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Make sure all sample metadata columns are compatible before merging #252

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merged 2 commits into from
Dec 20, 2023
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Make sure all sample metadata columns are compatible before merging #252

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8a45a12
make all columns in sample metadata characters
allyhawkins Dec 20, 2023
0d68ad6
remove assignment
allyhawkins Dec 20, 2023
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5 changes: 5 additions & 0 deletions R/merge_sce_list.R
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Original file line number Diff line number Diff line change
Expand Up @@ -154,6 +154,11 @@ merge_sce_list <- function(
# if object has sample metadata then combine into a single data frame
if ("sample_metadata" %in% names(metadata_list)) {
sample_metadata <- metadata_list$sample_metadata |>
purrr::map(\(df) {
# make sure all column types are compatible first
df <- df |>
dplyr::mutate(across(everything(), as.character))
}) |>
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dplyr::bind_rows() |>
unique()

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