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Test5
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strambc committed Sep 10, 2024
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20 changes: 8 additions & 12 deletions docs/source/mapping.rst
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Expand Up @@ -26,18 +26,8 @@ As an example, this table might be organized in one of the following manner:
**1) Cell boundaries**
- ``##ROI_boundaries_format=`` Cell boundaries are reported in global coordinates following the OME Data Model for Polygon - ROI. As such Cell boundaries are defined as lists of comma separated x,y coordinates separated by spaces like "x1,y1 x2,y2 x3,y3" (e.g. "0,0 1,2 3,5").

* - Number
- Field Name
- Description
- Allowable Values
- Example Values
- Default Value
* - 1
- ``XYZ_unit``
- The unit used to represent XYZ locations or distances.
- SI units of `Length <https://en.wikipedia.org/wiki/SI_base_unit>`_
- nm, micron, mm, etc.
- micron
.. list-table::
:header-rows: 1

* - Column 1 Name
- Column 2 Name
Expand All @@ -47,6 +37,9 @@ As an example, this table might be organized in one of the following manner:
**2) Sub-Cell ROI boundaries**
- ``##ROI_boundaries_format=`` Sub-cell ROI boundaries are reported in global coordinates following the OME Data Model for Polygon - ROI. As such the Cell boundaries are defined as lists of comma separated x,y,z coordinates separated by spaces like "x1,y1,z1 x2,y2,z2 x3,y3,z3" (e.g. "0,0 1,2 3,5").

.. list-table::
:header-rows: 1

* - Column 1 Name
- Column 2 Name
* - ``Sub_Cell_ROI_ID``
Expand All @@ -55,6 +48,9 @@ As an example, this table might be organized in one of the following manner:
**3) Extra_Cell_ROI_ID boundaries**
- ``##ROI_boundaries_format=`` Extra-cell ROI boundaries are reported in global coordinates using the `OBJ format <https://en.wikipedia.org/wiki/Wavefront_.obj_file>`_ for 3D MESH models. As such boundaries are defined as lists of geometric vertices, with (x, y, z, [w]) coordinates, w is optional and defaults to 1.0.

.. list-table::
:header-rows: 1

* - Column 1 Name
- Column 2 Name
* - ``Extra_Cell_ROI_ID``
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