refactor: add missing type hints

kazu/tests/test_ontology_parser.py

@@ -132,7 +132,7 @@ def setup_databases(
     return SynonymDatabase()
 
 
-def test_should_add_resource_to_parser(tmp_path) -> None:
+def test_should_add_resource_to_parser(tmp_path: Path) -> None:
     resource = OntologyStringResource(
         original_synonyms=frozenset(
             [
@@ -165,7 +165,7 @@ def test_should_add_resource_to_parser(tmp_path) -> None:
     assert len(syn_db.get_all(PARSER_1_NAME)) == len(syn_db.get_all(NOOP_PARSER_NAME)) + 1
 
 
-def test_should_drop_from_parser_via_general_rule(tmp_path) -> None:
+def test_should_drop_from_parser_via_general_rule(tmp_path: Path) -> None:
     global_actions = GlobalParserActions(
         actions=[
             ParserAction(
@@ -187,7 +187,7 @@ def test_should_drop_from_parser_via_general_rule(tmp_path) -> None:
     assert len(syn_db.get_all(PARSER_1_NAME)) + 2 == len(syn_db.get_all(NOOP_PARSER_NAME))
 
 
-def test_should_modify_resource_from_parser_via_general_rule(tmp_path) -> None:
+def test_should_modify_resource_from_parser_via_general_rule(tmp_path: Path) -> None:
     # note, this test is similar to test_should_drop_from_parser_via_general_rule,
     # although it tests that a OntologyStringResource is also affected by a general rule
     global_actions = GlobalParserActions(
@@ -249,7 +249,7 @@ def test_should_modify_resource_from_parser_via_general_rule(tmp_path) -> None:
     assert len(syn_db.get_syns_for_id(PARSER_1_NAME, "first")) == 0
 
 
-def test_should_not_add_a_resource_as_id_nonexistant(tmp_path) -> None:
+def test_should_not_add_a_resource_as_id_nonexistant(tmp_path: Path) -> None:
     override_id = "I do not exist"
     resource = OntologyStringResource(
         original_synonyms=frozenset(
@@ -291,7 +291,7 @@ def test_should_not_add_a_resource_as_id_nonexistant(tmp_path) -> None:
     assert override_id not in modified_equivalent_ids
 
 
-def test_should_override_id_set(tmp_path) -> None:
+def test_should_override_id_set(tmp_path: Path) -> None:
     resource = OntologyStringResource(
         original_synonyms=frozenset(
             [
@@ -332,7 +332,7 @@ def test_should_override_id_set(tmp_path) -> None:
     assert "second" in equiv_id_set.ids
 
 
-def test_should_not_add_a_resource_to_db_as_one_already_exists(tmp_path) -> None:
+def test_should_not_add_a_resource_to_db_as_one_already_exists(tmp_path: Path) -> None:
     resource = OntologyStringResource(
         original_synonyms=frozenset(
             [
@@ -369,7 +369,7 @@ def test_should_not_add_a_resource_to_db_as_one_already_exists(tmp_path) -> None
     assert len(syn_db.get_all(PARSER_1_NAME)) == len(syn_db.get_all(NOOP_PARSER_NAME))
 
 
-def test_should_not_add_a_resource_as_can_infer_associated_id_sets(tmp_path) -> None:
+def test_should_not_add_a_resource_as_can_infer_associated_id_sets(tmp_path: Path) -> None:
     resource = OntologyStringResource(
         original_synonyms=frozenset(
             [
@@ -392,7 +392,7 @@ def test_should_not_add_a_resource_as_can_infer_associated_id_sets(tmp_path) ->
     assert len(syn_db.get_all(PARSER_1_NAME)) == len(syn_db.get_all(NOOP_PARSER_NAME))
 
 
-def test_conflicting_overrides_in_associated_id_sets(tmp_path) -> None:
+def test_conflicting_overrides_in_associated_id_sets(tmp_path: Path) -> None:
     resource1 = OntologyStringResource(
         original_synonyms=frozenset(
             [
@@ -453,7 +453,7 @@ def test_conflicting_overrides_in_associated_id_sets(tmp_path) -> None:
         )
 
 
-def test_gene_ontology_caching(tmp_path) -> None:
+def test_gene_ontology_caching(tmp_path: Path) -> None:
     micro_graph = """
 @prefix : <https://www.example.org> .
 @prefix owl: <http://www.w3.org/2002/07/owl#> .