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ghutchis committed Oct 19, 2024
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```{toctree}
:glob: true
:maxdepth: 1
:maxdepth: 2

core
io
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```{toctree}
:glob: true
:maxdepth: 1

class/class_avogadro_1_1_core*
class/class_avogadro_1_1_type_traits*
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```{toctree}
:glob: true
:maxdepth: 1

class/class_avogadro_1_1_io*
class/class_avogadro_1_1_quantum_i_o*
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```{toctree}
:glob: true
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class/class_avogadro_1_1_mole*
```
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```{toctree}
:glob: true
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```{toctree}
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class/class_avogadro_1_1_render*
```
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[Open Chemistry](https://www.openchemistry.org/) is an umbrella for the development of several open-source chemical tools.
Avogadro is its primary subproject, but it also oversees the [Chemical JSON](https://github.com/OpenChemistry/chemicaljson) file format as well as [a bunch of other cool stuff](https://github.com/orgs/OpenChemistry/repositories).

The Avogadro desktop application is made up primarily of the `avogadrolibs` module, which does all the behind-the-scenes work, and the `avogadroapp` module, which provides a GUI on top.
In practice,
The Avogadro desktop application is made up primarily of the `avogadrolibs` module, which does all the behind-the-scenes work, and the `avogadroapp` which provides a GUI on top. This split allows functions from `avogadrolibs` to be available in Python modules, for example to read chemistry files, generate molecular orbital surfaces.

relies on various other Open Chemistry modules to function.
In practice, most functionality and features are provided by `[avogadrolibs](https://github.com/OpenChemistry/avogadrolibs)` and particularly by various plugin classes.

The main project uses various other Open Chemistry modules to function.
[avogadro-i18n](https://github.com/OpenChemistry/)
: Language translations and localization handled through [Weblate](https://hosted.weblate.org/engage/avogadro/)

[avogenerators](https://github.com/OpenChemistry/)
: Scripts providing input generator dialogs for various computational packages such as Gaussian, Orca, etc.

[crystals](https://github.com/OpenChemistry/)
: Example crystal structures provided through File ⇒ Import ⇒ Crystal

[fragments](https://github.com/OpenChemistry/fragments)
: Common inorganic ligands and functional groups provided through the Template Tool

[molecules](https://github.com/OpenChemistry/)
: Common molecules provided through Build ⇒ Insert ⇒ Molecule
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(develop-vtk)=

# VTK Classes
# Avogadro::VTK

Avogadro uses VTK for several things, most notably plotting/graphing
spectra, orbital diagrams, band diagrams, density of states, etc.

```{toctree}
:glob: true
:maxdepth: 1

class/class_avogadro_1_1_v_t_k*
class/classvtk_avogadro*
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<li class="toctree-l2"><a class="reference internal" href="../molequeue.html">Avogadro::MoleQueue</a></li>
<li class="toctree-l2"><a class="reference internal" href="../qtgui.html">Avogadro::QtGui</a></li>
<li class="toctree-l2"><a class="reference internal" href="../rendering.html">Avogadro::Rendering</a></li>
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<li class="toctree-l2"><a class="reference internal" href="../qtgui.html">Avogadro::QtGui</a></li>
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<li class="toctree-l2"><a class="reference internal" href="../qtgui.html">Avogadro::QtGui</a></li>
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<li class="toctree-l2"><a class="reference internal" href="../molequeue.html">Avogadro::MoleQueue</a></li>
<li class="toctree-l2"><a class="reference internal" href="../qtgui.html">Avogadro::QtGui</a></li>
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<li class="toctree-l2"><a class="reference internal" href="../qtgui.html">Avogadro::QtGui</a></li>
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<li class="toctree-l2"><a class="reference internal" href="../qtgui.html">Avogadro::QtGui</a></li>
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<li class="toctree-l2"><a class="reference internal" href="../qtgui.html">Avogadro::QtGui</a></li>
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<li class="toctree-l2"><a class="reference internal" href="../qtgui.html">Avogadro::QtGui</a></li>
<li class="toctree-l2"><a class="reference internal" href="../rendering.html">Avogadro::Rendering</a></li>
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<li class="toctree-l2"><a class="reference internal" href="../qtgui.html">Avogadro::QtGui</a></li>
<li class="toctree-l2"><a class="reference internal" href="../rendering.html">Avogadro::Rendering</a></li>
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<li class="toctree-l2"><a class="reference internal" href="../qtgui.html">Avogadro::QtGui</a></li>
<li class="toctree-l2"><a class="reference internal" href="../rendering.html">Avogadro::Rendering</a></li>
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<li class="toctree-l2"><a class="reference internal" href="../molequeue.html">Avogadro::MoleQueue</a></li>
<li class="toctree-l2"><a class="reference internal" href="../qtgui.html">Avogadro::QtGui</a></li>
<li class="toctree-l2"><a class="reference internal" href="../rendering.html">Avogadro::Rendering</a></li>
<li class="toctree-l2"><a class="reference internal" href="../vtk.html">VTK Classes</a></li>
<li class="toctree-l2"><a class="reference internal" href="../vtk.html">Avogadro::VTK</a></li>
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<li class="toctree-l2"><a class="reference internal" href="../molequeue.html">Avogadro::MoleQueue</a></li>
<li class="toctree-l2"><a class="reference internal" href="../qtgui.html">Avogadro::QtGui</a></li>
<li class="toctree-l2"><a class="reference internal" href="../rendering.html">Avogadro::Rendering</a></li>
<li class="toctree-l2"><a class="reference internal" href="../vtk.html">VTK Classes</a></li>
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<li class="toctree-l2"><a class="reference internal" href="../molequeue.html">Avogadro::MoleQueue</a></li>
<li class="toctree-l2"><a class="reference internal" href="../qtgui.html">Avogadro::QtGui</a></li>
<li class="toctree-l2"><a class="reference internal" href="../rendering.html">Avogadro::Rendering</a></li>
<li class="toctree-l2"><a class="reference internal" href="../vtk.html">VTK Classes</a></li>
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<li class="toctree-l2"><a class="reference internal" href="../qtgui.html">Avogadro::QtGui</a></li>
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<li class="toctree-l2"><a class="reference internal" href="../qtgui.html">Avogadro::QtGui</a></li>
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