Respiratory Disease: Tapyr Version

This repository contains the tapyr migration of the pure PyShiny Respiratory Disease dashboard, which originates from the R/Shiny version Respiratory Disease app.

Explore the app

The app is deployed at Appsilon Posit Connect.

How to run

(This section is copied from the tapyr template)

Using Devcontainer

To ensure a consistent development experience across all environments, we recommend using the devcontainer configuration with Visual Studio Code or DevPod for container-based development.

1. Start the Devcontainer: Open the project in VS Code and select "Reopen in Container" when prompted, or use the Command Palette (Ctrl+Shift+P) and choose "Remote-Containers: Reopen in Container". Alternatively, use DevPod following their instructions.
2. Activate the virtual environment:

   poetry shell

3. Run the application:

   shiny run app.py --reload

4. Execute tests:

   poetry run pytest

Note: The Devcontainer might limit some playwright features, such as codegen. For full functionality, consider a local setup.

Setting Up Locally with Poetry

For developers preferring a local setup without Devcontainer:

1. Install pipx: Ensure pipx is installed for managing isolated CLI apps.
2. Install Poetry:

   pipx install poetry

3. Clone the repository and navigate to it.
4. Install dependencies:

   poetry install
   playwright install

Attention: Follow any additional steps prompted by playwright install.

Deployment on Posit Connect

Deploy your application to Posit Connect by:

1. Exporting your API Key:

   export CONNECT_API_KEY="your_api_key_here"

2. Configuring Posit Connect:

   rsconnect add \
   --api-key $CONNECT_API_KEY \
   --server <MY_CONNECT_URL> \
   --name <SERVER_NAME>

3. Deploying:

   rsconnect deploy shiny -t "Tapyr App" .

Replace placeholders with your server URL, server name, and API key. Verify the deployment on Posit Connect for successful upload.

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Developed with ❤️ at Appsilon. Get in touch: [email protected].

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