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@AllenNeuralDynamics

Allen Institute for Neural Dynamics

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  1. aind-data-schema aind-data-schema Public

    A library that defines AIND data schema and validates JSON.

    Python 25 17

  2. aind-ephys-spikesort-kilosort25-full aind-ephys-spikesort-kilosort25-full Public

    CodeOcean capsule for full electrophysiology analysis pipeline using Kilosort2.5 via SpikeInterface.

    Python 11 3

  3. aind-ephys-pipeline aind-ephys-pipeline Public

    AIND pipeline for processing extracellular electrophysiology data

    Nextflow 10 4

  4. segmentation-skeleton-metrics segmentation-skeleton-metrics Public

    A Python package for evaluating the topological accuracy of a neuron segmentation by computing skeleton-based metrics.

    Python 7

  5. exa-spim-hardware exa-spim-hardware Public

    6

  6. ibl-ephys-alignment-gui ibl-ephys-alignment-gui Public

    Forked from int-brain-lab/iblapps

    Tool for aligning electrophysiological features to anatomical landmarks

    Python 6 3

Repositories

Showing 10 of 388 repositories
  • aind-metadata-mapper Public

    Repository to help gather and map metadata from different sources

    AllenNeuralDynamics/aind-metadata-mapper’s past year of commit activity
    Python 0 MIT 2 27 2 Updated Apr 28, 2025
  • aind-docker-images Public
    AllenNeuralDynamics/aind-docker-images’s past year of commit activity
    Dockerfile 0 MIT 0 3 1 Updated Apr 28, 2025
  • aind-slurm-rest-v2 Public

    Python wrapper for SLURM REST API

    AllenNeuralDynamics/aind-slurm-rest-v2’s past year of commit activity
    0 MIT 0 0 0 Updated Apr 28, 2025
  • LCNE-patchseq-analysis Public

    Library for analyzing patch-seq data from LC-NE

    AllenNeuralDynamics/LCNE-patchseq-analysis’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Apr 29, 2025
  • dynamicrouting-encoding-standalone Public Forked from AllenNeuralDynamics/dynamicrouting-encoding-io
    AllenNeuralDynamics/dynamicrouting-encoding-standalone’s past year of commit activity
    Python 0 MIT 3 0 0 Updated Apr 29, 2025
  • dynamic-foraging-task Public

    Bonsai/Harp workflow for Dynamic Foraging with Python GUI for visualization and control

    AllenNeuralDynamics/dynamic-foraging-task’s past year of commit activity
    Python 5 MIT 4 44 (1 issue needs help) 6 Updated Apr 28, 2025
  • Aind.Behavior.DynamicForaging Public

    A repository for the Dynamic Foraging task.

    AllenNeuralDynamics/Aind.Behavior.DynamicForaging’s past year of commit activity
    Python 0 0 0 0 Updated Apr 28, 2025
  • parallax Public

    GUI control software for the Modular Insertion System (MIS)

    AllenNeuralDynamics/parallax’s past year of commit activity
    Python 5 MIT 1 9 2 Updated Apr 28, 2025
  • aind-ephys-processing-qc Public

    CodeOcean Capsule for ephys quality control

    AllenNeuralDynamics/aind-ephys-processing-qc’s past year of commit activity
    Python 0 MIT 0 1 1 Updated Apr 28, 2025
  • aind-z1-radial-correction Public

    Perform Radial Correction on 3D Image Tiles to account for small lens abberations.

    AllenNeuralDynamics/aind-z1-radial-correction’s past year of commit activity
    Python 0 MIT 0 1 1 Updated Apr 28, 2025
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