Change Anndata extension to h5ad #737
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changed argument to predict_cellassign to make things conistent
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This PR should accomplish the main code changes required for #736.
I basically just searched for
hdf5and updated most of those toh5adas appropriate. The other "major" change was to the arguments for thepredict_cellassign.pyscript, which I changed to be more consistent with other scripts and just useanndata_filerather than referring to the extension itself.I updated the docs in this repo that referred to hdf5 files here too. But of course there are other docs changes that will be required.