fastqc min instance to be t2.micro

4dn-dcic · Sep 16, 2017 · 99fe33b · 99fe33b
1 parent 703db56
commit 99fe33b
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Showing 2 changed files with 5 additions and 2 deletions.
diff --git a/Benchmark/Benchmark.py b/Benchmark/Benchmark.py
@@ -77,8 +77,11 @@ def fastqc_0_11_4_1(input_json):
 
     input_in_bytes = input_json.get('input_size_in_bytes').get('input_fastq')
     input_size = input_in_bytes / GB_IN_BYTES * 2 + 3
+    mem = 300 * nthreads
+    if mem < 1024:
+        mem = 1024
     r = BenchmarkResult(size=input_size,
-                        mem=300 * nthreads,
+                        mem=mem,
                         cpu=nthreads)
 
     return(r.as_dict())

diff --git a/Benchmark/_version.py b/Benchmark/_version.py
@@ -1,4 +1,4 @@
 """Version information."""
 
 # The following line *must* be the last in the module, exactly as formatted:
-__version__ = "0.1.7"
+__version__ = "0.1.8"