- Fork and clone the repository
- Complete the python program, based on the template, to calculate various properties
- Push to your repository
- BAM file: ftp://ftp.1000genomes.ebi.ac.uk/vol1/ftp/phase3/data/HG00096/alignment/HG00096.chrom11.ILLUMINA.bwa.GBR.low_coverage.20120522.bam
- The following tools might be of help:
- Biopython (http://biopython.org/)
- pybedtools (https://daler.github.io/pybedtools/)
- NCBI (http://biopython.org/DIST/docs/api/Bio.Entrez-module.html)
- pybam (https://github.com/JohnLonginotto/pybam)
- pysam (http://pysam.readthedocs.io/en/latest/usage.html)
- UCSC
| Student | Gene |
|---|---|
| Basílio José | AMPD3 |
| Beganovic Alma | BDNF |
| Bindeus Alexander | CPT1A |
| Brauneis Shelley | HBB |
| Buchner Bianca Allegra | CCL9 |
| Gollobich Martin | HMBS |
| Gutsohn Tamás | API5 |
| Juno Claudia | WT1 |
| Lang Priska | USH1C |
| Lehrach Michael | SMPD1 |
| Majewski Anna | B3GNT1 |
| Moser Josef | ATM |
| Ruge Frank | INS |
| Spielvogel Clemens | DHCR7 |
| Tolios Alexander | TH |
| Tomaselli Anna | SBF2 |