"'   --compressed
curl 'https://ap-euw-dev-dpux-serv.azurewebsites.net/dpdisl/point_validation/?tag=ZSUHILZZ_FLOW_C&start_date=2023-09-13%2000%3A00%3A00&end_date=2023-09-22%2023%3A59%3A59'   -H 'Accept: */*'   -H 'Accept-Language: en-GB,en-US;q=0.9,en;q=0.8'   -H 'Authorization: Bearer eyJ0eXAiOiJKV1QiLCJhbGciOiJSUzI1NiIsIng1dCI6Ii1LSTNROW5OUjdiUm9meG1lWm9YcWJIWkdldyIsImtpZCI6Ii1LSTNROW5OUjdiUm9meG1lWm9YcWJIWkdldyJ9.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.lHzGBUA9_MsK0lJWBnQG9ha1WAGrVFksliPPwO0lqKO65ZEdB32rh3j_W35EHnFTsSoI3OHtCqLJGI4griofDt762SV8uZfbFjlPmgrvJM6wthA9WBZ0V8UmhEnZOnrRyM80wCl65x1aJiTgxePTWG3AX-WZrSz3W81NI9t7al-mdyl6MyUBPyYeflohJnm7bbrLzm2P8xauHXvKVlPcCEUY-wJjU6lPWg5gDDiLJqMHWQcvUYLzWS3Jg8z4eanBkOFX2StOEYWRMXvm8UzDY5gdpap5bjfo8oYI0dGdcDy5eEE_8SuxCPHLn8We0p0-2REGGI2mW80qXxXVVnmKPw'   -H 'Connection: keep-alive'   -H 'Content-type: application/json;charset=UTF-8'   -H 'Origin: http://localhost:3000'   -H 'Referer: http://localhost:3000/'   -H 'Sec-Fetch-Dest: empty'   -H 'Sec-Fetch-Mode: cors'   -H 'Sec-Fetch-Site: cross-site'   -H 'Strict-Transport-Security: max-age=63072000; includeSubDomains; preload'   -H 'User-Agent: Mozilla/5.0 (Macintosh; Intel Mac OS X 10_15_7) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/116.0.0.0 Safari/537.36'   -H 'sec-ch-ua: "Chromium";v="116", "Not)A;Brand";v="24", "Google Chrome";v="116"'   -H 'sec-ch-ua-mobile: ?0'   -H 'sec-ch-ua-platform: "macOS"'   --compressed
curl 'https://ap-euw-dev-lops-serv.azurewebsites.net/dpdisl/point_validation/?tag=ZSUHILZZ_FLOW_C&start_date=2023-09-13%2000%3A00%3A00&end_date=2023-09-22%2023%3A59%3A59'   -H 'Accept: */*'   -H 'Accept-Language: en-GB,en-US;q=0.9,en;q=0.8'   -H 'Authorization: Bearer eyJ0eXAiOiJKV1QiLCJhbGciOiJSUzI1NiIsIng1dCI6Ii1LSTNROW5OUjdiUm9meG1lWm9YcWJIWkdldyIsImtpZCI6Ii1LSTNROW5OUjdiUm9meG1lWm9YcWJIWkdldyJ9.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.lHzGBUA9_MsK0lJWBnQG9ha1WAGrVFksliPPwO0lqKO65ZEdB32rh3j_W35EHnFTsSoI3OHtCqLJGI4griofDt762SV8uZfbFjlPmgrvJM6wthA9WBZ0V8UmhEnZOnrRyM80wCl65x1aJiTgxePTWG3AX-WZrSz3W81NI9t7al-mdyl6MyUBPyYeflohJnm7bbrLzm2P8xauHXvKVlPcCEUY-wJjU6lPWg5gDDiLJqMHWQcvUYLzWS3Jg8z4eanBkOFX2StOEYWRMXvm8UzDY5gdpap5bjfo8oYI0dGdcDy5eEE_8SuxCPHLn8We0p0-2REGGI2mW80qXxXVVnmKPw'   -H 'Connection: keep-alive'   -H 'Content-type: application/json;charset=UTF-8'   -H 'Origin: http://localhost:3000'   -H 'Referer: http://localhost:3000/'   -H 'Sec-Fetch-Dest: empty'   -H 'Sec-Fetch-Mode: cors'   -H 'Sec-Fetch-Site: cross-site'   -H 'Strict-Transport-Security: max-age=63072000; includeSubDomains; preload'   -H 'User-Agent: Mozilla/5.0 (Macintosh; Intel Mac OS X 10_15_7) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/116.0.0.0 Safari/537.36'   -H 'sec-ch-ua: "Chromium";v="116", "Not)A;Brand";v="24", "Google Chrome";v="116"'   -H 'sec-ch-ua-mobile: ?0'   -H 'sec-ch-ua-platform: "macOS"'   --compressed
curl 'https://ap-euw-dev-lops.azurewebsites.net/dpdisl/point_validation/?tag=ZSUHILZZ_FLOW_C&start_date=2023-09-13%2000%3A00%3A00&end_date=2023-09-22%2023%3A59%3A59'   -H 'Accept: */*'   -H 'Accept-Language: en-GB,en-US;q=0.9,en;q=0.8'   -H 'Authorization: Bearer eyJ0eXAiOiJKV1QiLCJhbGciOiJSUzI1NiIsIng1dCI6Ii1LSTNROW5OUjdiUm9meG1lWm9YcWJIWkdldyIsImtpZCI6Ii1LSTNROW5OUjdiUm9meG1lWm9YcWJIWkdldyJ9.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.lHzGBUA9_MsK0lJWBnQG9ha1WAGrVFksliPPwO0lqKO65ZEdB32rh3j_W35EHnFTsSoI3OHtCqLJGI4griofDt762SV8uZfbFjlPmgrvJM6wthA9WBZ0V8UmhEnZOnrRyM80wCl65x1aJiTgxePTWG3AX-WZrSz3W81NI9t7al-mdyl6MyUBPyYeflohJnm7bbrLzm2P8xauHXvKVlPcCEUY-wJjU6lPWg5gDDiLJqMHWQcvUYLzWS3Jg8z4eanBkOFX2StOEYWRMXvm8UzDY5gdpap5bjfo8oYI0dGdcDy5eEE_8SuxCPHLn8We0p0-2REGGI2mW80qXxXVVnmKPw'   -H 'Connection: keep-alive'   -H 'Content-type: application/json;charset=UTF-8'   -H 'Origin: http://localhost:3000'   -H 'Referer: http://localhost:3000/'   -H 'Sec-Fetch-Dest: empty'   -H 'Sec-Fetch-Mode: cors'   -H 'Sec-Fetch-Site: cross-site'   -H 'Strict-Transport-Security: max-age=63072000; includeSubDomains; preload'   -H 'User-Agent: Mozilla/5.0 (Macintosh; Intel Mac OS X 10_15_7) AppleWebKit/537.36 (KHTML, like Gecko) Chrome/116.0.0.0 Safari/537.36'   -H 'sec-ch-ua: "Chromium";v="116", "Not)A;Brand";v="24", "Google Chrome";v="116"'   -H 'sec-ch-ua-mobile: ?0'   -H 'sec-ch-ua-platform: "macOS"'   --compressed
exit
git status
git add .
git commit -m "updated draft"
git push origin restructure
gs -sDEVICE=pdfwrite -dCompatibilityLevel=1.4 -dPDFSETTINGS=/prepress -dNOPAUSE -dQUIET -dBATCH -sOutputFile=small.pdf main.pdf
exit
cd Downloads/
l
scp -r Game\ Of\ Thrones\ Audiobooks\ 1-5\ \[Roy\ Dotrice.mp3\] timol@192.168.0.116:/home/timol/Downloads/Shared/ipt_downloads/
scp -r Game\ Of\ Thrones\ Audiobooks\ 1-5\ \[Roy\ Dotrice.mp3\]\ \[* timol@192.168.0.116:/home/timol/Downloads/Shared/ipt_torrents
exit
ssh timol@192.168.1.116
ssh timol@192.168.0.116
exit
ssh timol@192.168.0.116
exit
git status
git add .
git commit -m "updated draft"
git push origin restructure
git status
git add .
git commit -m "updated draft"
git push origin restructure
git status
git add .
git commit -m "updated draft"
git push origin restructure
exit
git status
exit
git clone git@ssh.dev.azure.com:v3/thameswater/Data%20Factory%20-%20Default/Sewer%20Level%20Monitor
mv Sewer%20Level%20Monitor slm
git clone git@github.com:ThamesWater/FastAPI-Sample.git
cd fastapi-sample/fastapi/
python3 -m venv venv
source venv/bin/activate
git status
git checkout -b additions
pip install -r requirements.txt 
git status
l
cd app/
l
gitg status
git status
mkdir config
mkdir core
cd config/
touch __init__.py
touch ../core/__init__.py
exit
cd Downloads/
sudo apt install ./slimbookbattery_4.0.4_all.deb 
slimbookbattery
sudo apt update && sudo apt upgrade
wget https://deb.opera.com/archive.key
sudo apt-key add archive.key
wget https://deb.opera.com/archive.key
sudo apt update && sudo apt upgrade
sudo apt autoremove
exit
sudo apt autoremove
exit
cd work/exploreai/nextjs_sample_app/
l
cat package.json 
next dev
npm run dev
yarn add @microsoft/applicationinsights-web
npm run dev
rm -rf node_modules
yarn install
npm run dev
yarn install
npm run dev
ssh timol@192.168.0.116
ssh timol@192.168.1.148
exit
cd work/exploreai/nextjs_sample_app/
npm run dev
exit
cd Downloads/
md5sum noble-desktop-amd64\(1\).iso 
sha265sum noble-desktop-amd64\(1\).iso 
sha256sum noble-desktop-amd64\(1\).iso 
gnome-terminal
exit