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Sync changes from main with dev#754

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Merged

allyhawkins merged 29 commits intodevelopmentAlexsLemonade/scpca-nf:developmentfrom mainAlexsLemonade/scpca-nf:mainCopy head branch name to clipboardApr 24, 2024

+84-51

Commits

Commits on Mar 13, 2024

• Merge pull request #728 from AlexsLemonade/development

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Commits on Mar 15, 2024

• set linewidth only if miQC is plotting model

  allyhawkins

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  bf1891e

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• remove extra &

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  fc18e27

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• increase mem for quant and qc report

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  ea2edcb

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• Merge pull request #730 from AlexsLemonade/allyhawkins/v0.8.0-bug-hunting

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Commits on Apr 1, 2024

• add tags to merge

  jashapiro

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  2be783c

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• Trim SCEs on read

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Commits on Apr 5, 2024

• reduce merge memory a bit

  jashapiro

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  68bc274

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• Add long running tag

  jashapiro

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• Only go to max if actually OOM

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• add long_running to export

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Commits on Apr 7, 2024

• Don't repeat merge

  jashapiro

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  d396c09

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• add merge param

  jashapiro

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  d58bfba

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• branch w/ {}

  jashapiro

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  acf7ede

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• comment properly

  jashapiro

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  b1901f7

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• missing comma

  jashapiro

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  3bcd6e1

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• missing brackets

  jashapiro

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  197f8ab

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• if not repeat

  jashapiro

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  01b8752

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• switch default to not resuse

  jashapiro

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  1e8e5c4

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Commits on Apr 8, 2024

• add debug messages

  jashapiro

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Commits on Apr 12, 2024

• Merge pull request #734 from AlexsLemonade/jashapiro/remove-miqc-first

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Commits on Apr 23, 2024

• revert changes also made on main

  allyhawkins

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• Merge branch 'main' into allyhawkins/merge-conflicts

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• Merge pull request #752 from AlexsLemonade/allyhawkins/merge-conflicts

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Commits on Apr 24, 2024

• add params

  allyhawkins

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  4c03072

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• add cellhash pools to config

  allyhawkins

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  9a3ed15

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• add cellhash pools file to instructions

  allyhawkins

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  deecd9d

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• adjust wording slightly

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• Merge pull request #753 from AlexsLemonade/allyhawkins/example-data-h5ad

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