Parameter for skipping cell typing if results already exist #402
Workflow file for this run
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Check nextflow stub | |
| on: | |
| pull_request: | |
| branches: | |
| - main | |
| - development | |
| jobs: | |
| nf-stub-check: | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - name: Checkout repo | |
| uses: actions/checkout@v3 | |
| - name: Check Nextflow workflow | |
| uses: docker://nextflow/nextflow:21.10.6 | |
| with: | |
| args: nextflow -log stub-run.log run main.nf -stub -profile stub -ansi-log false | |
| - name: Check Nextflow with checkpoints from previous run | |
| uses: docker://nextflow/nextflow:21.10.6 | |
| with: | |
| args: nextflow -log checkpoint-run.log run main.nf -stub -profile stub -ansi-log false | |
| - name: Join log files | |
| if: ${{ !cancelled() }} | |
| run: cat stub-run.log checkpoint-run.log > nextflow-runs.log | |
| - name: Upload nextflow log | |
| if: ${{ !cancelled() }} | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: nextflow-log | |
| path: nextflow-runs.log | |