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improve core functionalities for CLI #53

Merged
merged 35 commits into from
May 7, 2024
Merged

improve core functionalities for CLI #53

merged 35 commits into from
May 7, 2024

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abearab
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@abearab abearab commented May 7, 2024

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counts[sample_id] = cnt['mapped']
recombinants[sample_id] = cnt['recombinant']

if parallel:
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@nick-youngblut I couldn't resolve this part. Basically, I hope to submit multithread on samples to enhance the run time for fastq2count task.

@abearab abearab merged commit 6ff613a into master May 7, 2024
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@abearab abearab self-assigned this May 7, 2024
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Write CLI and draw step-by-step workflows Design relevant python objects
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