Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Update FAQ for samples with missing cell type reports #307

Merged
merged 1 commit into from
May 7, 2024

Conversation

allyhawkins
Copy link
Member

Since we are removing any libraries that have < 2 cells, the second bullet point in this FAQ no longer applies. Even if there's between 2-30 cells, the report and annotations will be present for SingleR and then CellAssign will say "Not run". We indicate this in the SCE contents section so I don't think we need those specifics here.

I updated this to just mention when cell type annotations aren't present at all which would be cell lines.

@allyhawkins allyhawkins requested a review from sjspielman May 7, 2024 13:23
Copy link
Member

@sjspielman sjspielman left a comment

Choose a reason for hiding this comment

The reason will be displayed to describe this comment to others. Learn more.

We indicate this in the SCE contents section so I don't think we need those specifics here.

I think if we want to communicate this further, we would want a different FAQ along the lines of "which cells in a library have annotations." We can add this in the future if questions come up about it, so I think your changes to this section are fine.

@allyhawkins allyhawkins merged commit c838e91 into development May 7, 2024
2 checks passed
@allyhawkins allyhawkins deleted the allyhawkins/update-no-celltype-faq branch May 7, 2024 16:38
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

2 participants