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Prep for v0.4 #279

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merged 5 commits into from
Jul 9, 2024
Merged

Prep for v0.4 #279

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381ef19
Update DESCRIPTION
jashapiro Jul 8, 2024
dfb3058
Minor dependency version bumps
jashapiro Jul 8, 2024
01ed0d7
Build warning fixes
jashapiro Jul 8, 2024
cc17b9c
Update slim requirements files
jashapiro Jul 8, 2024
95f1404
install htslib manually to avoid build error
jashapiro Jul 8, 2024
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4 changes: 3 additions & 1 deletion .Rbuildignore
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Expand Up @@ -16,7 +16,9 @@
# rendered notebooks
^inst/rmd/.*\.html$

# Docker folder
# Docker items
^Dockerfile$
^.dockerignore$
^docker$

# development
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4 changes: 2 additions & 2 deletions DESCRIPTION
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@@ -1,7 +1,7 @@
Package: scpcaTools
Type: Package
Title: Single cell data tools for ScPCA
Version: 0.3.2
Version: 0.4.0
Authors@R: c(
person("Ally", "Hawkins",
email = "[email protected]",
Expand All @@ -25,7 +25,7 @@ Description: Tools for processing single cell data associated with the
License: BSD_3_clause + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.3.1
RoxygenNote: 7.3.2
Depends:
R (>= 4.3.0)
Imports:
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3 changes: 3 additions & 0 deletions Dockerfile
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Expand Up @@ -10,6 +10,9 @@ LABEL org.opencontainers.image.source https://github.com/AlexsLemonade/scpcaTool
ENV RENV_CONFIG_CACHE_ENABLED FALSE
RUN Rscript -e "install.packages(c('renv'))"

# Install Rhtslib manually for renv/Bioc incompatibility (possibly temporary)
RUN Rscript -e "BiocManager::install('Rhtslib')"

COPY docker/renv_slim.lock renv.lock
# restore renv and remove cache files
RUN Rscript -e 'renv::restore()'\
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