Cleans up the reading of DICOM metadata and returns dictionary not DICOM object #252

Workflow file for this run

	name: CI/CD

	on:
	push:
	branches: [ main, develop ]
	pull_request:
	branches: [ main, develop ]
	release:
	types: [published]

	defaults:
	run:
	shell: bash

	jobs:
	test:
	strategy:
	matrix:
	os: [macos-latest, ubuntu-latest, windows-latest]
	python-version: ["3.8", "3.9", "3.12"]
	fail-fast: false
	runs-on: ${{ matrix.os }}
	defaults:
	run:
	shell: bash -l {0}
	env:
	PIP_BREAK_SYSTEM_PACKAGES: 1
	steps:
	- name: Checkout
	uses: actions/checkout@v2
	- name: Unset header
	# checkout@v2 adds a header that makes branch protection report errors
	# because the Github action bot is not a collaborator on the repo
	run: git config --local --unset http.https://github.com/.extraheader
	- name: Fetch tags
	run: git fetch --prune --unshallow
	- name: Disable etelemetry
	run: echo "NO_ET=TRUE" >> $GITHUB_ENV
	- name: Set up Python ${{ matrix.python-version }} on ${{ matrix.os }}
	uses: actions/setup-python@v2
	with:
	python-version: ${{ matrix.python-version }}
	- name: Update build tools
	run: python3 -m pip install --upgrade pip
	- name: Install Package
	run: python3 -m pip install -e .[test]
	- name: Install Extras Package
	run: python3 -m pip install -e ./extras[test]
	- name: MyPy
	run: mypy --install-types --non-interactive --no-warn-unused-ignores .
	- name: Pytest
	run: pytest -vvs --cov fileformats --cov-config .coveragerc --cov-report xml .
	- name: Upload coverage to Codecov
	uses: codecov/codecov-action@v2
	with:
	fail_ci_if_error: true
	token: ${{ secrets.CODECOV_TOKEN }}

	build:
	needs: [test]
	runs-on: ubuntu-latest
	strategy:
	matrix:
	pkg:
	- ["main", "."]
	- ["extras", "./extras"]
	steps:
	- uses: actions/checkout@v3
	with:
	submodules: recursive
	fetch-depth: 0
	- name: Unset header
	# checkout@v2 adds a header that makes branch protection report errors
	# because the Github action bot is not a collaborator on the repo
	run: git config --local --unset http.https://github.com/.extraheader
	- name: Set up Python
	uses: actions/setup-python@v3
	with:
	python-version: '3.12'
	- name: Install build tools
	run: python3 -m pip install --break-system-packages build twine
	- name: Build source and wheel distributions
	run: python3 -m build ${{ matrix.pkg[1] }}
	- name: Check distributions
	run: twine check ${{ matrix.pkg[1] }}/dist/*
	- uses: actions/upload-artifact@v3
	with:
	name: built-${{ matrix.pkg[0] }}
	path: ${{ matrix.pkg[1] }}/dist

	build-docs:
	runs-on: ubuntu-latest
	needs: [build]
	steps:
	- name: Checkout repository
	uses: actions/checkout@v2
	- name: Unset header
	# checkout@v2 adds a header that makes branch protection report errors
	# because the Github action bot is not a collaborator on the repo
	run: git config --local --unset http.https://github.com/.extraheader
	- name: Setup Python
	uses: actions/setup-python@v2
	with:
	python-version: 3.x
	- name: Install dependencies
	run: \|
	python3 -m pip install --break-system-packages --upgrade pip
	pip install .[docs]
	- name: Build documentation
	run: \|
	cd docs
	make html
	cd ..
	- uses: actions/upload-artifact@v3
	with:
	name: built-docs
	path: docs/build/html

	deploy:
	needs: [build, build-docs]
	runs-on: ubuntu-latest
	steps:
	- name: Download build
	uses: actions/download-artifact@v3
	with:
	name: built-main
	path: dist
	- name: Check for PyPI token on tag
	id: deployable
	if: github.event_name == 'release'
	env:
	PYPI_API_TOKEN: "${{ secrets.PYPI_API_TOKEN }}"
	run: if [ -n "$PYPI_API_TOKEN" ]; then echo "DEPLOY=true" >> $GITHUB_OUTPUT; fi
	- name: Upload to PyPI
	if: steps.deployable.outputs.DEPLOY
	uses: pypa/gh-action-pypi-publish@release/v1
	with:
	user: __token__
	password: ${{ secrets.PYPI_API_TOKEN }}

	deploy-extras:
	needs: [build, deploy]
	runs-on: ubuntu-latest
	steps:
	- name: Download build
	uses: actions/download-artifact@v3
	with:
	name: built-extras
	path: dist
	- name: Check for PyPI token on tag
	id: deployable
	if: github.event_name == 'release'
	env:
	EXTRAS_PYPI_API_TOKEN: "${{ secrets.EXTRAS_PYPI_API_TOKEN }}"
	run: if [ -n "$EXTRAS_PYPI_API_TOKEN" ]; then echo "DEPLOY=true" >> $GITHUB_OUTPUT; fi
	- name: Upload to PyPI
	if: steps.deployable.outputs.DEPLOY
	uses: pypa/gh-action-pypi-publish@release/v1
	with:
	user: __token__
	password: ${{ secrets.EXTRAS_PYPI_API_TOKEN }}

	deploy-docs:
	needs: [build-docs, deploy]
	runs-on: ubuntu-latest
	steps:
	- name: Download built docs
	uses: actions/download-artifact@v3
	with:
	name: built-docs
	path: docs-build
	- name: Check for GHPAGES_DEPLOY_KEY token
	id: deployable
	if: github.event_name == 'release'
	env:
	GHPAGES_DEPLOY_KEY: "${{ secrets.GHPAGES_DEPLOY_KEY }}"
	run: if [ -n "$GHPAGES_DEPLOY_KEY" ]; then echo "DEPLOY=true" >> $GITHUB_OUTPUT; fi
	- name: Deploy Docs to GitHub Pages
	if: steps.deployable.outputs.DEPLOY
	uses: peaceiris/actions-gh-pages@v3
	with:
	github_token: ${{ secrets.GHPAGES_DEPLOY_KEY }}
	publish_dir: docs-build

	# Deploy on tags if PYPI_API_TOKEN is defined in the repository secrets.
	# Secrets are not accessible in the if: condition [0], so set an output variable [1]
	# [0] https://github.community/t/16928
	# [1] https://docs.github.com/en/actions/reference/workflow-commands-for-github-actions#setting-an-output-parameter

Provide feedback

Saved searches

Use saved searches to filter your results more quickly

Cleans up the reading of DICOM metadata and returns dictionary not DICOM object #252

Workflow file

Cleans up the reading of DICOM metadata and returns dictionary not DICOM object #252

Jobs

Run details

Workflow file for this run