Skip to content

Issues: zwdzwd/transvar

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

34 Open 17 Closed
34 Open 17 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

If any existing database the stores annotations
#61 opened Apr 22, 2024 by yanrongz
transvar does not process hgvs expressions for inversions?
#60 opened Oct 25, 2023 by DavidTamborero
Problem in EnsemblDB for gene_ids with lowercase characters and no gene name
#59 opened Aug 4, 2023 by manulera
1
panno batch example
#56 opened Apr 28, 2022 by XimenaBo
1
discrepancy on genomic annotation
#55 opened Apr 28, 2022 by vswilliamson
http://transvar.info/transvar_user/annotations/ is not correct?
#54 opened Apr 14, 2022 by 971202
2
AttributeError: 'RefGenome' object has no attribute 'faidx_handle'
#53 opened Mar 28, 2022 by LiviaMoura
3
Reference files missing from server
#50 opened Dec 9, 2021 by joe-albert
1
panno mode couldn't find coordinate Ensembl transcript ID
#49 opened Nov 18, 2021 by zhouzhendiao
Deviation from HGVS recommendations
#48 opened Sep 20, 2021 by ktrien
Does/will transvar support Windows?
#47 opened Sep 16, 2021 by geoffreyzhangiai
question concerning implementation HGVS 3´ rule of variants
#46 opened Sep 7, 2021 by ktrien
Missing some characters of amino acid name when use panno
#45 opened Oct 22, 2020 by wei-linlin
problem with transcript to genomic coordinates conversion when UTR spans more than 1 exon
#44 opened Aug 1, 2020 by XiaoJianfeng
Can't index from GTF files for C. elegans
#42 opened Jan 4, 2020 by Snuce
chr8:g.145737904C>T protein change failed
#41 opened Dec 9, 2019 by Gerosyclouds
Performance improvements (suggestion)
#40 opened Nov 6, 2019 by gzalo
1
config.py links for raw transcript tables
#39 opened Nov 5, 2019 by zmiimz
convert variant annotations from TransVar into a basic MAF
#38 opened Oct 1, 2019 by zmiimz
inconsistent InFrameInsertion annotation
#36 opened Aug 10, 2019 by shannonnana
1
missing and inconsistent protein annotation usage
#35 opened Jul 5, 2019 by git-jemiller
1
Inconsistent position
#34 opened May 7, 2019 by bitsyamagu
12
three different results for the same canno input - which one is correct?
#30 opened Feb 27, 2019 by orthoceros
some error message in the info field are not self-explanatory
#29 opened Jan 11, 2019 by DavidTamborero
2
How to get transcript version number?
#28 opened Jan 2, 2019 by lvran1234
1
ProTip! Updated in the last three days: updated:>2025-02-12.