Update content, scss, logo

_config.yml

@@ -13,7 +13,7 @@ theme_variables:
   # biocommons blue
   theme_color: 205a86
   topnav:
-    brand_logo: assets/img/main_logo.png
+    brand_logo: assets/img/Australian-Biocommons-Logo-Horizontal-Reversed-RGB.png
 
 exclude:
   - README.md

_includes/table.html

@@ -63,10 +63,6 @@
     </div>
 </div>
 
-<div class="my-5">
-    <p class="fw-bold">Please note:</p>
-    <p><span class="badge bg-light text-bg-light font-monospace">NCI (if89)</span> below refers to the <a class="badge text-primary fw-semibold bg-light font-monospace" href="https://australianbiocommons.github.io/ables/if89/">Australian BioCommons Tools and Workflows repository</a>, located in project allocation if89 at the National Computational Infrastructure (NCI).</p>
-</div>
 
 {%- if include.tag %}
 {%- assign tools = site.data.data | add_related_pages | where:"related_pages", include.tag |

_sass/_bootstrap_variables.scss

@@ -14,12 +14,14 @@ $bioc-green: #2cb77c;
 $primary:       $bioc-blue;
 $secondary:     $bioc-teal;
 $light:         #f8f9fa;
+$white:         #FFFFFF;
 $blue:          $bioc-blue;
 $dark:          #212529;
 
 /*-----Custom values for Bootstrap variables-----*/
 $link-decoration: none;
-$navbar-light-hover-color: $primary;
-$link-color: $blue;
+$navbar-light-hover-color: $white;
+$component-active-bg: $primary;
+$link-color: $bioc-blue;
 
 // Find out which bootstrap variables you can use to fine tune the styling of your website here: https://github.com/ELIXIR-Belgium/elixir-toolkit-theme/blob/main/_sass/bootstrap/_variables.scss

_sass/_custom_classes.scss

@@ -3,6 +3,10 @@
 //Example for highlighting the active page in the navigation:
 /*-----Top navigation-----*/
 
+.nav-link {
+    color: $white;
+}
+
 .navbar-nav .nav-item > a {
     &.active {
         color: $white;
@@ -14,9 +18,10 @@
 /* see https://github.com/ELIXIR-Belgium/elixir-toolkit-theme*/
 
 header .navbar {
+    background-color: $primary;
     .navbar-brand {
         font-size: 2.25rem;
-        color: $dark !important;
+        color: $white !important;
             img {
                 max-height: 80px;
             }

index.md

@@ -8,6 +8,9 @@ datatable: true
 This page lists bioinformatics tools and software that are installed across several of the [**BioCommons infrastructure partner systems**](https://support.biocommons.org.au/support/solutions/articles/6000251977-compute-systems-at-the-biocommons-partner-infrastructures). Tool / software status on other infrastructure partner systems will be added over time.
 
 
+{% include callout.html type="important" content="`NCI (if89)` in the table refers to the [Australian BioCommons Tools and Workflows repository](https://australianbiocommons.github.io/ables/if89/), located in project allocation `if89` at the National Computational Infrastructure (NCI)." %}
+
+
 <div markdown="0"> 
 {% include table.html %}
 </div>

pages/toolfinder.md

@@ -2,6 +2,7 @@
 title: About
 description: Add a plain text description here.
 sidebar: false
+toc: true
 ---