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add age timing column to docs
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@allyhawkins
allyhawkins committed Jul 23, 2024
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3 changes: 2 additions & 1 deletion docs/download_files.md
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Expand Up @@ -103,7 +103,8 @@ Each row corresponds to a unique sample/library combination and contains the fol
| `diagnosis` | Tumor type |
| `subdiagnosis` | Subcategory of diagnosis or mutation status (if applicable) |
| `disease_timing` | At what stage of disease the sample was obtained, either diagnosis or recurrence |
| `age_at_diagnosis` | Age at time sample was obtained |
| `age` | Age provided by submitter |
| `age_timing` | Whether or not age is the age at diagnosis (`diagnosis`), age at collection (`collection`), or `unknown`|
| `sex` | Sex of patient that the sample was obtained from |
| `tissue_location` | Where in the body the tumor sample was located |
| `participant_id` | Unique id corresponding to the donor from which the sample was obtained |
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3 changes: 2 additions & 1 deletion docs/merged_objects.md
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Expand Up @@ -197,7 +197,8 @@ metadata(merged_sce)$sample_metadata # sample metadata only for projects with mu
| `participant_id` | Unique ID corresponding to the donor from which the sample was obtained |
| `submitter_id` | Original sample identifier from submitter |
| `submitter` | Submitter name/ID |
| `age` | Age at time sample was obtained |
| `age` | Age provided by submitter |
| `age_timing` | Whether or not age is the age at diagnosis (`diagnosis`), age at collection (`collection`), or `unknown`|
| `sex` | Sex of patient that the sample was obtained from |
| `diagnosis` | Tumor type |
| `subdiagnosis` | Subcategory of diagnosis or mutation status (if applicable) |
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6 changes: 4 additions & 2 deletions docs/sce_file_contents.md
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Expand Up @@ -175,7 +175,8 @@ The following columns are included in the sample metadata data frame for all lib
| `particpant_id` | Unique ID corresponding to the donor from which the sample was obtained |
| `submitter_id` | Original sample identifier from submitter |
| `submitter` | Submitter name/ID |
| `age` | Age at time sample was obtained |
| `age` | Age provided by submitter |
| `age_timing` | Whether or not age is the age at diagnosis (`diagnosis`), age at collection (`collection`), or `unknown`|
| `sex` | Sex of patient that the sample was obtained from |
| `diagnosis` | Tumor type |
| `subdiagnosis` | Subcategory of diagnosis or mutation status (if applicable) |
Expand Down Expand Up @@ -389,7 +390,8 @@ The `AnnData` object also includes the following additional cell-level metadata
| `participant_id` | Unique ID corresponding to the donor from which the sample was obtained |
| `submitter_id` | Original sample identifier from submitter |
| `submitter` | Submitter name/ID |
| `age` | Age at time sample was obtained |
| `age` | Age provided by submitter |
| `age_timing` | Whether or not age is the age at diagnosis (`diagnosis`), age at collection (`collection`), or `unknown`|
| `sex` | Sex of patient that the sample was obtained from |
| `diagnosis` | Tumor type |
| `subdiagnosis` | Subcategory of diagnosis or mutation status (if applicable) |
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